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• Rudolf Amann
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Pub­lic­a­tions Rudolf Amann

Publication ID (ResearcherID: C-6534-2014)

Cita­tion Met­rics Web of Sci­ence (30th Janu­ary 2025)

• Total Articles in Publication List: 449
• Sum of Times Cited: 74619
• h-index: 131

Google Scholar (h-in­dex: 163)

 

 

> 2018 - 2013

> 2012 - 2007

> 2006 - 2001

> 2000 - 1988

2024

Miksch, S., L.H. Orellana, M. Oggerin de Orube, S. Vidal-Melgosa, V. Solanki, J.-H. Hehemann, R. Amann, K. Knittel. 2024. Taxo­nomic and func­tional sta­bil­ity over­rules sea­son­al­ity in po­lar benthic mi­cro­bi­o­mes. ISME J. 18:1-14. [doi:10.1093/ismejo/wrad005] [download pdf]

Viver, T., R.E. Conrad, L.M. Rodriguez-R, A.S. Ramírez, S.N. Venter, J. Rocha-Cárdenas, M. Llabrés, R. Amann, K.T. Konstantinidis, R. Rossello-Mora. 2024. To­wards es­tim­at­ing the num­ber of strains that make up a nat­ural bac­terial pop­u­la­tion. Nat. Com­mun. 15:544. [doi:10.1038/s41467-023-44622-z] [download pdf]

Brown, S., C.C. Lloyd, G. Giljan, S. Ghobrial, R. Amann, C. Arnosti. 2024. Pulsed in­puts of high mo­lecu­lar weight or­ganic mat­ter shift the mech­an­isms of sub­strate util­isa­tion in mar­ine bac­terial com­munit­ies. En­viron. Mi­cro­biol. 26:e16580. [doi:10.1111/1462-2920.16580] [internal download]

Moncada, C., A. Ellrott, D. de Beer, R. Amann and K. Knittel. 2024. The Ell­rott grab: A small, light­weight sed­i­ment sampler for col­lect­ing un­dis­turbed sandy sed­i­ments. Lim­nol. Ocean­ogr. Meth. 22:159-69. [doi:10.1002/lom3.10598] [download pdf]

Wang, F.-Q., D. Bartosik, C. Sidhu, R. Siebers, D.C. Lu, A. Trautwein-Schult, D. Becher, B. Huettel, J. Rick, I.V. Kirstein, K.H. Wiltshire, T. Schweder, B.M. Fuchs, M.M. Bengtsson, H. Teeling, R.I. Amann. 2024. Particle at­tached bac­teria act as gate­keep­ers in the de­com­pos­i­tion of com­plex phyto­plank­ton poly­sac­char­ides. Mi­cro­bi­ome. 12:32. [doi:10.1186/s40168-024-01757-5] [download pdf]

Kalenborn, S., D. Zühlke, K. Riedel, R.I. Amann, J. Harder. 2024. Pro­teo­mic in­sight into ar­a­binogalactan util­iz­a­tion by particle-as­so­ci­ated Maribacter sp. MAR_2009_72. FEMS Mi­cro. Ecol. 100:fi­ae045. [doi:10.1093/femsec/fiae045] [download pdf]

Mon­cada, C., C. Arnosti, J.D. Brüwer, D. de Beer, R. Amann, K. Knit­tel. 2024. Niche sep­ar­a­tion in bac­ter­ial com­mu­nit­ies and activ­it­ies in pore­wa­ter, loosely at­tached, and firmly at­tached frac­tions in per­me­able sur­face sed­i­ments. ISME 18:wrae159. [doi:10.1093/ismejo/wrae159] [download pdf]

Dede, B., E.P. Reeves, M. Wal­ter, W. Bach, R. Amann, A. Meyerdierks. 2024. Bac­terial chemo­lithoauto­trophy in ul­tramafic plumes along the Mid-At­lantic Ridge. ISME 18:wrae165. [doi:10.1093/ismejo/wrae165] [download pdf]

Bus­tos-Ca­par­ros, E., T. Viver, J.F. Gago, L.M. Rodrig­uez-R, J.K. Hatt, S.N. Venter, B.M. Fuchs, R. Amann, R. Bosch, K.T. Kon­stantin­idis, R. Ros­sello-Mora. 2024. Eco­lo­gical suc­cess of ex­treme halo­philes sub­jec­ted to re­cur­rent os­motic dis­turb­ances is primar­ily driven by con­gen­eric spe­cies re­place­ment. ISME 18:wrae215. [doi:10.1093/ismejo/wrae215] [download pdf]

Beidler, I., N. Steinke, T. Schulze, C. Sidhu, D. Bar­tosik, M.-K. Zühlke, L. Torres Mar­tin, J. Krull, T. Dutschei, B. Fer­rero-Bor­dera, J. Ri­elicke, V. Kale, T. Sura, A. Traut­wein-Schult, I.V. Kirstein, K.H. Wilt­shire, H. Teel­ing, D. Becher, M.M. Bengts­son, J.-H. Hehem­ann, U.T. Bornsch­euer, R.I. Amann, T. Schweder. 2024. Al­pha-glu­cans from bac­terial nec­ro­mass in­dic­ate an in­tra-pop­u­la­tion loop within the mar­ine car­bon cycle. Nat. Com­mun. 15:4048. [doi:10.1038/s41467-024-48301-5] [download pdf]

Knittel, K., S. Miksch, C. Moncada, S. Silva-Solar, J. Moye, R. Amann, C. Arnosti. 2024. Distinct actors drive different mechanisms of biopolymer processing in polar marine coastal sediments. En­vi­ron. Mi­cro­bi­ol. 26:e16687. [doi:10.1111/1462-2920.16687] [download pdf]

Kalenborn, S., D. Zühlke, G. Reintjes, K. Riedel, R.I. Amann and J. Harder. 2024. Genes for laminarin degradation are dispersed in the genomes of particle-associated Maribacter species. Fron­tiers Mi­cro­bi­ol. 15:1393588. [doi:10.3389/fmicb.2024.1393588] [download pdf]

Silva-Solar, S., T. Viver, Y. Wang, L.H. Orellana, K. Knittel, R. Amann. 2024.  Acidimicrobiia, the actinomycetota of coastal marine sediments: Abundance, taxonomy and genomic potential. Syst. Appl. Mi­cro­bi­ol. 47:126555. [doi:10.1016/j.syapm.2024.126555] [download pdf]

Conrad, R.E., C.E. Brink, T. Viver, L.M. Rodriguez-R, B. Aldeguer-Riquelme, J.K. Hatt, S.N. Venter, R. Rossello-Mora, R. Amann, K.T. Konstantinidis. 2024. Microbial species and intraspecies units exist and are maintained by ecological cohesiveness coupled to high homologous recombination. Nat. Com­mun. 15:9906. [doi:10.1038/s41467-024-53787-0] [download pdf]

 

2023

Giljan, G., S. Brown, C.C. Lloyd, S. Ghobrial, R. Amann, and C. Arnosti. 2023. Selfish bac­teria are act­ive throughout the wa­ter column of the ocean. ISME com­mun. 3:e11. [doi:10.1038/s43705-023-00219-7] [download pdf]

Dede, B., T. Priest, W. Bach, M. Walter, R. Amann, and A. Meyerdierks. 2023. High abund­ance of hy­dro­car­bon-de­grad­ing Alcanivorax in plumes of hy­dro­therm­ally act­ive vol­ca­noes in the South Pa­cific Ocean. ISME. 17:600-10. [doi:10.1038/s41396-023-01366-4] [download pdf]

Rossello-Mora R., K.T. Konstantinidis, and R. Amann. 2023. Ed­it­or­ial: How Sys­tem­atic and Ap­plied Mi­cro­bi­o­logy will deal with two no­men­clature codes (ICNP and Se­q­Code) for proka­ryotes, and which clas­si­fic­a­tion stand­ards are re­com­men­ded for new taxa de­scrip­tions. Syst. Appl. Mi­cro­biol. 46:126371. [doi:10.1016/j.syapm.2022.126371] [download pdf]

Reintjes, G., A. Heins, C. Wang, and R. Amann. 2023. Abund­ance and com­pos­i­tion of particles and their at­tached mi­cro­bi­o­mes along an At­lantic Me­ri­di­onal Tran­sect. Front. Mar. Sci. 10:1051510. [doi:10.3389/fmars.2023.1051510] [download pdf]

Viver, T., R.E. Conrad, M. Lucio, M. Harir, M. Urdiain, J.F. Gago, A. Suárez-Suárez, E. Bustos-Caparros, R. Sanchez-Martinez, E. Mayol, F. Fassetta, J. Pang, I.M. Gridan, S. Venter, F. Santos, B. Baxter, M.E. Llames, A. Cristea, H.L. Banciu, B.P. Hedlund, M.B. Stott, P. Kämpfer, R. Amann, P. Schmitt-Kopplin, K.T. Konstantinidis, and R. Rossello-Mora. 2023. De­scrip­tion of two cul­tiv­ated and two un­cul­tiv­ated new Sa­lin­i­bac­ter spe­cies, one named fol­low­ing the rules of the bac­teri­olo­gical code: Salinibacter grassmerensis sp. nov.; and three named fol­low­ing the rules of the Se­q­Code: Salinibacter pepae sp. nov., Salinibacter abyssi sp. nov., and Salinibacter pampae sp. nov. Syst. Appl. Mi­cro­biol. 46:126416. [doi:10.1016/j.syapm.2023.126416] [download pdf]

Sidhu, C., I.V. Kirstein, C.L. Meunier, J. Rick, V. Fofonova, K.H. Wiltshire, N. Steinke, S. Vidal-Melgosa, J.-H. Hehemann, B. Huettel, T. Schweder, B.M. Fuchs, R.I. Amann, and H. Teeling. 2023. Dis­solved stor­age glycans shaped the com­munity com­pos­i­tion of abund­ant bac­terioplank­ton clades dur­ing a North Sea spring phyto­plank­ton bloom. Mi­cro­bi­ome. 11:77. [doi:10.1186/s40168-023-01517-x] [download pdf]

Orellana, L.H., K. Krüger, C. Sidhu, R. Amann. 2023. Com­par­ing gen­omes re­covered from time-series meta­gen­omes us­ing long- and short-read se­quen­cing tech­no­lo­gies. Mi­cro­bi­ome 11:105. [doi:10.1186/s40168-023-01557-3] [download pdf]

Brüwer, J.D., H.L. Orellana, C. Sidhu, H.C.L. Klip, C.L. Meunier, M. Boersma, K.H. Wiltshire, R. Amann, B.M. Fuchs and J.-B. Raina. 2023. In situ cell di­vi­sion and mor­tal­ity rates of SAR11, SAR86, Bacteroidetes, and Aurantivirga dur­ing phyto­plank­ton blooms re­veal dif­fer­ences in pop­u­la­tion con­trols. mSys­tems, En­viron. Mi­cro­biol. 8:e01287-22. [doi:10.1128/msystems.01287-22] [download pdf]

Priest, T., W.-J. von Appen, E. Oldenburg, O. Popa, S. Torres-Valdés, C. Bienhold, K. Metfies, W. Boulton, T. Mock, B.M. Fuchs, R. Amann, A. Boetius, M. Wietz. 2023. At­lantic wa­ter in­flux and sea-ice cover drive taxo­nomic and func­tional shifts in Arc­tic mar­ine bac­terial com­munit­ies. ISME J. 17:1612-25. [doi:10.1038/s41396-023-01461-6] [download pdf]

Liu, Y., T. Brinkhoff, M. Berger, A. Poehlein, S. Voget, L. Paoli, S. Sunagawa, R. Amann and M.Simon. 2023. Meta­gen­ome-as­sembled gen­omes re­veal greatly ex­pan­ded taxo­nomic and func­tional di­ver­si­fic­a­tion of the abund­ant mar­ine Roseobacter RCA cluster. Mi­cro­bi­ome 11:265. [doi:10.1186/s40168-023-01644-5] [download pdf]

Rodriguez-R, L.M., R.E. Conrad, T. Viver, D.J. Feistel, B.G. Lindner, S.N. Venter, L.H. Orellana, R. Amann, R. Rossello-Mora, K.T. Konstantinidis. 2023. An ANI gap within bac­terial spe­cies that ad­vances the defin­i­tions of in­tra-spe­cies units. mBio 15:e02696-23. [doi:10.1128/mbio.02696-23] [download pdf]

Lu, D.-C., F.-Q. Wang, R.I. Amann, H. Teeling and Z.-J. Du. 2023. Epi­phytic com­mon core bac­teria in the mi­cro­bi­o­mes of co-loc­ated green (Ulva), brown (Saccharina) and red (Grateloupia, Gelidium) mac­roal­gae. Mi­cro­bi­ome. 11:126. [doi.org/10.1186/s40168-023-01559-1] [download pdf]

Priest T., S. Vidal-Melgosa, J.-H. Hehemann, R. Amann and B.M. Fuchs. 2023. Car­bo­hydrates and car­bo­hydrate de­grad­a­tion gene abund­ance and tran­scrip­tion in At­lantic wa­ters of the Arc­tic. ISME Com­mun. 3:130. [doi.org/10.1038/s43705-023-00324-7] [download pdf]

 

2022

Priest, T.,  A. Heins, J. Harder, R. Amann, and B.M. Fuchs. 2022. Niche partitioning of the ubiquitous and ecologically relevant NS5 marine group. ISME J. 16:1570-82. [doi:10.1038/s41396-022-01209-8] [download pdf]

Dede, B., C.T. Hansen, R. Neuholz, B. Schnetger, C. Kleint, S. Walker, W. Bach, R. Amann, and A. Meyerdierks. 2022. Niche differentiation of sulfur-oxidizing bacteria (SUP05) in submarine hydrothermal plumes. ISME J. 16:1479-90. [doi:10.1038/s41396-022-01195-x] [download pdf]

Solanki, V., K. Krüger, C.J. Crawford, A. Pardo-Vargas, J. Danglad-Flores, K. Le Mai Hoang,  L. Klassen, D.W. Abbott, P.H. Seeberger, R.I. Amann, H. Teeling, J.-H. Hehemann. 2022. Glyc­os­ide hy­dro­lase from the GH76 fam­ily in­dic­ates that mar­ine Sale­gen­tibac­ter sp. Hel_I_6 con­sumes al­pha-man­nan from fungi. ISME J. 16:1818-30. [doi:10.1038/s41396-022-01223-w] [download pdf]

Giljan, G., C. Arnosti, I.V. Kirstein, R. Amann, and B.M. Fuchs. 2022. Strong sea­sonal dif­fer­ences of bac­terial poly­sac­char­ide util­iz­a­tion in the North Sea over an an­nual cycle. En­vi­ron. Mi­cro­bi­ol. 24:2333-47. [doi:10.1111/1462-2920.15997] [download pdf]

Orellana, L.H., T.B. Francis, M. Ferraro, J.H. Hehemann, B.M. Fuchs, and R.I. Amann. 2022. Verrucomicrobiota are spe­cial­ist con­sumers of sulfated methyl pentoses dur­ing di­atom blooms. ISME J. 16:630-41. [doi:10.1038/s41396-021-01105-7] [download pdf]

Bartlau, N., A. Wichels, G. Krohne, E.M. Adriaenssens, A. Heins, B.M. Fuchs, R. Amann, C. Moraru. 2022. Highly di­verse fla­vobac­terial phages isol­ated from North Sea spring blooms. ISME J. 16:555–68. [doi:10.1038/s41396-021-01097-4] [download pdf]

Alonso, C., E. Pereira, F. Bertoglio, M. De Caceres, and R. Amann. 2022. Bac­terioplank­ton com­pos­i­tion as an in­dic­ator of en­vir­on­mental status: proof of prin­ciple us­ing in­dic­ator value ana­lysis of es­tu­ar­ine com­munit­ies. Aqua­tic Mi­crob. Ecol. 88:1-18. [doi:10.3354/ame01979] [download pdf]

 

2021

Zeugner, L.E., K. Krüger, J. Barrero-Canosa, R.I. Amann, and B.M. Fuchs.  2021. In situ visu­al­iz­a­tion of glyc­os­ide hy­dro­lase fam­ily 92 genes in mar­ine flavobac­teria.  ISME Com­mun. 1:81. [doi:10.1038/s43705-021-00082-4] [download pdf]

Francis, B., T. Urich, A. Mikolasch, H. Teeling, and R. Amann. 2021. North Sea spring bloom-as­so­ci­ated Gammaproteobacteria fill di­verse het­ero­trophic niches. Env. Mi­cro­bi­ome 16:15.  [doi:10.1186/s40793-021-00385-y] [download pdf]

Brunet, M., N. Le Duff, B.M. Fuchs, R. Amann, T. Barbeyron, F. Thomas. 2021. Spe­cific de­tec­tion and quan­ti­fic­a­tion of the mar­ine fla­vobac­terial genus Zobellia on mac­roal­gae us­ing novel qPCR and CARD-FISH as­says. Syst. Appl. Mi­cro­bi­ol. 44:126269. [doi:10.1016/j.syapm.2021.126269]

Alejandre-Colomo, C., B. Francis, T. Viver, J. Harder, B.M. Fuchs, R. Rossello-Mora, and R. Amann. 2021. Cul­tiv­able Winogradskyella spe­cies are ge­n­om­ic­ally dis­tinct from the sym­patric abund­ant can­did­ate spe­cies. ISME Com­mun. 1:51. [doi:10.1038/s43705-021-00052-w] [download pdf]

Heins, A., R.I. Amann, J. Harder. 2021. Cul­tiv­a­tion of particle-as­so­ci­ated het­ero­trophic bac­teria dur­ing a spring phyto­plank­ton bloom in the North Sea. Syst. Appl. Mi­cro­biol. 44:126232. [doi:10.1016/j.syapm.2021.126232]

Priest, T., L.H. Orellana, B. Huettel, B.M. Fuchs, R. Amann. 2021. Mi­cro­bial meta­gen­ome-as­sembled gen­omes of the Fram Strait from short and long read se­quen­cing plat­forms. PeerJ 9:e11721. [doi:10.7717/peerj.11721] [download pdf]

Miksch, S., M. Mei­ners, A. Mey­er­dier­ks, D. Pro­bandt, G. We­ge­ner, J. Tit­schack, M.A. Jen­sen, A. Ell­rott, R. Amann and K. Knit­tel. 2021. Bac­te­ri­al com­mu­nit­ies in tem­pe­ra­te and po­lar co­as­tal sands are sea­so­nal­ly sta­ble. ISME Com­mun. 1:29. [doi:10.1038/s43705-021-00028-w] [download pdf]

Ludwig, W., T. Viver, R. Westram, J.F. Gago, E. Bustos-Caparros, K. Knittel, R. Amann, R. Rossello-Mora. 2021. Re­lease LT­P_12_2020, fea­tur­ing a new ARB align­ment and im­proved 16S rRNA tree for proka­ryotic type strains. Syst. Appl. Mi­cro­biol. 44:126218. [doi:10.1016/j.syapm.2021.126218]

Heins, A., G. Reintjes, R.I. Amann, J. Harder. 2021. Particle Col­lec­tion in Im­hoff Sed­i­ment­a­tion Cones En­riches Both Motile Chemotactic and Particle-At­tached Bac­teria. Front. Mi­cro­biol. 12:643730. [doi:10.3389/fmicb.2021.643730] [download pdf]

Viver, T., R.E. Conrad, L.H. Orellana, M. Urdiain, J.E. González-Pastor, J.K. Hatt, R. Amann, J. Anton, K.T. Konstantinidis, R. Rosselló-Móra. 2021. Dis­tinct eco­types within a nat­ural haloar­chaeal pop­u­la­tion en­able ad­apt­a­tion to chan­ging en­vir­on­mental con­di­tions without caus­ing pop­u­la­tion sweeps. ISME J. 15:1178-91. [doi:10.1038/s41396-020-00842-5] [internal download]

Arnosti, C., M. Wietz, T. Brinkhoff, J.H. Hehemann, D. Probandt, L. Zeugner, and R. Amann. 2021. The Biogeo­chem­istry of Mar­ine Poly­sac­char­ides: Sources, In­vent­or­ies, and Bac­terial Drivers of the Car­bo­hydrate Cycle. Ann. Rev. Mar. Sci. 13:81-108. [doi:10.1146/annurev-marine-032020-012810] [internal download]

Francis, T.B., D. Bartosik, T. Sura, A. Sichert, J.H. Hehemann, S. Markert, T. Schweder, B.M. Fuchs, H. Teeling, R.I. Amann, and D. Becher. 2021. Chan­ging ex­pres­sion pat­terns of TonB-de­pend­ent trans­port­ers sug­gest shifts in poly­sac­char­ide con­sump­tion over the course of a spring phyto­plank­ton bloom. ISME J. 15:2336-50. [doi:10.1038/s41396-021-00928-8] [download pdf]

Klassen, L., G. Reintjes, J.P. Tingley, D.R. Jones, J.H. Hehemann, A.D. Smith, T.D. Schwinghamer, C. Arnosti, L. Jin, T.W. Alexander, D. Thomas, R.I. Amann, T.A. McAllister, and D.W. Abbott. 2021. Quan­ti­fy­ing fluor­es­cent glycan up­take to elu­cid­ate strain-level vari­ab­il­ity in for­aging be­ha­vi­ors of ru­men bac­teria. Mi­cro­bi­ome 9:23. [doi:10.1186/s40168-020-00975-x] [download pdf]

Priest, T., B. Fuchs, R. Amann, and M. Reich. 2021. Di­ver­si­ty and bio­mass dy­na­mics of uni­cel­lu­lar ma­ri­ne fun­gi du­ring a spring phy­to­plank­ton bloom. En­vi­ron. Mi­cro­bi­ol. 23:448-463. [doi:10.1111/1462-2920.15331] [download pdf]

Vidal-Melgosa, S., A. Sichert, T.B. Francis, D. Bartosik, J. Niggemann, A. Wichels, W.G.T. Willats, B.M. Fuchs, H. Teeling, D. Becher, T. Schweder, R.I. Amann, and J.H. Hehemann. 2021. Di­atom fucan poly­sac­char­ide pre­cip­it­ates car­bon dur­ing algal blooms. Nature Com­mun. 12:1150. [doi:10.1038/s41467-021-21009-6] [download pdf]

Isaac, A., B. Francis, R.I. Amann, S.A. Amin. 2021. Tight Ad­her­ence (Tad) Pilus Genes In­dic­ate Pu­tat­ive Niche Dif­fer­en­ti­ation in Phyto­plank­ton Bloom As­so­ci­ated Rhodobacterales. Front. Mi­cro­biol. 12:718297. [doi:10.3389/fmicb.2021.718297] [download pdf]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R.I., and F. Aspetsberger. 2021. Süßes Fest­mahl mit mehr­eren Gän­gen: wie Bak­ter­ien Al­gen ver­naschen. BiuZ 51:66-73. [doi:10.11576/biuz-4104] [download pdf]

 

2020

Reintjes, G., B.M. Fuchs, R. Amann, and C. Arnosti. 2020. Ex­tens­ive Mi­cro­bial Pro­cessing of Poly­sac­char­ides in the South Pa­cific Gyre via Selfish Up­take and Ex­tra­cel­lu­lar Hy­dro­lysis. Front. Mi­cro­biol. 11:583158. [doi:10.3389/fmicb.2020.583158] [download pdf]

Viver, T., R.E. Conrad, L.H. Orellana, M. Urdiain, J.E. González-Pastor, J.K. Hatt, R. Amann, J. Antón, K.T. Konstantinidis, and R. Rosselló-Móra. 2020. Dis­tinct eco­types within a nat­ural haloar­chaeal pop­u­la­tion en­able ad­apt­a­tion to chan­ging en­vir­on­mental con­di­tions without caus­ing pop­u­la­tion sweeps. ISME J. On­line ahead of print. [doi:10.1038/s41396-020-00842-5]

Alejandre-Colomo, C., T. Viver, M.Urdiain, B. Francis, J. Harder, P. Kämpfer, R. Amann, and R. Rosselló-Móra. 2020. Taxo­nomic study of nine new Winogradskyella spe­cies oc­cur­ring in the shal­low wa­ters of Hel­go­land Roads, North Sea. Pro­posal of Winogradskyella schleiferi sp. nov., Winogradskyella costae sp. nov., Winogradskyella helgolandensis sp. nov., Winogradskyella vidalii sp. nov., Winogradskyella forsetii sp. nov., Winogradskyella ludwigii sp. nov., Winogradskyella ursingii sp. nov., Winogradskyella wichelsiae sp. nov., and Candidatus “Wino­grad­skyella at­lantica” sp. nov. Syst. Appl. Mi­cro­biol. 43:126128. [doi:10.1016/j.syapm.2020.126128]

Murray, A.E., J. Freudenstein, S. Gribaldo, R. Hatzenpichler, P. Hugenholtz, P.  Kämpfer, K.T. Konstantinidis, C.E. Lane, R.T. Papke, D.H. Parks, R. Rossello-Mora, M.B. Stott, I.C. Sutcliffe, J.C. Thrash, S.N. Venter, W.B. Whitman, S.G. Acinas, R.I. Amann, K. Anantharaman, J. Armengaud, B.J. Baker, R.A. Barco, H.B. Bode, E.S. Boyd, C.L. Brady, P. Carini, P.S.G. Chain, D.R. Colman, K.M. DeAngelis, D. de Los Rios MA, Estrada-de Los Santos P, Dunlap CA, Eisen JA, Emerson D, Ettema TJG, Eveillard, P.R. Girguis, U. Hentschel, J.T. Hollibaugh, L.A. Hug, W.P. Inskeep, E.P. Ivanova, H.P. Klenk, W.J. Li, K.G. Lloyd, F.E. Löffler, T.P. Makhalanyane, D.P. Moser, T. Nunoura, M. Palmer, V. Parro, C. Pedrós-Alió, A.J. Probst, T.H.M. Smits, A.D. Steen, E.T. Steenkamp, A. Spang, F.J. Stewart, J.M. Tiedje, P. Vandamme, M. Wagner, F.P. Wang, P. Yarza, B.P. Hedlund, A.L. Reysenbach. 2020. Roadmap for nam­ing un­cul­tiv­ated Ar­chaea and Bac­teria. Nat. Mi­cro­biol. 5:987-94. [doi:10.1038/s41564-020-0733-x] [download pdf]

Grieb, A., T.B. Francis, K. Krüger, L.H. Orellana Retamal, R.I. Amann, and B.M. Fuchs. 2020.  Candidatus Ab­dit­ibac­ter, a novel genus within the Cryomorphaceae, thriv­ing in the North Sea. Syst. Appl. Mi­cro­biol. 43:126088. [doi:10.1016/j.syapm.2020.126088] [download pdf]

Hahn, C.J., R. Laso-Perez, F. Vulcano, K.-M. Vaziorakis, R. Stokke, I.H. Steen, A. Teske, M. Liebeke, K. Knittel, R. Amann and G. Wegener. 2020. "Candidatus Eth­an­opere­dens," a Ther­mo­philic Genus of Archaea Me­di­at­ing the An­aer­obic Ox­id­a­tion of Eth­ane. mBio 11:e00600-20. [doi:10.1128/mBio.00600-20] [download pdf]

Giljan, G., N.A. Kamennaya, A. Otto, D. Becher, A. Ellrott, V. Meyer, B.J. Murton, B.M. Fuchs, R.I. Amann, and M.V. Zubkov. 2020. Bac­terioplank­ton re­veal years-long re­ten­tion of At­lantic deep-ocean wa­ter by the tropic Seamount. Sci­ent. Rep. 10:4715. [doi:10.1038/s41598-020-61417-0] [download pdf]

Avci, B., K. Krüger, B.M. Fuchs, H. Teeling, R.I. Amann. 2020. Poly­sac­char­ide niche par­ti­tion­ing of dis­tinct Polaribacter clades dur­ing North Sea spring algal blooms. ISME J. 14:1369-83. [doi:10.1038/s41396-020-0601-y] [download pdf]

Konstantinidis, K.T., R. Rosselló-Móra, and R. Amann. 2020. Ad­vant­ages out­weigh con­cerns about us­ing gen­ome se­quence as type ma­ter­ial for proka­ryotic tax­onomy. En­vi­ron. Mi­cro­bi­ol. 22:819-22. [doi:10.1111/1462-2920.14934] [internal download]

Alejandre-Colomo, C., J. Harder, B.M. Fuchs, R. Rosselló-Móra, R. Amann. 2020. High-through­put cul­tiv­a­tion of het­ero­trophic bac­teria dur­ing a spring phyto­plank­ton bloom in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126066. [doi:10.1016/j.syapm.2020.126066] [internal download]

Munoz, R., H. Teeling, R. Amann, R. Rosselló-Móra. 2020. An­ces­try and ad­apt­ive ra­di­ation of Bacteroidetes as as­sessed by com­par­at­ive ge­n­om­ics. Syst. Appl. Mi­cro­bi­ol. 43:126065. [doi:10.1016/j.syapm.2020.126065] [internal download]

Reintjes, G., B.M. Fuchs, M. Scharfe, K.H. Wiltshire, R. Amann, C. Arnosti. 2020. Short-term changes in poly­sac­char­ide util­iz­a­tion mech­an­isms of mar­ine bac­terioplank­ton dur­ing a spring phyto­plank­ton bloom. En­viron. Mi­cro­biol. 22:1884-1900. [doi:10.1111/1462-2920.14971] [internal download]

Wiegand, S., M. Jogler, C. Boedeker, D. Pinto, J. Vollmers, E. Rivas-Marín, T. Kohn, S.H. Peeters, A. Heuer, P. Rast, S. Oberbeckmann, B. Bunk, O. Jeske, A. Meyerdierks, J. E. Storesund, N. Kallscheuer, S. Lücker, O.M. Lage, T. Pohl, B.J. Merkel, P. Hornburger, R.-W. Müller, F. Brümmer, M. Labrenz, A.M. Spormann, H.J.M. Op den Camp, J. Overmann, R. Amann, M.S.M. Jetten, T. Mascher, M.H. Medema, D.P. Devos, A.-K. Kaster, L. Øvreås, M. Rohde, M.Y. Galperin, C. Jogler. 2020. Cul­tiv­a­tion and func­tional char­ac­ter­iz­a­tion of 79 Planctomycetes un­cov­ers their unique bio­logy. Nature Mi­cro­biol. 5:126-40. [doi:10.1038/s41564-019-0588-1] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Schweder, T., U. Bornscheuer, J.H. Hehemann, R. Amann. 2020. Bak­ter­i­elle Mech­an­is­men der mar­inen Poly­sac­char­id­verwer­tung. BIOspek­trum 26:800-2. [doi:10.1007/s12268-020-1489-9] [download pdf]

 

2019

Orellana, L.H., T.B. Francis, K. Krüger, H. Teeling, M.-C. Müller, B.M. Fuchs, K.T. Kon­stantin­idis, and R.I. Amann. 2019. Niche dif­fer­en­ti­ation among an­nu­ally re­cur­rent coastal Mar­ine Group II Euryar­chae­ota. ISME J. 13:3024-36. [doi:10.1038/s41396-019-0491-z] [download pdf]

Schada von Borzyskowski, L., F. Severi, K. Krüger, L. Hermann, A. Gilardet, F. Sippel, B. Pommerenke, P. Claus, N.S. Cortina, T. Glatter, S. Zauner, J. Zarzycki, B.M. Fuchs, E. Bremer, U.G. Maier, R.I. Amann, T.J. Erb. 2019. Mar­ine Pro­teo­bac­teria meta­bol­ize gly­col­ate via the beta-hy­droxy­as­part­ate cycle. Nature. 575:500-4. [doi:10.1038/s41586-019-1748-4] [internal download]

Krüger, K., M. Chafee, T. Ben Francis, T.G. del Rio, D. Becher, T. Schweder, R.I. Amann, H. Teeling. 2019. In mar­ine Bacteroidetes the bulk of glycan de­grad­a­tion dur­ing al­gae blooms is me­di­ated by few clades us­ing a re­stric­ted set of genes. ISME J. 13:2800-16. [doi:10.1038/s41396-019-0476-y] [download pdf]

Viver, T., L.H. Orellana, S. Diaz, M. Urdiain, M.D. Ramos-Barbero, J.E. Gonzalez-Pastor, A. Oren, J.K. Hatt, R. Amann, J. Anton, K.T. Konstantinidis, R. Rossello-Mora. 2019. Pre­dom­in­ance of de­term­in­istic mi­cro­bial com­munity dy­nam­ics in salt­erns ex­posed to dif­fer­ent light in­tens­it­ies. En­viron. Micri­obiol. 21:4300-15. [doi:10.1111/1462-2920.14790] [internal download]

Pjevac, P., S. Dyksma, T. Goldhammer, I. Mujakic, M. Koblizek, M. Mussmann, R. Amann, S. Orlic. 2019. In situ abund­ance and car­bon fix­a­tion activ­ity of dis­tinct an­oxy­genic pho­to­trophs in the strat­i­fied sea­wa­ter lake Ro­gozn­ica. En­viron. Micri­obiol. 21:3896-908. [doi:10.1111/1462-2920.14739] [internal download]

Reint­jes, G., H.E. Te­get­mey­er, M. Bür­gis­ser, S. Or­lić, I. Tews, M. Zub­kov, D. Voß, O. Zie­lin­ski, C. Quast, F.O. Glöck­ner, R. Amann, T.G. Fer­de­l­man, B.M. Fuchs. 2019. On site ana­lysis of bac­ter­ial com­mu­nit­ies of the ul­tra-oli­go­trophic South Pa­cific Gyre. Appl. En­vi­ron. Mi­cro­bi­ol. 85(14). [doi:10.1128/AEM.00184-19] [internal download]

Ramirez, A.S., O.M. Vega-Orellana, T. Viver, J.B. Poveda, R.S. Rosales, C.G. Poveda, J. Spergser, M.P. Szostak, M.J. Caballero, L. Ressel, J.M. Bradbury, M.M. Tavio, S. Karthikeyan, R. Amann, K.T. Konstantinidis, R. Rossello-Mora. 2019. First de­scrip­tion of two mod­er­ately halo­philic and psychro­tol­er­ant Mycoplasma spe­cies isol­ated from ceph­alo­pods and pro­posal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov. Syst. Appl. Mi­cro­biol. 42:457-67. [doi:10.1016/j.syapm.2019.04.003]

Hehemann, J.H., G. Reintjes, L. Klassen, A.D. Smith, D. Ndeh, C. Arnosti, R. Amann, D.W. Abbott. 2019. Single cell fluor­es­cence ima­ging of glycan up­take by in­test­inal bac­teria. ISME J. 13:1883-89. [doi:10.1038/s41396-019-0406-z] [download pdf]

Reintjes, G., C. Arnosti, B. Fuchs, R. Amann. 2019. Selfish, shar­ing and scav­en­ging bac­teria in the At­lantic Ocean: a biogeo­graph­ical study of bac­terial sub­strate util­isa­tion. ISME J. 13:1119-32. [doi:10.1038/s41396-018-0326-3] [download pdf]

Meier, D.V., P. Pje­vac, W. Bach, S. Mark­ert, T. Schweder, J. Jam­ieson, S. Petersen, R. Amann, and A. Meyerdierks. 2019. Mi­cro­bial metal-sulf­ide ox­id­a­tion in in­act­ive hy­dro­thermal vent chim­neys sug­ges­ted by meta­ge­n­omic and meta­pro­teo­mic ana­lyses. En­viron. Micri­obiol. 21:682-701.[doi:10.1111/1462-2920.14514] [internal download]

Amann, R.I., S. Baichoo, B.J. Blencowe, P. Bork, M. Borodovsky, C. Brooksbank, P.S.G. Chain, R.R. Colwell, D.G. Daffonchio, A. Danchin, V. de Lorenzo, P.C. Dorrestein, R.D. Finn, C.M. Fraser, J.A. Gilbert, S.J. Hallam, P. Hugenholtz, J.P.A. Ioannidis, J.K. Jansson, J.F. Kim, H.-P. Klenk, M.G. Klotz, R. Knight, K.T. Konstantinidis, N.C. Kyrpides, C.E. Mason, A.C. McHardy, F. Meyer, C.A. Ouzounis, A.A.N. Patrinos, M. Podar, K.S. Pollard, J. Ravel, A. Reyes Muñoz, R.J. Roberts, R. Rosselló-Móra, S.-A. Sansone, P.D. Schloss, L.M. Schriml, J.C. Setubal, R. Sorek, R.L. Stevens, J.M. Tiedje, A. Turjanski, G.W. Tyson, D.W. Ussery, G.M. Weinstock, O. White, W.B. Whitman, I. Xenarios. 2019. To­wards un­res­tric­ted use of pub­lic ge­n­omic data. Sci­ence 363:350-2. [doi:10.1126/science.aaw1280] [internal download]

Konstantinidis, K.T., R. Rossello-Mora, and R. Amann. 2019. Mov­ing the cata­loguing of the "un­cul­tiv­ated ma­jor­ity" for­ward. Syst. Appl. Mi­cro­biol. 42:3-4. [doi:10.1016/j.syapm.2018.12.001] [internal download]

Francis, T.B., K. Krüger, B.M. Fuchs, H. Teeling, and R.I. Amann. 2019. Candidatus Pro­silii­co­c­cus ver­nus, a spring phyto­plank­ton bloom as­so­ci­ated mem­ber of the Flavobacteriaceae. Syst. Appl. Mi­cro­biol. 42:41-53. [doi:10.1016/j.syapm.2018.08.007] [internal download]

Kappelmann, L., K. Krüger, J.H. Hehemann, J. Harder, S. Markert, F. Unfried, D. Becher, N. Shapiro, T. Schweder, R.I. Amann, and H. Teeling. 2019. Poly­sac­char­ide util­iz­a­tion loci of North Sea Flavobacteriia as basis for us­ing SusC/​D-pro­tein ex­pres­sion for pre­dict­ing ma­jor phyto­plank­ton glycans. ISME J. 13:76-91. [doi:10.1038/s41396-018-0242-6] [download pdf]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R.. 2019. Das Früh­jahrsmik­robiom der süd­lichen Nord­see: Bac­terioplank­ton-Sukzes­sionen und bak­ter­i­elle Poly­sac­char­id­verwer­tung in einem Küst­en­meer. In: Die unbekannte Welt der Mikrobiome - Rundgespräche Forum Ökologie, pp. 31-41. Bayr­ische Akademie der Wis­senschaften (Eds.) Ver­lag Dr. Pfeil, München, Ger­many. [download pdf]

Amann, R., D. Schüler. 2019. Mit mo­d­ernen Meth­oden zu mag­net­ischen Mik­roben. BIOspek­trum 25:18-21.  [doi:10.1007/s12268-019-0993-2]

Amann, R.. 2019. Öffent­liche Se­quen­zdaten soll­ten rasch wirk­lich frei zugäng­lich sein! BIOspek­trum 25:119. [doi:10.1007/s12268-019-1016-z] [download pdf]

 

2018

Unfried, F., S. Becker, C.S. Robb, J.H. Hehemann, S. Markert, S.E. Heiden, T. Hinzke, D. Becher, G. Reintjes, K. Krüger, B. Avcı, L. Kappelmann, R.L. Hahnke, T. Fischer, J. Harder, H. Teeling, B. Fuchs, T. Barbeyron, R.I. Amann, and T. Schweder. 2018. Ad­apt­ive mech­an­isms that provide com­pet­it­ive ad­vant­ages to mar­ine bac­teroid­etes dur­ing mi­croalgal blooms. ISME J. 12:2894-906. [doi:10.1038/s41396-018-0243-5] [download pdf]

Chen, J., C.S. Robb, F. Unfried, L. Kappelmann, S. Markert, T. Song, J. Harder, B. Avcı, D. Becher, P. Xie, R.I. Amann, J.H. Hehemann, T. Schweder, and H. Teeling. 2018. Al­pha- and beta-man­nan util­iz­a­tion by mar­ine Bacteroidetes. En­vi­ron. Mi­cro­bi­ol. 20:4127-40. [doi:10.1111/1462-2920.14414] [download pdf]

Arnosti, C., G. Reintjes, R. Amann. 2018. A mech­an­istic mi­cro­bial un­der­pin­ning for the size-re­act­iv­ity con­tinuum of dis­solved or­ganic car­bon de­grad­a­tion. Mar. Chem. 206:91-9. [doi:10.1016/j.marchem.2018.09.008] [internal download]

Jiao, N.Z., R.H. Cai, Q. Zheng, K. Tang, J.H. Liu, F.L.E Jiao, D. Wallace, F. Chen, C. Li, R. Amann, R. Benner, and F. Azam. 2018. Un­veil­ing the en­igma of re­fract­ory car­bon in the ocean. Natl. Sci. Rev. 5:459-63. [doi:10.1093/nsr/nwy020] [internal download]

Viver, T., L. Orellana, P. González-Torres, S. Díaz, M. Urdiain, M.E. Farías, V. Benes, P. Kaempfer, A. Shahinpei, M. Ali Amoozegar, R. Amann, J. Antón, K.T. Konstantinidis, R. Rosselló-Móra. 2018. Ge­n­omic com­par­ison between mem­bers of the Salinibacteraceae fam­ily, and de­scrip­tion of a new spe­cies of Salinibacter (Salinibacter altiplanensis sp. nov.) isol­ated from high alti­tude hy­per­saline en­vir­on­ments of the Ar­gen­tinian Al­ti­plano.  Syst. Appl. Mi­cro­bi­ol. 41:198-212. [doi:10.1016/j.syapm.2017.12.004] [internal download]

Pjevac, P., D.V. Meier, S. Markert, C. Hentschker, T. Schweder, D. Becher, H.R. Gruber-Vodicka, M. Richter, W. Bach, R. Amann, and A. Meyerdierks. 2018. Meta­pro­teo­ge­n­omic Pro­fil­ing of Mi­cro­bial Com­munit­ies Col­on­iz­ing Act­ively Vent­ing Hy­dro­thermal Chim­neys. Fron­tiers Mi­cro­bi­ol. 9:680. [doi:10.3389/fmicb.2018.00680] [download pdf]

Konstantinidis, K.T., R. Rosselló-Móra, and R. Amann. 2018. Reply to the com­ment­ary “Un­cul­tiv­ated mi­crobes—in need of their own no­men­clature?”. ISME J. 12:653-4. [doi:10.1038/s41396-017-0011-y] [internal download]

Pro­bandt, D., T. Eick­horst, A. Ellrott, R. Amann, and K. Knit­tel. 2018. Mi­cro­bi­al life on a sand grain: from bulk se­di­ment to sin­gle grains. ISME J. 12:623-33. [doi:10.1038/ismej.2017.197] [download pdf]

Chafee, M., A. Fernandez-Guerra, P.L. Buttigieg, G. Gerdts, A.M. Eren, H. Teeling, and R.I. Amann. 2018. Re­cur­rent pat­terns of mi­cro­di­versity in a tem­per­ate coastal mar­ine en­vir­on­ment. ISME J. 12:237-52. [doi:10.1038/ismej.2017.165] [download pdf]

 

2017

Munoz, R., R. Rossello-Mora, R. Amann. 2017. Cor­ri­gendum to “Re­vised phylo­geny of Bacteroidetes and pro­posal of six­teen new taxa and two new com­bin­a­tions in­clud­ing Rhodothermaeota phyl. nov” [Syst. Appl. Mi­cro­biol. 39 (7) (2016) 491–492]. Syst. Appl. Mi­cro­bi­ol. 40:190.  [doi:10.1016/j.syapm.2017.03.001] [internal download]

Reintjes, G., C. Arnosti, B.M. Fuchs, and R. Amann. 2017. An al­tern­at­ive poly­sac­char­ide up­take mech­an­ism in mar­ine bac­teria. ISME J. 11:1640-50. [doi:10.1038/ismej.2017.26] [download pdf]

Panschin, I., M. Becher, S. Verbarg, C. Spröer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, and R.L. Hahnke. 2017. De­scrip­tion of Gramella forsetii sp. nov., a mar­ine Flavobacteriaceae isol­ated from North Sea wa­ter, and emen­ded de­scrip­tion of Gramella gaetbulicola Cho et al. 2011. Int. J. Syst. Evol. Mi­cro­biol. 67: 697-703. [doi:10.1099/ijsem.0.001700] [internal download]

Meier, D.V., P. Pjevac, W. Bach, S. Hourdez, P.R. Girguis, C. Vidoudez, R. Amann, and A. Meyerdierks. 2017. Niche par­ti­tion­ing of di­verse sul­fur-ox­id­iz­ing bac­teria at hy­dro­thermal vents. ISME J. 11:1545-58. [doi:10.1038/ismej.2017.37] [internal download]

Stagars, M.H., S. Mishra, T. Treude, R. Amann, and K. Knittel. 2017. Mi­cro­bial Com­munity Re­sponse to Sim­u­lated Pet­ro­leum Seep­age in Caspian Sea Sed­i­ments. Fron­ti­ers Mi­cro­biol. 8:764. [doi:10.3389/fmicb.2017.00764] [download pdf]

Avci, B., R.L. Hahnke, M. Chafee, T. Fischer, H. Gruber-Vodicka, H. Tegetmeyer, J. Harder, B.M. Fuchs, R.I. Amann, and H. Teeling. 2017. Ge­n­omic and physiolo­gical ana­lyses of ‘Reinekea forsetii’ re­veal a ver­sat­ile op­por­tun­istic life­style dur­ing spring al­gae blooms. En­viron. Mi­cro­biol. 19:1209-21. [doi:10.1111/1462-2920.13646] [internal download]

Boedeker, C., M. Schüler, G. Reintjes, O. Jeske, M.C.F. van Teeseling, M. Jogler, P. Rast, D. Borchert, D.P. Devos, M. Kucklick, M. Schaffer, R. Kolter, L. van Niftrik, S. Engelmann, R. Amann, M. Rohde, H. Engelhardt, and C. Jogler. 2017. De­term­in­ing the bac­terial cell bio­logy of Planctomycetes. Nat. Com­mun. 8:14853. [doi:10.1038/ncomms14853] [download pdf]

Hehemann, J.H., L. Van Truong, F. Unfried, N. Welsh, J. Kabisch, S.E. Heiden, S. Junker, D. Becher, A. Thürmer, R. Daniel, R. Amann, and T. Schweder. 2017. Aquatic ad­apt­a­tion of a lat­er­ally ac­quired pec­tin de­grad­a­tion path­way in mar­ine gamapro­teo­bac­teria. En­viron. Mi­cro­biol. 19:2320-33. [doi:10.1111/1462-2920.13726] [internal download]

Viver, T., L.H. Orellana, J.K. Hatt, M. Urdiain, S. Diaz, M. Richter, J. Anton, M. Avian, R. Amann, K.T. Konstantinidis, and R. Rossello-Mora. 2017. Novel taxa dom­in­ate the low di­versity mi­cro­bi­ome of the jelly­fish Cotylorhiza tuberculata. En­viron. Mi­cro­biol. 19:3039-58. [doi:10.1111/1462-2920] [internal download]

Probandt, D., K. Knittel, H. Tegetmeyer, S. Ahmerkamp, M. Holtappels, and R. Amann. 2017. Per­meab­il­ity shapes bac­terial com­munit­ies in sub­lit­toral sur­face sed­i­ments. En­viron. Mi­cro­biol. 19:1584-99.  [doi:10.1111/1462-2920.13676] [internal download]

Konstantinidis, K.T., R. Rosselló-Móra, R. Amann. 2017. Un­cul­tiv­ated mi­crobes in need of their own tax­onomy. ISME J. 11:2399-406. [doi:10.1038/ismej.2017] [internal download]

Barrero-Canosa, J., C. Moraru, L. Zeugner, B.M. Fuchs, and R. Amann. 2017. Dir­ect-gene­FISH: a sim­pli­fied pro­tocol for the sim­ul­tan­eous de­tec­tion and quan­ti­fic­a­tion of genes and rRNA in mi­croor­gan­isms. En­viron. Mi­cro­biol. 19:70-82. [doi:10.1111/1462-2920.13432] [internal download]

 

2016

Panschin, I., M. Becher, Susanne Verbarg, C. Spöer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, and R. Hahnke. 2016. De­scrip­tion of Gramella forsetii sp.nov., a mar­ine Flavobacteriaceae isol­ated from North Sea wa­ter, and emen­ded de­scrip­tion of Gramella gaet­bulic­ola Cho et al. 2011. Int. J. Syst. Evol. Mi­cro­biol. 67:697-703. [ncbi page] [internal download]

Barbeyron, T., F. Thomas, V. Barbe, H. Teeling, C. Schenowitz, C. Dossat, A. Goesmann, C. Leblanc, F.O. Glöckner, M. Czjzek, R. Amann, and G. Michel. 2016. Hab­itat und taxon as driv­ing forces of car­bo­hydrate cata­bol­ism in mar­ine het­ero­trophic bac­teria: ex­ample of the model al­gae-as­so­ci­ated bac­terium Zobellia galactanivorans DsijT. En­viron. Mi­cro­biol. 18:4610-27. [ncbi page] [internal download]

Bennke, C.M., K. Krüger, L. Kappelmann, S. Huang, A. Gobet, M. Schüler, V. Barbe, B.M. Fuchs, G. Michel, H. Teeling, and R.I. Amann. 2016. Poly­sac­char­ide util­iz­a­tion loci of Bacteroidetes from two con­trast­ing open ocea sites in the North At­lantic. En­viron. Mi­cro­biol. 18:4456-70. [ncbi page] [internal download]

Meier, D.V., W. Bach, P.R. Girguis, H. Gruber-Vodicka, E.P. Reeves, M. Richter, C. Vidoudez, R. Amann, and A. Meyerdierks. 2016. Het­ero­trophic Proteobacteria in the vi­cin­ity of dif­fuse hy­dro­thermal vent­ing. En­viron. Mi­cro­biol. 18:4348-68. [ncbi page] [internal download]

Pizzetti, I., F. Schulz, T. Tyml, B.M. Fuchs, R. Amann, M. Horn, and S. Fazi. 2016. Chlamydial sea­sonal dy­nam­ics and isol­a­tion of ‘Candidatus Nep­tun­och­lamydia vex­il­lifer­ae’ from a Tyrrhe­nian coastal lake. En­viron. Mi­cro­biol. 18:2405-17. [ncbi page] [internal download]

Amann, R., and R. Rossello-Mora. 2016. After all, only mil­lions? mBio 7:e00999-16. [asm page] [download pdf]

Munoz, R., R. Rossello-Mora, and R. Amann. 2016. Re­vised phylo­geny of Bacteroidetes and pro­posal of six­teen new taxa and two new com­bin­a­tions in­clud­ing Rhodothermaeota phyl. nov. Syst. Appl. Mi­cro­biol. 39:281-96. [ncbi page] [internal download]

Raupach, M.J., R. Amann, Q.D. Wheeler, and C. Roos. 2016. The ap­plic­a­tion of “-om­ics” tech­no­lo­gies for the clas­si­fic­a­tion and iden­ti­fic­a­tion of an­im­als. Org. Divers. Evol. 16:1-12. [springer page] [internal download]

Teeling, H., B.M. Fuchs, C.M. Bennke, K. Krüger, M. Chafee, L. Kappelmann, G. Reintjes, J. Waldmann, C. Quast, F.O. Glöckner, J. Lucas, A. Wichels, G. Gerdts, K.H. Wiltshire, and R.I. Amann. 2016. Re­cur­ring pat­terns in bac­terioplank­ton dy­nam­ics dur­ing coastal spring al­gae blooms. eLife 5:e11888. [ncbi page] [download pdf]

Stagars, M., E. Ruff, R. Amann, and K. Knittel. 2016. High di­versity of an­aer­obic al­kane-de­grad­ing mi­cro­bial com­munit­ies in mar­ine seep sed­i­ments based on (1-methylal­kyl)suc­cin­ate syn­thase genes. Fron­ti­ers Mi­cro­biol. 6:1511. [ncbi page] [download pdf]

 

2015

Bizic-Ionescu, M., M. Zeder, D. Ionescu, S. Orlic, B.M. Fuchs, H.-P. Grossart, and R. Amann. 2015. Com­par­sion of bac­terial com­munit­ies on lim­nic versus coastal mar­ine particles re­veals pro­found dif­fer­ences in col­on­iz­a­tion. En­viron. Mi­cro­biol. 17:3500-14. [ncbi page] [internal download]

Hahnke, R.L., C.M. Bennke, B.M. Fuchs, A.J. Mann, E. Rhiel, H. Teeling, R. Amann, and J. Harder. 2015. Di­lu­tion cul­tiv­a­tion of mar­ine het­ero­trophic bac­teria abund­ant after a spring phyto­plank­ton bloom in the North Sea. En­viron. Mi­cro­biol. 17:3515-26. [ncbi page] [internal download]

Serrano, W., J. Schruebbers, R. Amann, and U. Fischer. 2015. Allochromatium humboldtianum sp. nov., isol­ated from soft coastal sed­i­ments. Int. J. Sys­tem. Evol. Mi­cro­biol. 65:2980-85. [ncbi page] [internal download]

Yamaguchi, T., B.M. Fuchs, R. Amann, S. Kawakami, K. Kubota, M. Hatamoto, and T. Yamaguchi. 2015. Rapid and sens­it­ive iden­ti­fic­a­tion of mar­ine bac­teria by an im­proved in situ DNA hy­brid­iz­a­tion chain re­ac­tion (quick­HCR-FISH). Syst. Appl. Mi­cro­biol. 38:400-5. [ncbi page] [internal download]

Krupke, A., W. Mohr, J. LaRoche, B.M. Fuchs, R.I. Amann, and M.M. Kuypers. 2015. The ef­fect of nu­tri­ents on car­bon and ni­tro­gen fix­a­tion by the UCYN-A-hapto­phyte sym­bi­osis. ISME J. 9:1635-47. [ncbi page] [internal download]

Schleifer, K.H., R. Amann, and R. Rosselló-Móra. 2015. Tax­onomy in the age of ge­n­om­ics. Syst. Appl. Mi­cro­biol. 38:207-8. [ncbi page] [internal download]

Rosselló-Móra, R., and R. Amann. 2015. Past and fu­ture spe­cies defin­i­tions for Bac­teria and Ar­chaea. Syst. Appl. Mi­cro­biol. 38:209-16. [ncbi page] [internal download]

Xing, P., R.L. Hahnke, F. Unfried, S. Markert, S. Huang, T. Barbeyron, J. Harder, D. Becher, T. Schweder, F.O. Glöckner, R.I. Amann, and H. Teeling. 2015. Niches of two poly­sac­char­ide-de­grad­ing Polaribacter isol­ates from the North Sea dur­ing a spring di­atom bloom. ISME J. 9:1410-22. [ncbi page] [internal download]

Korlević, M., P. Pop Ristova, R. Garić, R. Amann,and S. Orlić. 2015. Bac­terial di­versity in the South Ad­ri­atic Sea dur­ing a strong, deep winter con­vec­tion year. Appl. En­viron. Mi­cro­biol. 81:1715-26. [ncbi page] [download pdf]

Thiele, S., B.M. Fuchs, R. Amann, and M.H. Iversen. 2015. Col­on­iz­a­tion in the photic zone and sub­sequent changes dur­ing sink­ing de­term­ine bac­terial com­munity com­pos­i­tion in mar­ine snow. Appl. En­viron. Mi­cro­biol. 81:1463-71.[ncbi page] [download pdf]

Pjevac, P., M. Korlević, J. Berg, E. Bura-Nakic, I. Ciglenecki, R. Amann, and S. Orlić. 2015. Com­munity shift from pho­to­trophic to chemo­trophic sulf­ide ox­id­a­tion fol­low­ing an­oxic holo­mixis in a strat­i­fied sea­wa­ter lake. Appl. En­viron. Mi­cro­biol. 81:298-308. [ncbi page] [download pdf]

 

2014

Winkel, M., P. Pjevac, M. Kleiner, A. Meyerdierks, S. Littmann, R. Amann, and M. Mußmann. 2014. Iden­ti­fic­a­tion and activ­ity of acet­ate-as­sim­il­at­ing mi­croor­gan­isms in dif­fuse vent­ing flu­ids from two hy­dro­thermal sys­tems. FEMS Mi­cro­biol. Ecol. 90:731-6. [ncbi page] [internal download]

Reeves, E.P., M.Y. Yoshinaga, P. Pjevac, N.I. Goldenstein, J. Peplies, A. Meyerdierks, R. Amann, W. Bach, and K.U. Hinrichs. 2014. Mi­cro­bial lip­ids re­veal car­bon as­sim­il­a­tion pat­terns on hy­dro­thermal sulf­ide chim­neys. En­viron. Mi­cro­biol. 16:3515-32. [ncbi page] [internal download]

Bizic-Ionescu, M., R. Amann, and H.-P. Grossart. 2014. Massive re­gime shifts and high activ­ity of het­ero­trophic bac­teria in an ice-covered lake. PLoS ONE. 9:e113611. [ncbi page] [download pdf]

Ruff, E.S., D. Probandt, A.-C. Zinkann, M.H. Iversen, C. Klaas, L. Würzberg, N. Krombholz, D. Wolf-Gladrow, R. Amann, and K. Knittel. 2014. In­dic­a­tions for al­gae-de­grad­ing benthic mi­cro­bial com­munit­ies in deep-sea sed­i­ments along the Ant­arc­tic Po­lar Front. Deep Sea Re­search Part II: Top­ical Stud­ies in Ocean­o­graphy. 108:6-16. [sciencedirect page] [internal download]

Yarza, P., P. Yilmaz, E. Pruesse, F.O. Glöckner, W. Ludwig, K.-H. Schleifer, W.B. Whitman, J. Euzeby, R. Amann, and R. Rossello-Mora. 2014. Unit­ing the clas­si­fic­a­tion of cul­tured and un­cul­tured bac­teria and ar­chaea us­ing 16S rRNA gene se­quences. Nat. Rev. Mi­cro­biol. 12:635-645. [ncbi page] [internal download]

Kyrpides, N.C., P. Hugenholtz, J.A. Eisen, T. Woyke, M. Göker, C.T. Parker, R. Amann, [56 authors], and H.P. Klenk. 2014. Ge­n­omic en­cyc­lo­pe­dia of Bac­teria and Ar­chaea: Se­quen­cing a myriad of type strains. PLoS Bio­logy. 12:e1001920. [ncbi page] [download pdf]

Kleindienst, S., F.-A. Herbst, M. Stagars, F. von Netzer, M. von Bergen, J. Seifert, J. Peplies, R. Amann, F. Musat, T. Lueders, and K. Knittel. 2014. Di­verse sulfate-re­du­cing bac­teria of the Desulfosarcina/Desulfococcus clade are the key al­kane de­graders at mar­ine seeps. ISME J. 8:2029-44. [ncbi page] [internal download]

Krupke, A., G. Lavik, H. Halm, B.M. Fuchs, R.I. Amann, and M.M.M. Kuypers. 2014. The as­so­ci­ation between a uni­cel­lu­lar al­gae and the N2 fix­ing cy­anobac­terium UN­CYN-A in the North At­lantic Ocean. En­viron. Mi­cro­biol. 16:3153-67. [ncbi page] [internal download]

Kabisch, A., A. Otto, S. König, D. Becher, D. Albrecht, M. Schüler, H. Teeling, R. I. Amann, and T. Schweder. 2014. Func­tional char­ac­ter­iz­a­tion of poly­sac­char­ide util­iz­a­tion loci in the mar­ine Bacteroidetes ‘Gramella for­setii’ KT0803. ISME J. 8:1492-502. [ncbi page] [internal download]

Samant, S., R.I. Amann, and D. Hahn. 2014. Eval­u­ation of the 23S rRNA gene as tar­get for qPCR based quan­ti­fic­a­tion of Frankia in soils. Sys­tem. Appl. Mi­cro­biol. 37:229-234. [ncbi page] [internal download]

 

2013

Mann, A.J., R.L. Hahnke, S. Huang, J. Werner, P. Xing, T. Barbeyron, B. Huettel, K. Stüber, R. Reinhardt, J. Harder, F.O. Glöckner, R.I. Amann, H. Teeling. 2013. The gen­ome of the alga-as­so­ci­ated mar­ine fla­vobac­terium Formosa agariphila KMM 3901T re­veals a broad po­ten­tial for de­grad­a­tion of algal poly­sac­char­ides. Appl. En­viron. Mi­cro­biol. 79:6813-6822. [ncbi page] [download pdf]

Bennke, C.M., T.R. Neu, B.M. Fuchs, and R. Amann. 2013. Map­ping gly­cocon­jug­ate-me­di­ated in­ter­ac­tions of mar­ine Bac­teroid­etes with di­at­oms. Sys­tem. Appl. Mi­cro­biol. 36:417-425. [ncbi page] [internal download]

Ruff, S.E., J. Arnds, K. Knittel, R. Amann, G. Wegener, A. Ramette, and A. Boetius. 2013. Mi­cro­bial com­munit­ies of deep-sea meth­ane seeps at Hikur­angi con­tin­ental mar­gin (New Zea­l­and). PLOS One. 8:e72627. [ncbi page] [download pdf]

Allers, E., C. Moraru, M.B. Duhaime, E. Beneze, N. Solonenko, J. Barrero Canosa, R. Amann, and M.B. Sullivan. 2013. Single-cell and pop­u­la­tion level viral in­fec­tion dy­nam­ics re­vealed by phage­FISH, a method to visu­al­ize in­tra­cel­lu­lar and free vir­uses. En­viron. Mi­cro­biol. 15:2306-2318. [ncbi page] [internal download]

Krupke, A., N. Musat, J. LaRoche, W. Mohr, B.M. Fuchs, R.I. Amann, M.M.M. Kuypers, and R.A. Foster. 2013. In situ iden­ti­fic­a­tion and N2 and C fix­a­tion of un­cul­tiv­ated cy­anobac­terial pop­u­la­tions. Sys­tem. Appl. Mi­cro­biol. 36:259-271. [ncbi page] [internal download]

Wöhlbrand, L., J.H. Jacob, M. Kube, M. Mussmann, R. Jarling, A. Beck, R. Amann, H. Wilkes, R. Reinhardt, and R. Rabus. 2013. Com­plete gen­ome, cata­bolic sub-pro­teo­mes and key-meta­bol­ites of Desulfobacula toluolica Tol2, a mar­ine, aro­matic com­pound-de­grad­ing, sulfate-re­du­cing bac­terium. En­viron. Mi­cro­biol.15:1334-1355. [ncbi page] [internal download]

van de Vossenberg, J., D. Woebken, W.J. Maalcke, H.J.C.T. Wessels, B.E. Dutilh, B. Kartal, E.M. Janssen-Megens, G. Roeselers, J. Yan, D. Speth, J. Gloerich, W. Geerts, E. van der Biezen, W. Pluk, K.-J. Francoijs, L. Russ, P. Lam, S.A. Malfatti, S.G. Tringe, S.C.M. Haaijer, H.J.M. op den Camp, H.G. Stunnenberg, R. Amann, M. Kuypers, and M.S.M. Jetten. 2013. The meta­gen­ome of the mar­ine anam­mox bac­terium Candidatus Scalindua profunda il­lus­trates the ver­sat­il­ity of this glob­ally im­port­ant ni­tro­gen cycle bac­terium. En­viron. Mi­cro­biol. 15:1275-1289. [ncbi page] [internal download]

Finster, K.W., K.U. Kjeldsen, M. Kube, R. Reinhardt, M. Mussmann, R. Amann, and L. Schreiber. 2013. Com­plete gen­ome se­quence of Desulfocapsa sulfexigens, a mar­ine deltapro­teo­bac­terium spe­cial­ized in dis­pro­por­tion­at­ing in­or­ganic sul­fur com­pounds. Stand­ards in Ge­n­omic Sci­ences. 8:58-68. [sigs page] [download pdf]

Yarza, P., C. Spröer, J. Swiderski, N. Mrotzek, S. Spring, B.J. Tindall, S. Gronow, R. Pukall, H.-P. Klenk, E. Lang, S. Verbarg, A. Crouch, T. Lilburn, B. Beck, C. Unosson, S. Cardew, E.R.B. Moore, M. Gomila, Y. Nakagawa, D. Janssens, P. De Vos, J. Peiren, T. Suttels, D. Clermont, C. Bizet, M. Sakamoto, T. Iida, T. Kudo, Y. Kosako, Y. Oshida, M. Ohkuma, D.R. Arahal, E. Spieck, A. Pommerening Roeser, M. Figge, D. Park, P. Buchanan, A. Cifuentes, R. Munoz, J.P. Euzéby, K.-H. Schleifer, W. Ludwig, R. Amann, F.O. Glöckner, and R. Rosselló-Móra. 2013. Se­quen­cing Orphan Spe­cies ini­ti­at­ive (SOS): filling the gaps in the 16S rRNA gene se­quence data­base for all spe­cies with val­idly pub­lished names. Sys­tem. Appl. Mi­cro­biol. 36:69-73. [ncbi page] [internal download]

 

2012

Thiele, S., B. Fuchs, N. Ramaiah, and R. Amann. 2012. Mi­cro­bial com­munity re­sponse dur­ing the iron fer­til­iz­a­tion ex­per­i­ment LO­HAFEX. Appl. En­viron. Mi­cro­biol. 78:8803-8812. [ncbi page] [download pdf]

Moraru, C., and R. Amann. 2012. Crys­tal ball: fluor­es­cence in situ hy­brid­iz­a­tion in the age of su­per-res­ol­u­tion mi­cro­scopy. Sys­tem. Appl. Mi­cro­biol. 35:549-552. [ncbi page] [internal download]

Alonso, C., N. Musat, B. Adam, M. Kuypers and R. Amann. 2012. HISH-SIMS ana­lysis of bac­terial up­take of algal-de­rived car­bon in the Rio de la Plata es­tu­ary. Sys­tem. Appl. Mi­cro­biol. 35:541-548. [ncbi page] [internal download]

Arnosti, C., B.M. Fuchs, R. Amann, and U. Passow. 2012. Con­trast­ing ex­tra­cel­lu­lar en­zyme activ­it­ies of particle-as­so­ci­ated bac­teria from dis­tinct provinces of the North At­lantic Ocean. Fron­ti­ers in Aquatic Mi­cro­bi­o­logy. 425:1-9. [fmicb page] [download pdf]

Lenk, S., C. Moraru, S. Hahnke, J. Arnds, M. Richter, M. Kube, R. Reinhardt, T. Brinkhoff, J. Harder, R. Amann, and M. Mußmann. 2012. Ros­eo­bac­ter clade bac­teria are abund­ant in coastal sed­i­ments and en­code a novel com­bin­a­tion of sul­fur ox­id­a­tion genes. ISME J. 6:2178-2187. [ncbi page] [internal download]

Kleindienst, S., A. Ramette, R. Amann, and K. Knittel. 2012. Dis­tri­bu­tion and in situ abund­ance of sulfate-re­du­cing bac­teria in di­verse mar­ine hy­dro­car­bon seep sed­i­ments. En­viron. Mi­cro­biol. 14:2689-2710. [ncbi page] [internal download]

Kubo, K., K.G. Lloyd, J. Biddle, R. Amann, A. Teske, and K. Knittel. 2012. Ar­chaea of the Mis­cel­laneous Cren­ar­chae­otal Group (MCG) are abund­ant, di­verse, and wide­spread in mar­ine en­vir­on­ments. ISME J. 6:1949-1965. [ncbi page] [internal download]

Pizzetti, I., S. Fazi, B.M. Fuchs, and R. Amann. 2012. High abund­ance of novel en­vir­on­mental chlamydiae in a Tyrrhe­nian coastal lake (Lago di Paola, Italy). En­viron. Mi­cro­biol. Re­ports. 4:446-452. [wiley online library] [internal download]

Bulgarelli, D., M. Rott, K. Schlaeppi, E.V.L. van Themaat, N. Ahmadinejad, F. Assenza, P. Rauf, B. Huettel, R. Reinhardt, E. Schmelzer, J. Peplies, F.O. Gloeckner, R. Amann, T. Eickhorst, and P. Schulze-Lefert. 2012. Re­veal­ing struc­ture and as­sembly cues for Ar­a­bidop­sis root-in­hab­it­ing bac­terial mi­cro­bi­ota. Nature. 488:91-95. [ncbi page] [internal download]

Sanchez-Andrea, I., K. Knittel, R. Amann, R. Amils, and J.L. Sanz. 2012. Quan­ti­fic­a­tion of Tinto River sed­i­ment mi­cro­bial com­munit­ies: im­port­ance of sulfate-re­du­cing bac­teria and their role in at­ten­u­at­ing acid mine drain­age. Appl. En­viron. Mi­cro­biol. 78:4638-4645. [ncbi page] [download pdf]

Voigt, B., C.X. Hieu, K. Hempel, D. Becher, R. Schlüter, H. Teeling, F.O. Glöckner, R. Amann, M. Hecker, and T. Schweder. 2012. Cell sur­face pro­teome of the mar­ine planc­to­my­cete Rhodopirellula baltica. Pro­teo­m­ics. 12:1781-1791. [ncbi page] [internal download]

Teeling, H., B.M. Fuchs, D. Becher, C. Klockow, A. Gardebrecht, C.M. Bennke, M. Kassabgy, S. Huang, A.J. Mann, J. Waldmann, M. Weber, A. Klindworth, A. Otto, J. Lange, J. Bernhardt, C. Reinsch, M. Hecker, J. Peplies, F.D. Bockelmann, U. Callies, G. Gerdts, A. Wichels, K.H. Wiltshire, F.O. Glöckner, T. Schweder, and R. Amann. 2012. Sub­strate-con­trolled suc­ces­sion of mar­ine bac­terioplank­ton pop­u­la­tions in­duced by a phyto­plank­ton bloom. Sci­ence 336:608-611. [ncbi page] [internal download]

Salman, V., R. Amann, D.A. Shub, and H.N. Schulz-Vogt. 2012. Mul­tiple self-spli­cing in­trons in the 16S rRNA genes of gi­ant sul­fur bac­teria. Proc. Natl. Acad. Sci. USA 109:4203-4208. [ncbi page] [download pdf]

Gómez-Pereira, P.R., M. Schüler, B.M. Fuchs, C. Bennke, H. Teeling, J. Waldmann, M. Richter, V. Barbe, E. Bataille, F.O. Glöckner, and R. Amann. 2012. Ge­n­omic con­tent of un­cul­tured Bac­teroid­etes from con­trast­ing oceanic provinces in the North At­lantic Ocean. En­viron. Mi­cro­biol. 14:52-66. [ncbi page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R., and  C. Moraru. 2012. Two dec­ades of fluor­es­cence in situ hy­brid­iz­a­tion in sys­tem­atic and ap­plied mi­cro­bi­o­logy. Syst. Appl. Mi­cro­biol. 35:483-4. [ncbi page] [internal download]

 

2011

Holler, T., F. Widdel, K. Knittel, R. Amann, M.Y. Kellermann, K.U. Hinrichs, A. Teske, A. Boetius, and G. Wegener. 2011. Ther­mo­philic an­aer­obic ox­id­a­tion of meth­ane by mar­ine mi­cro­bial con­sor­tia. ISME J. 5:1946-1956. [ncbi page] [internal download]

Schauer, R., H. Røy, N. Augustin, H.H. Gennerich, M. Peters, F. Wenzhoefer, R. Amann, and A. Meyerdierks. 2011. Bac­terial sul­fur cyc­ling shapes mi­cro­bial com­munit­ies in sur­face sed­i­ments of an ul­tramafic hy­dro­thermal vent field. En­viron. Mi­cro­biol. 13:2633-2648. [ncbi page] [internal download]

Petersen, J.M., F.U. Zielinski, T. Pape, R. Seifert, C. Moraru, R. Amann, S. Hourdez, P.R. Girguis, S.D. Wankel, V. Barbe, E. Pelletier, D. Fink, C. Borowski, W. Bach, and N. Dubilier. 2011. Hy­dro­gen is an en­ergy source for hy­dro­thermal vent sym­bi­oses. Nature. 476:176-180. [ncbi page] [internal download]

Serrano, W., R. Amann, R. Rosselló-Móra, R.A. Herbert, and U. Fischer. 2011. The genus Allochromatium (Chro­ma­tiales Chro­ma­tiaceae) re­vis­ited: A study on its in­tra­genic struc­ture based on mul­ti­locus se­quence ana­lysis (MLSA) and DNA-DNA hy­brid­iz­a­tion (DDH). Syst. Appl. Mi­cro­biol. 34: 590-594. [ncbi page] [internal download]

Pizzetti, I., B.M. Fuchs, G. Gerdts, A. Wichels, K.H. Wiltshire, and R. Amann. 2011. Tem­poral vari­ab­il­ity of coastal Planc­to­my­cetes clades at Ka­beltonne sta­tion, North Sea. Appl. En­viron. Mi­cro­biol. 77:5009-5017. [ncbi page] [download pdf]

Kubo, K., K. Knittel, R. Amann, M. Fukui, and K. Matsuura. 2011. Sul­fur-meta­bol­iz­ing bac­terial pop­u­la­tions in mi­cro­bial mats of the Na­ka­busa hot spring, Ja­pan. Syst. Appl. Mi­cro­biol. 34:293-302. [ncbi page] [internal download]

Salman, V., R. Amann, A.C. Girnth, L. Polerecky, J.V. Bailey, S. Høgslund, G. Jessen, S. Pantoja, and H.N. Schulz-Vogt. 2011. A single-cell se­quen­cing ap­proach to the clas­si­fic­a­tion of large, va­cu­olated sul­fur bac­teria. Syst. Appl. Mi­cro­biol. 34:243-259. [ncbi page] [internal download]

Suárez-Suárez, A., A. López-López, A. Tovar-Sánchez, P. Yarza, A. Orfila, J. Terrados, J. Arnds, S. Marqués, H. Niemann, P. Schmitt-Kopplin, R. Amann, and R. Rosselló-Móra. 2011. Re­sponse of sulfate-re­du­cing bac­teria to an ar­ti­fi­cial oil-spill in a coastal mar­ine sed­i­ment. En­viron. Mi­cro­biol. 13:1488-1499. [ncbi page] [internal download]

Weber, M., H. Teeling, S. Huang, J. Waldmann, M. Kassabgy, B.M. Fuchs, A. Klindworth, C. Klockow, A. Wichels, G. Gerdts, R. Amann, and F.O. Glöckner. 2011. Prac­tical ap­plic­a­tion of self-or­gan­iz­ing maps to in­ter­re­late biod­iversity and func­tional data in NGS-based meta­ge­n­om­ics. ISME J. 5:918-928. [ncbi page] [internal download]

Munoz, R., P. Yarza, W. Ludwig, J. Euzéby, R. Amann, K.H. Schleifer, F.O. Glöckner, and R. Rosselló-Móra. 2011. Re­lease LT­Ps104 of the All-Spe­cies Liv­ing Tree. Syst. Appl. Mi­cro­biol. 34:169-170. [ncbi page] [internal download]

Zeder, M., A. Ellrott, and R. Amann. 2011. Auto­mated sample area defin­i­tion for high-through­put mi­cro­scopy. Cyto­metry A. 79:306-310. [ncbi page] [internal download]

Lenk, S., J. Arnds, K. Zerjatke, N. Musat, R. Amann, and M. Mussmann. 2011. Novel groups of Gammapro­teo­bac­teria cata­lyse sul­fur ox­id­a­tion and car­bon fix­a­tion in a coastal, in­ter­tidal sed­i­ment. En­viron. Mi­cro­biol. 13:758-774. [ncbi page] [internal download]

Moraru, C., G. Moraru, B.M. Fuchs, and R. Amann. 2011. Con­cepts and soft­ware for a ra­tional design of poly­nuc­leotide probes. En­viron. Mi­cro­biol. Rep. 3:69–78. [wiley online library] [internal download]

Jogler, C., G. Wanner, S. Kolinko, M. Niebler, R. Amann, N. Petersen, M. Kube, R. Reinhardt, and D. Schüler. 2011. Con­ser­va­tion of pro­teo­bac­terial mag­neto­some genes and struc­tures in an un­cul­tiv­ated mem­ber of the deep-branch­ing Ni­tro­s­pira phylum. Proc. Natl. Acad. Sci. USA 108:1134-1139. [ncbi page] [download pdf]

Pizzetti, I., A. Gobet, B.M. Fuchs, R. Amann, and S. Fazi. 2011. Abund­ance and di­versity of Planc­to­my­cetes in a Tyrrhe­nian coastal sys­tem of cent­ral Italy. Aquat. Mi­crob. Ecol. 65:129-139. [ame page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, I. Meseguer, M. Lucio, P. Schmitt-Kopplin, J. Dopazo, R. Rossello-Mora, M. Schüler, F. O. Glöckner, R. Amann, T. Gabaldon, and J. Anton. 2011. From ge­n­om­ics to mi­cro­e­volu­tion and eco­logy: the case of Salinibacter ruber. In: Halo­philes and Hy­per­saline En­vir­on­ments, pp.. A. Vent­osa, A. Oren, Y. Ma (Eds.) Springer, Ber­lin, Ger­many.

Thiele, S., B.M. Fuchs, and R.I. Amann. 2011. Iden­ti­fic­a­tion of Mi­croor­gan­isms Us­ing the Ri­bosomal RNA Ap­proach and Fluor­es­cence In Situ Hy­brid­iz­a­tion. In: Treat­ise on Wa­ter Sci­ence, vol. 3, pp. 171–189. Peter Wil­derer (ed.) Ox­ford: Aca­demic Press. [internal download]

 

2010

Yarza, P., W. Ludwig, J. Euzeby, R. Amann, K.-H. Schleifer, F.O. Glöckner, and R. Rossello-Mora. 2010. Up­date of the all-spe­cies Liv­ing Tree Pro­ject based on 16S and 23S rRNA se­quence ana­lyses. Sys­tem. Appl. Mi­cro­biol. 33:291-299. [ncbi page] [internal download]

Alonso, C., P. Gomez-Pereira, A. Ramette, L. Ortega, B. M. Fuchs, and R. Amann. 2010. Mul­ti­level ana­lysis of the bac­terial di­versity along the en­vir­on­mental gradi­ent Rio de la Plata-South At­lantic Ocean. Aquat. Mi­crob. Ecol. 61:57-72. [ame page] [internal download]

Schreiber, L., T. Holler, K. Knittel, A. Meyerdierks, and R. Amann. 2010. Iden­ti­fic­a­tion of the dom­in­ant sulfate-re­du­cing bac­terial part­ner of an­aer­obic meth­an­o­trophs of the ANME-2 clade. En­viron. Mi­cro­biol. 12:2327-2340. [ncbi page] [internal download]

Moraru, C., P. Lam, B. Fuchs, M. Kuypers, and R. Amann. 2010. Gene­FISH – an in situ tech­nique for link­ing gene pres­ence and cell iden­tity in en­vir­on­mental mi­croor­gan­isms. En­viron. Mi­cro­biol. 12:3057-3073. [ncbi page] [internal download]

Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, P. Yarza, J. Brito-Echeverria, M. Lucio, P. Schmitt-Kopplin, I. Meseguer, C. Schenowitz, C. Dossat, V. Barbe, J. Dopazo, R. Rossello-Mora, M. Schüler, F.O. Glöckner, R. Amann, T. Galbadon, and J. Anton. 2010. Fine-scale evol­u­tion: ge­n­omic, phen­o­typic and eco­lo­gical dif­fer­en­ti­ation in two Salinibacter ruber strains sim­ul­tan­eously isol­ated from the same salt­ern. ISME J. 4:882-895. [ncbi page] [internal download]

Jogler, C., M. Niebler, W. Lin, M. Kube, G. Wanner, S. Kolinko, P. Stief, A.J. Beck, D. De Beer, N. Petersen, Y. Pan, R. Amann, R. Reinhard, and D. Schüler. 2010.Cul­tiv­a­tion-in­de­pend­ent char­ac­ter­iz­a­tion of „Candidatus Mag­neto­bac­terium bav­aricum“ via ul­tra­struc­tural, geo­chem­ical, eco­lo­gical and meta­ge­n­omic meth­ods.En­viron. Mi­cro­biol. 12:2466-2478. [ncbi page] [internal download]

Arnds, J., K. Knittel, U. Buck, M. Winkel, and R. Amann. 2010. De­vel­op­ment of a 16S rRNA-tar­geted probe set for Verrucomicrobia and its ap­plic­a­tion for fluor­es­cence in situ hy­brid­iz­a­tion in a humic lake. Sys­tem. Appl. Mi­cro­biol. 33:139-148. [ncbi page] [internal download]

Simonato, F., P.R. Gomez-Pereira, B.M. Fuchs, and R. Amann. 2010. Bac­terioplank­ton di­versity and com­munity com­pos­i­tion in the South­ern La­goon of Venice. Sys­tem. Appl. Mi­cro­biol. 33:128-138. [ncbi page] [internal download]

Serrano, W., R. Amann, R. Rossello-Mora, and U. Fischer. 2010. Eval­u­ation of the use of mul­ti­locus se­quence ana­lysis (MLSA) to re­solve taxo­nomic con­flicts with the genus Marichromatium. Sys­tem. Appl. Mi­cro­biol. 33:116-121. [ncbi page] [internal download]

Gomez-Pereira, P.R., B.M. Fuchs, C. Alonso, M.J. Oliver, J.E.E. van Beusekom, and R. Amann. 2010. Dis­tinct fla­vobac­terial com­munit­ies in con­trast­ing wa­ter masses of the North At­lantic Ocean. ISME J. 4:472-487. [ncbi page] [internal download]

Meyerdierks, A., M. Kube, I. Kostadinov, H. Teeling, F. O. Glöckner, R. Reinhardt, and R. Amann. 2010. Meta­gen­ome and mRNA ex­pres­sion ana­lyses of an­aer­obic meth­an­o­trophic ar­chaea of the ANME-1 group. En­viron. Mi­cro­biol. 12:422-439. [ncbi page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Anton, J., R. Amann, and R. Rossello-Mora. 2010. In Bergey’s Manual. Chapter 27. Fam­ily 1. Rhodo­ther­m­a­ceae. Genus II. Sa­lin­i­bac­ter, p. 146-151.

 

2009

Schattenhofer, M., B. Fuchs, R. Amann, G. Tarran, M. Zubkov, and J. Pernthaler. 2009. Lat­it­ud­inal dis­tri­bu­tion of bac­terioplank­ton pop­u­la­tions in the At­lantic Ocean. En­viron. Mi­cro­biol. 11:2078-2093. [ncbi page] [internal download]

Jogler, C., W. Lin, A. Meyerdierks, M. Kube, E. Katzmann, C. Flies, Y.X. Pan, R. Amann, R. Reinhardt, and D. Schüler. 2009. To­ward clon­ing of the mag­netotactic meta­gen­ome: iden­ti­fic­a­tion of mag­neto­some is­land gene clusters in un­cul­tiv­ated mag­netotactic bac­teria from dif­fer­ent aquatic sed­i­ments. Appl. En­viron. Mi­cro­biol. 75:3972-3979. [ncbi page] [download pdf]

Buck, U., H.-P. Grossart, R. Amann, and J. Pernthaler. 2009. Sub­strate in­cor­por­a­tion pat­terns of bac­terioplank­ton pop­u­la­tions in strat­i­fied and mixed wa­ters of a humic lake. En­viron. Mi­cro­biol. 11:1854-1865. [ncbi page] [internal download]

Lavik, G., T. Stührmann, V. Brüchert, A. van der Plas, V. Mohrholz, P. Lam, M. Mußmann, B. M. Fuchs, R. Amann, U. Lass and & M. M.M. Kuypers. 2009. De­tox­i­fic­a­tion of sulph­idic African shelf wa­ters by bloom­ing chemo­li­tho­trophs. Nature 457:581-584. [ncbi page] [internal download]

Serrano, W., R. Amann, and U. Fischer. 2009. A mod­er­ately ther­mo­philic and high sulph­ide tol­er­ant bio­type of Mari­chro­ma­tium gra­cile, isol­ated from tidal sed­i­ments of the Ger­man Wad­den Sea: Marichromatium gracile bio­type thermosulphidiphilum. Sys­tem. Appl. Mi­cro­biol. 32:1-7. [ncbi page] [internal download]

Yan, S., B. M. Fuchs, S. Lenk, J. Harder, J. Wulf, N.-Z. Jiao, and R. Amann. 2009. Biogeo­graphy and phylo­geny of the NOR5/​OM60 clade of Gammaproteobacteria. Sys­tem. Appl. Mi­cro­biol. 32:124-139. [ncbi page] [internal download]

Strittmatter, A.W., H. Liesegang, R. Rabus, I. Decker, J. Amann, S. Andres, A. Henne, W.F. Fricke, R. Martinez-Arias, D. Bartels, A. Goesmann, L. Krause, A. Pühler, H.-P. Klenk, M. Richter, M. Schüler, F.O. Glöckner, A. Meyerdierks, G. Gottschalk, and R. Amann. 2009. Gen­ome se­quence of Desulfobacterium autotrophicum HRM2, a mar­ine sulfate re­du­cer ox­id­iz­ing or­ganic car­bon com­pletely to car­bon di­ox­ide. En­viron. Mi­cro­biol. 11:1038-1055. [ncbi page] [internal download]

Lam, P., G. Lavik, M.M. Jensen, J. van de Vossenberg, M. Schmid, D. Woebken, D. Guiterrez, R. Amann, M.S.M. Jetten, and M.M.M. Kuypers. 2009. Re­vis­ing the ni­tro­gen cycle in the Per­uvian oxy­gen min­imum zone. Proc. Natl. Acad. Sci. USA 106:4752-4747. [ncbi page] [download pdf]

 

2008

Amann, R., and B. Fuchs. 2008. Single-cell iden­ti­fic­a­tion in mi­cro­bial com­munit­ies by im­proved fluor­es­cence in situ hy­brid­iz­a­tion tech­niques. Nature Rev. Mi­cro­biol. 6:339-348. [ncbi page] [internal download]

Hieu, C. X., B. Vogt, D. Albrecht, D. Becher, T. Lombardot, F. O. Glöckner, R. Amann, M. Hecker, and T. Schweder. 2008. De­tailed pro­teome ana­lysis of grow­ing cells of the planc­to­my­cete Rhodopirellula balt­ica SH1T. Pro­teo­m­ics 8:1608-1623. [ncbi page] [internal download]

Woebken, D., P. Lam, M.M.M. Kuypers, S.W.A. Naqvi, B. Kartal, M. Strous, M.S.M. Jetten, B.M. Fuchs, and R. Amann. 2008. A mi­cro­di­versity study of anam­mox bac­teria re­veals a novel Can­did­atus Scalindua phylo­type in mar­ine oxy­gen min­imum zones. En­viron. Mi­cro­biol. 10:3106-3119. [ncbi page] [internal download]

Yarza, P., M. Richter, J. Peplies, J. Euzeby, R. Amann, K.-H. Schleifer, W. Ludwig, F. O. Glöckner, R. Rossello-Mora. 2008. The all-spe­cies liv­ing tree pro­ject: A 16S rRNA-based phylo­gen­etic tree of all se­quenced type strains. Sys­tem. Appl. Mi­cro­biol. 31:241-250. [ncbi page] [internal download]

Barberyon, T., F. Carpentier, S. L’Haridon, M. Schüler, G. Michel, and R. Amann. 2008. De­scrip­tion of Maribac­ter for­setii sp. nov., a mar­ine Fla­vobac­teri­aceae isol­ated from North Sea wa­ter, and emen­ded de­scrip­tion of the genus Maribac­ter. Int. J. Sys­tem. Evol. Mi­cro­biol. 58:790-797. [ncbi page] [internal download]

Musat, N., H. Halm, B. Winterholler, P. Hoppe, S. Peduzzi, F. Hillon, F. Horreard, R. Amann, B.B. Jorgensen, and M.M.M. Kuypers. 2008.A single-cell view on the eco­physiology of an­aer­obic pho­to­trophic bac­teria. Proc. Natl. Acad. Sci. USA 105:17861-17866. [ncbi page] [download pdf]

 

2007

Wakeham, S. G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jorgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damste, H. M. Talbot, and D. Woebken. 2007. Mi­cro­bial eco­logy of the strat­i­fied wa­ter column of the Black Sea as re­vealed by a com­pre­hens­ive bio­marker study. Or­ganic Geo­chem­istry. 38:2070-2097. [sciencedirect page] [internal download]

Prast, M., A. Bischoff, U. Waller, R. Amann, und U.-G. Berninger. 2007. Im­pact of cili­ates on ni­tri­fic­a­tion and ni­tri­fy­ing bac­teria in Baltic Sea sed­i­ments. Mar­ine Ecol. Pro­gress Ser. 350:55-61. [meps page] [internal download]

Mussmann, M., F. Z. Hu, M. Richter, D. de Beer, A. Preisler, B. B. Jorgensen, M. Huntemann, F. O. Glöckner, R. Amann, W. J. H. Koopman, R. S. Lasken, B. Janto, J. Hogg, P. Stoodley, R. Boissy, and G. D. Ehrlich. 2007. In­sights into the gen­omes of large sul­fur bac­teria re­vealed by ana­lysis of single fil­a­ments. PLoS Bio­logy 5:1923-1937 (e230). [ncbi page] [download pdf]

Woebken, D., H. Teeling, P. Wecker, A. Dumitriu, I. Kostadinov, E. F. DeLong, R. Amann, and F. O. Glöckner. 2007. Fos­mids of novel mar­ine planc­to­my­cetes from the Nam­i­bian and Ore­gon coast up­welling sys­tems and their cross-com­par­ison with planc­to­my­cete gen­omes. ISME J. 1:419-435. [ncbi page] [internal download]

Woebken, D., B. M. Fuchs, M. M. M. Kuypers, and R. Amann. 2007. Po­ten­tial in­ter­ac­tions of particle-as­so­ci­ated anam­mox bac­teria with bac­terial and ar­chaeal part­ners in the Nam­i­bian up­welling sys­tem. Appl. En­viron. Mi­cro­biol. 73:4648-4657. [ncbi page] [download pdf]

Lösekann, T., K. Knittel, T. Nadalig, B. Fuchs, H. Niemann, A. Boetius, and R. Amann. 2007. Di­versity and abund­ance of an­er­obic and an­aer­obic meth­ane ox­id­izers at the Haakon Mosby mud vol­cano, Bar­ents Sea. Appl. En­viron. Mi­cro­biol. 73:3348-3362. [ncbi page] [download pdf]

Santos, F., A. Meyerdierks, A. Pena, R. Rossello-Mora, R. Amann, and P. Anton. 2007. Meta­ge­n­omic ap­proach to the study of halo­phages: the en­vir­on­mental halo­phage 1 (EHP-1). En­viron. Mi­cro­biol. 9:1711-1723. [ncbi page] [internal download]

Soria-Carrasco, V., M. Valens-Vadell, A. Pena, J. Anton, R. Amann, J. Castresana, and R. Rossello-Mora. 2007. Phylo­gen­etic po­s­i­tion of Salinibacter ruber based on con­cat­en­ated pro­tein align­ments. Syst. Appl. Mi­cro­biol. 30:171-179. [ncbi page] [internal download]

Fuchs, B. M., S. Spring, H. Teeling, C. Quast, J. Wulf, M. Schattenhofer, S. Yan, S. Ferriera, J. Johnson, F. O. Glöckner, and R. Amann. 2007. Char­ac­ter­iz­a­tion of a mar­ine gammapro­teo­bac­terium cap­able of aer­obic an­oxy­genic pho­to­syn­thesis. Proc. Natl. Acad. Sci. USA 104:2891-2896. [ncbi page] [download pdf]

Alonso, C., F. Warnecke, R. Amann, and J. Pernthaler. 2007. High local and global di­versity of Fla­vobac­teria in mar­ine plank­ton. En­viron. Mi­cro­biol. 9:1253-1266. [ncbi page] [internal download]

Musat, N., O. Giere, F. Thiermann, R. Amann, and N. Dubilier. 2007 Mo­lecu­lar and mor­pho­lo­gical char­ac­ter­iz­a­tion of the sym­bi­osis between bac­terial en­dosym­bionts and the nem­at­ode Astomonema sp. from the Ba­hamas. En­viron. Mi­cro­biol. 9:1345-1353. [ncbi page] [internal download]

Lam, P., M.M. Jensen, G. Lavik, D.F. McGinnis, B. Müller, C.J. Schubert, R. Amann, B. Thamdrup, and M.M.M. Kuypers. 2007. Link­ing cren­ar­chaeal and bac­terial ni­tri­fic­a­tion to ANAM­MOX in the Black Sea. Proc. Natl. Acad. Sci. USA 104:7104-7109. [ncbi page] [download pdf]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Fuchs, B. M., J. Pernthaler, and R. Amann. 2007. Single cell iden­ti­fic­a­tion by fluor­es­cence in situ hy­brid­iz­a­tion, pp. 886-896. In: Meth­ods for Gen­eral and Mo­lecu­lar Mi­cro­bi­o­logy, 3rd Edi­tion. C.A. Reddy, T. J. Beveridge, J.A. Breznak, G. Mar­zluf, T. M. Schmidt, and L. R. Snyder, Eds. ASM Press, Wash­ing­ton D.C. [internal download]

 

2006

Musat, N., U. Werner, K. Knittel, S. Kolb, T. Dodenhof, J. E. E. van Beusekom, D. De Beer, N. Dubilier, and R. Amann. 2006. Mi­cro­bial com­munity struc­ture of sandy in­ter­tidal sed­i­ments in the North Sea, Sylt-Romo Basin, Wad­den Sea. Syst. Appl. Mi­cro­biol. 29:333-348. [ncbi page] [internal download]

MacGregor, B. J., H.T.S. Boschker, and R. Amann. 2006. Com­par­ison of rRNA and po­lar-lipid-de­rived fatty acid bio­mark­ers for as­sess­ing 13C-sub­strate in­cor­por­a­tion by mi­croor­gan­isms in mar­ine sed­i­ments. Appl. En­viron. Mi­cro­biol. 72:5246-5253. [ncbi page] [download pdf]

Blazejak, A., J. Kuever, C. Erseus, R. Amann, and N. Dubilier. 2006. Phylo­geny of 16S rRNA, ribu­lose 1,5-bi­sphos­phate carboxylase/​oxy­genase, and ad­en­osine 5’-phos­pho­sulfate re­ductase genes from gamma- and al­phapro­teo­bac­terial sym­bionts in gut­less mar­ine worms (Oli­go­chaeta) from Ber­muda and the Ba­hamas. Appl. En­viron. Mi­cro­biol. 72:5527-5536. [ncbi page] [download pdf]

MacGregor, B. J., and R. Amann. 2006. Single-stran­ded con­form­a­tional poly­morph­ism for sep­ar­a­tion of mixed rRNAs (rRNA-SSCP), a new method for pro­fil­ing mi­cro­bial com­munit­ies. Syst. Appl. Mi­cro­biol. 29:661-670. [ncbi page] [internal download]

Niemann, H., T. Lösekann, D. de Beer, M. Elvert, T. Nadalig, K. Knittel, R. Amann, E.J. Sauter, M. Schlüter, M. Klages, J. Foucher, and A. Boetius. 2006. Novel mi­cro­bial com­munit­ies of the Haakon Mosby mud vul­cano and their role as a meth­ane sink. Nature (Lon­don) 443:854-858. [ncbi page] [internal download]

Woyke, T., H. Teeling, N.N. Ivanova, M. Huntemann, M. Richter, F.O. Glöckner, D. Boffelli, I.J. Anderson, K.W. Barry, H.J. Shapiro, E. Szeto, N.C. Kyrpides, M. Mussmann, R. Amann, C. Bergin, C. Ruehland, E.M. Rubin, and N. Dubilier. 2006. Sym­bi­osis in­sights through meta­ge­n­omic ana­lysis of a mi­cro­bial con­sor­tium. Nature (Lon­don) 443:950-956. [ncbi page] [internal download]

Bauer, M., M. Kube, H. Teeling, M. Richter, T. Lombardot, E. Allers, C.A. Würdemann, C. Quast, H. Kuhl, F. Knaust, D. Woebken, K. Bischof, M. Mussmann, J.V. Choudhuri, F. Meyer, R. Reinhardt, R.I. Amann, and F.O. Glöckner. 2006. Whole gen­ome ana­lysis of the mar­ine Bacteroidetes “Gramella forsetii” re­veals ad­apt­a­tions to de­grad­a­tion of poly­meric or­ganic mat­ter. En­viron. Mi­cro­biol. 8:2201-2213. [ncbi page] [internal download]

Mary, I., J.L. Heywood, B.M. Fuchs, R. Amann, G.A. Tarran, P.H. Burkill, and M.V. Zubkov. 2006. SAR11 dom­in­ance among meta­bol­ic­ally act­ive low nuc­leic acid bac­terioplank­ton in sur­face wa­ters along an At­lantic me­ri­di­onal tran­sect. Aquat. Mi­crob. Ecol. 45:107-113. [ame page] [internal download]

Tujula, N. A., C. Holmström, M. Mußmann, R. Amann, S. Kjelleberg, and G. R. Crocetti. 2006. A CARD-FISH pro­tocol for the iden­ti­fic­a­tion and enu­mer­a­tion of epi­phytic bac­teria on mar­ine al­gae. J. Mi­cro­biol. Meth. 65:604-607. [ncbi page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R., J. Peplies, and D. Schüler. 2006. Di­versity and tax­onomy of mag­netotactic bac­teria. In: Mag­netore­cep­tion and Mag­neto­somes in Bac­teria, pp. 25-36. D. Schüler (Ed.). Springer-Ver­lag Ber­lin Heidel­berg. [internal download]

Cypionka, H., H.-D. Babenzien, F. O. Glöckner, and R. Amann. 2006. The genus Nevskia. In: The Proka­ryotes. Third Edi­tion. Volume 6: Pro­teo­bac­teria: Gamma Sub­class, pp. 1152-1155. M. Dwor­kin, S. Falkow, E. Rosen­berg, K. H. Schleifer and E. Stack­ebrandt (Eds.). Springer Sci­ences+Busi­ness Me­dia, LLC. [internal download]

 

2005

Knittel, K., T. Lösekann, A. Boetius, R. Kort, and R. Amann. 2005. Di­versity and dis­tri­bu­tion of meth­an­o­trophic ar­chaea at cold seeps. Appl. En­viron. Mi­cro­biol. 71:467-479. [ncbi page] [download pdf]

Kämpfer, P., R. Schulze, U. Jäckel, K. A. Malik, R. Amann, and S. Spring. 2005. Hydrogenophaga defluvii sp. nov. and Hydrogenophaga atypica sp. nov., isol­ated from ac­tiv­ated sludge. Int. J. Syst. Evol. Mi­cro­biol. 55:341-344. [ijsem page] [internal download]

Blazejak, A., C. Erseus, R. Amann, and N. Dubilier. 2005. Co­ex­ist­ence of bac­terial sulf­ide ox­id­izers, sulfate re­du­cers, and spir­o­chetes in a gut­less worm (Oli­go­chaeta) from the Peru Mar­gin. Appl. En­viron. Mi­cro­biol. 71:1553-1561. [ncbi page] [download pdf]

Knittel, K., J. Kuever, A. Meyerdierks, R. Meinke, R. Amann, and T. Brinkhoff. 2005. Thiomicrospira arctica sp. nov. and Thiomicrospira psychrophila sp. nov., psychro­philic, ob­lig­ately chemo­lithoauto­trophic, sul­fur-ox­id­iz­ing bac­teria isol­ated from mar­ine Arc­tic sed­i­ments. Int. J. Syst. Evol. Mi­cro­biol. 55:781-786. [ijsem page] [internal download]

Mussmann, M., K. Ishii, R. Rabus, and R. Amann. 2005. Di­versity and ver­tical dis­tri­bu­tion of cul­tured and un­cul­tured Deltaproteobacteria in an in­ter­tidal mud flat of the Wad­den Sea. En­viron. Mi­cro­biol. 7:405-418. [ncbi page] [internal download]

Lombardot, T., M. Bauer, H. Teeling, R. Amann, and F.-O. Glöckner. 2005. The tran­scrip­tional reg­u­lator pool of the mar­ine bac­terium Rhodopirellula sp. strain SH 1T as re­vealed by whole gen­ome com­par­is­ons. FEMS Mi­cro­biol. Lett. 242:137-145. [ncbi page] [internal download]

Duperon, S., T. Nadalig, J.-C. Caprais, M. Sibuet, A. Fiala-Medioni, R. Amann, and N. Dubilier. 2005. Dual sym­bi­osis in a Bathymodiolus mus­sel from a meth­ane seep on the Ga­bon con­tin­ental mar­gin (South­east At­lantic): 16S rRNA phylo­geny and dis­tri­bu­tion of the sym­bionts in gills. Appl. En­viron. Mi­cro­biol. 71:1694-1700. [ncbi page] [download pdf]

Kuypers, M.M.M., G. Lavik, D. Woebken, M. Schmid, B. M. Fuchs, R. Amann, B. B. Jorgensen, and M. S. M. Jetten. 2005. Massive ni­tro­gen loss from the Benguela up­welling sys­tem through an­aer­obic am­monium ox­id­a­tion. Proc. Natl. Acad. Sci. USA 102:6478-6483. [ncbi page] [download pdf]

Kumar, Y., R. Westram, S. Behrens, B. Fuchs, F. O. Glöckner, R. Amann, H. Meier, and W. Ludwig. 2005. Graph­ical rep­res­ent­a­tion of ri­bosomal RNA probe ac­cess­ib­il­ity data us­ing ARB soft­ware pack­age. BMC Bioin­form­at­ics 6:61 (doi:10.1186/​1471-2105-6-61). [ncbi page] [download pdf]

Fuchs, B. M., D. Wöbken, M. V. Zubkov, P. Burkill, and R. Amann. 2005. Mo­lecu­lar iden­ti­fic­a­tion of pi­co­plank­ton pop­u­la­tions in con­trast­ing wa­ters of the Ar­a­bian Sea. Aquatic Mi­crob. Ecol. 39:145-157. [ame page] [internal download]

Kube, M., A. Beck, A. Meyerdierks, R. Amann, R. Reinhardt, and R. Rabus. 2005. A cata­bolic gene cluster for an­aer­obic ben­zoate de­grad­a­tion in meth­an­o­trophic mi­cro­bial Black Sea mats. Syst. Appl. Mi­cro­biol. 28:287-294. [ncbi page] [internal download]

Pena, A., M. Valens, F. Santos, S. Buczolits, J. Anton, P. Kämpfer, H.-J. Busse, R. Amann, and R. Rossello-Mora. 2005. In­traspe­cific com­par­at­ive ana­lysis of the spe­cies Salinibacter ruber. Ex­tremo­philes 9:151-161. [ncbi page] [internal download]

Gieseke, A., J.L. Nielsen, R. Amann, P.H. Nielsen, and D. DeBeer. 2005. In situ sub­strate con­ver­sion and as­sim­il­a­tion by ni­tri­fy­ing bac­teria in a model biofilm. En­viron. Mi­cro­biol. 7:1392-1404. [ncbi page] [internal download]

Pernthaler, J., and R. Amann. 2005. Fate of het­ero­trophic mi­crobes in pela­gic hab­it­ats: fo­cus on pop­u­la­tions. Mi­cro­biol. Mol. Biol. Rev. 69:440-461. [ncbi page] [download pdf]

Gade, D., D. Theiss, D. Lange, E. Mirgorodskaya, T. Lombardot, F. O. Glöckner, M. Kube, R. Reinhardt, R. Amann, H. Lehrach, R. Rabus, and J. Gobom. 2005. To­wards the pro­teome of the mar­ine bac­terium Rhodopirellula baltica: map­ping the sol­uble pro­teins. Pro­teo­m­ics 5:3654-3671. [ncbi page] [internal download]

Mußmann, M., M. Richter, T. Lombardot, A. Meyerdierks, J. Kuever, M. Kube, F. O. Glöckner, and R. Amann. 2005. Clustered genes re­lated to sulfate res­pir­a­tion in un­cul­tured proka­ryotes sup­port the the­ory of their con­com­it­ant ho­ri­zontal trans­fer. J. Bac­teriol. 187:7126–7137. [ncbi page] [download pdf]

Meyerdierks, A., M. Kube, T. Lombardot, K. Knittel, M. Bauer, F. O. Glöckner, R. Reinhardt, and R. Amann. 2005. In­sights into the gen­omes of ar­chaea me­di­at­ing the an­aer­obic ox­id­a­tion of meth­ane. En­viron. Mi­cro­biol. 7:1937-1951. [ncbi page] [internal download]

Beardsley, C., K. Knittel, R. Amann, and J. Pernthaler. 2005. Quan­ti­fic­a­tion and dis­tinc­tion of aplas­tidic and plas­tidic mar­ine nano­plank­ton by fluor­es­cence in situ hy­brid­iz­a­tion. Aquat. Mi­crob. Ecol. 41:163-169. [ame page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Anton, J., A. Pena, M. Valens, F. Santos, F. O. Glöckner, M. Bauer, J. Dopazo, J. Herrero, R. Rossello-Mora, and R. Amann. 2005. Salinibacter ruber: ge­n­om­ics and biogeo­graphy. In: Ad­apt­a­tions to Life at High Salt Con­cen­tra­tions, p. 257-266. N. Gunde-Ci­mer­man, A. Oren, A. Ple­men­itas (Eds.). Kluwer Aca­demic Pub­lish­ers BV, Dordrecht. [internal download]

2004

Gade, D., H. Schlesner, F. O. Glöckner, R. Amann, S. Pfeiffer, and M. Thomm. 2004. Iden­ti­fic­a­tion of Planc­to­my­cetes with or­der-, genus- and strain-spe­cific 16S rRNA-tar­geted probes. Mi­crob. Ecol. 47:243-251. [ncbi page] [internal download]

Warnecke, F., R. Amann, and J. Pernthaler. 2004. Ac­tin­obac­terial 16S rRNA genes from fresh­wa­ter hab­it­ats cluster in four dis­tinct lin­ages. En­viron. Mi­cro­biol. 6:242-253. [ncbi page] [internal download]

Zubkov, M., L. J. Linn, R. Amann, and R. P. Kiene. 2004. Tem­poral pat­terns of bio­lo­gical di­methyl­sulf­ide (DMS) con­sump­tion dur­ing labor­at­ory-in­duced phyto­plank­ton bloom cycles. Mar. Ecol. Prog. Ser. 271:77-86. [meps page] [internal download]

Peplies, J., S. C. K. Lau, J. Pernthaler, R. Amann, and F. O. Glöckner. 2004. Ap­plic­a­tion and val­id­a­tion of DNA mi­croar­rays for the 16S rRNA-based ana­lysis of mar­ine bac­terioplank­ton. En­viron. Mi­cro­biol. 6:638-645. [ncbi page] [internal download]

Heuchert, A., F. O. Glöckner, R. Amann, and U. Fischer. 2004. Psychrobacter nivimaris sp. nov., a het­ero­trophic bac­terium at­tached to or­ganic particles isol­ated from the South At­lantic (Ant­arc­tica). Syst. Appl. Mi­cro­biol. 27:399-406. [ncbi page] [internal download]

Altmann, D., P. Stief, R. Amann, and D. De Beer. 2004. Dis­tri­bu­tion and activ­ity of ni­tri­fy­ing bac­teria in nat­ural stream sed­i­ment versus labor­at­ory sed­i­ment mi­cro­cosms. Aquat. Mi­crob. Ecol. 36:73-81. [ame page] [internal download]

Altmann, D., P. Stief, R. Amann, and D. de Beer. 2004. Ni­tri­fic­a­tion in fresh­wa­ter sed­i­ments as in­flu­enced by in­sect lar­vae:quan­ti­fic­a­tion by mi­cro­sensors and fluor­es­cence in situ hy­brid­iz­a­tion. Mi­crob. Ecol. 48:145-153. [ncbi page] [internal download]

Brinkmeyer, R., F.-O. Glöckner, E. Helmke, and R. Amann. 2004. Pre­dom­in­ance of beta­pro­teo­bac­teria in sum­mer melt pools on Arc­tic pack ice. Lim­nol. Ocean­ogr. 49:1013-1021. [lo page] [download pdf]

Rabus, R., A. Ruepp, T. Frickey, T. Rattei, B. Fartmann, M. Stark, M. Bauer, A. Zibat, T. Lombardot, I. Becker, J. Amann, K. Gellner, H. Teeling, W. D. Leuschner, F.-O, Glöckner, A. N. Lupas, R. Amann, and H.-P. Klenk. 2004. The gen­ome of a sulph­ateredu­cing bac­terium from per­man­ently cold Arc­tic sed­i­ments: Desulfotalea psychrophila. En­viron. Mi­cro­biol. 6:887-902. [ncbi page] [internal download]

Teeling, H., A. Meyerdierks, M. Bauer, R. Amann, and F. O. Glöckner. 2004. Ap­plic­a­tion of tetra­nuc­leotide fre­quen­cies for the as­sign­ment of ge­n­omic frag­ments. En­viron. Mi­cro­biol. 6:938-947. [ncbi page] [internal download]

Pernthaler, A., and R. Amann. 2004. Sim­ul­tan­eous fluor­es­cence in situ hy­brid­iz­a­tion of mRNA and rRNA in en­vir­on­mental bac­teria. Appl. En­viron. Mi­cro­biol. 70:5426-5433. [ncbi page] [download pdf]

Behrens, S., B. M. Fuchs, and R. Amann. 2004. The ef­fect of nuc­le­o­base-spe­cific fluor­es­cence quench­ing on in situ hy­brid­iz­a­tion with rRNA-tar­geted oli­go­nuc­leotide probes. Syst. Appl. Mi­cro­biol. 27:565-572. [ncbi page] [internal download]

Peplies, J., F. O. Glöckner, R. Amann, and W. Ludwig. 2004. Com­par­at­ive se­quence ana­lysis and oli­go­nuc­leotide probe design based on 23S rRNA genes of Alphaproteobacteria from North Sea bac­terioplank­ton. Syst. Appl. Mi­cro­biol. 27:573-580. [ncbi page] [internal download]

Sekar, R., B. M. Fuchs, R. Amann, and J. Pernthaler. 2004. Flow sort­ing of mar­ine bac­terioplank­ton after fluor­es­cence in situ hy­brid­iz­a­tion. Appl. En­viron. Mi­cro­biol. 70:6210-6219. [ncbi page] [download pdf]

Ishii, K., M. Mussmann, B. J. MacGregor, and R. Amann. 2004. An im­proved fluor­es­cence in situ hy­brid­iz­a­tion pro­tocol for the iden­ti­fic­a­tion of bac­teria and ar­chaea in mar­ine sed­i­ments. FEMS Mi­cro­biol. Ecol. 50:203-212. [ncbi page] [internal download]

Bauer, M., T. Lombardot, H. Teeling, N. L. Ward, R. I. Amann, and F. O. Glöckner. 2004. Ar­chaea-like genes for C1-trans­fer en­zymes in Planc­to­my­cetes: phylo­gen­etic im­plic­a­tions of their un­ex­pec­ted pres­ence in this phylum. J. Mol. Evol. 59:571-586. [ncbi page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R., R. Rossello-Mora, C. Flies, and D. Schüler. 2004. Phylo­geny and in situ iden­ti­fic­a­tion of mag­netotactic bac­teria, p. 45-60. In: Bio­m­in­er­al­isa­tion (2. Edi­tion), E. Bäuer­lein (Ed.), Wiley-VCH, Wein­heim, Ger­many. [internal download]

Pernthaler, A., J. Pernthaler, and R. Amann. 2004. Sens­it­ive multi-color in situ hy­brid­iz­a­tion for the iden­ti­fic­a­tion of en­vir­on­mental mi­croor­gan­isms. In: Mo­lecu­lar Mi­cro­bial Eco­logy Manual, Second Edi­tion, 3.11, pp. 711-726. Kowal­chuk, G. et al. (Eds.). Kluwer Aca­demic Pub­lish­ers, Dordrecht, The Neth­er­lands. [internal download]

Oren, A., F. Rodriguez-Valera, J. Anton, S. Benlloch, R. Rossello-Mora, R. Amann, J. Coleman, and N. J. Russell. 2004. Red, ex­tremely halo­philic, but not ar­chaeal: the physiology and eco­logy of Salinibacter ruber, a bac­terium isol­ated from salt­ern crys­tal­lizer ponds. In: Halo­philic mi­croor­gan­isms, pp. 63-76. A. Vent­osa. (Ed.). Springer-Ver­lag, Ber­lin Heidel­berg. [internal download]

 

2003

Zubkov, M. V., B. M. Fuchs, G. A. Tarran, P. H. Burkill, and R. Amann. 2003. High rate of up­take of or­ganic ni­tro­gen com­pounds by Prochlorococcus cy­anobac­teria as a key to their dom­in­ance in oli­go­trophic oceanic wa­ters. Appl. En­viron. Mi­cro­biol. 69:1299-1304. [ncbi page] [download pdf]

Gieseke, A., L. Bjerrum, M. Wagner, and R. Amann. 2003. Struc­ture and activ­ity of mul­tiple ni­tri­fy­ing bac­terial pop­u­la­tions co-ex­ist­ing in a biofilm. En­viron. Mi­cro­biol. 5:355-369. [ncbi page] [internal download]

Behrens, S., C. Rühland, J. Inacio, H. Huber, A. Fonseca, I. Spencer-Martins, B. M. Fuchs, and R. Amann. 2003. In situ ac­cess­ib­il­ity of small-sub­unit rRNA of mem­bers of the do­mains Bacteria, Archaea, and Eucarya to Cy3-labeled oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 69:1748-1758. [ncbi page] [download pdf]

Peplies, J., F. O. Glöckner, and R. Amann. 2003. Op­tim­iz­a­tion strategies for the DNA mi­croar­ray-based de­tec­tion of bac­teria with 16S rRNA-tar­get­ing oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 69:1397-1407. [ncbi page] [download pdf]

Mußmann, M., H. N. Schulz, B. Strotmann, T. Kjaer, L. P. Nielsen, R. A. Rossello-Mora, R. I. Amann, and Bo B. Jorgensen. 2003. Phylo­geny and dis­tri­bu­tion of ni­trate-stor­ing Beggiatoa spp. in coastal mar­ine sed­i­ments. En­viron. Mi­cro­biol. 5:523-533. [ncbi page] [internal download]

Beardsley, C., J. Pernthaler, W. Wosniok, and R. Amann. 2003. Are read­ily cul­tur­able bac­teria in coastal North Sea wa­teres sup­pressed by se­lect­ive graz­ing mor­tal­ity? Appl. En­viron. Mi­cro­biol. 69:2624-2630. [ncbi page] [download pdf]

Pernthaler, J., A. Pernthaler, and R. Amann. 2003. Auto­mated enu­mer­a­tion of groups of mar­ine pi­co­plank­ton after fluor­es­cence in situ hy­brid­iz­a­tion. Appl. En­viron. Mi­cro­biol. 69:2631-2637. [ncbi page] [download pdf]

Inacio, J., S. Behrens, B. M. Fuchs, A. Fonseca, I. Spencer-Martins, and R. Amann. 2003. In situ ac­cess­ib­il­ity of Saccharomyces cerevisiae 26S rRNA to Cy3-labeled oli­go­nuc­leotide probes com­pris­ing the D1 and D2 do­mains. Appl. En­viron. Mi­cro­biol. 69:2899-2905. [ncbi page] [download pdf]

Sekar, R., A. Pernthaler, J. Pernthaler, F. Warnecke, T. Posch, und R. Amann. 2003. An im­proved pro­tocol for quan­ti­fic­a­tion of fresh­wa­ter Actinobacteria by fluor­es­cence in situ hy­brid­iz­a­tion. Appl. En­viron. Mi­cro­biol. 69:2928-2935. [ncbi page] [download pdf]

Glöckner, F.O., M. Kube, M. Bauer, H. Teeling, T. Lombardot, W. Ludwig, D. Gade, A. Beck, K. Borzym, K. Heitmann, R. Rabus, H. Schlesner, R. Amann, and R. Reinhardt. 2003. Com­plete gen­ome se­quence of the mar­ine planc­to­my­cete Pirellula sp. strain 1. Proc. Natl. Acad. Sci. USA 100:8298-8303. [ncbi page] [download pdf]

Neretin, L. N., A. Schippers, A. Pernthaler, K. Hamann, R. Amann, and B. B. Jorgensen. 2003. Quan­ti­fic­a­tion of dis­sim­il­at­ory (bi)sulph­ite re­ductase gene ex­pres­sion in Desulfobacterium autotrophicum us­ing real-time RT-PCR. En­viron. Mi­cro­biol. 5:660-671. [ncbi page] [internal download]

Gonzalez-Toril, E., E. Llobet-Brossa, E. O. Casamayor, R. Amann, and R. Amils. 2003. Mi­cro­bial eco­logy of an ex­treme acidic en­vir­on­ment, the Tinto river. Appl. En­viron. Mi­cro­biol. 69:4853-4865. [ncbi page] [download pdf]

Behrens, S., B. M. Fuchs, F. Müller, and R. Amann. 2003. Is the in situ ac­cess­ib­il­ity of the 16S rRNA of Escherichia coli for Cy3-labeled oli­go­nuc­leotide probes pre­dicted by a threed­i­men­sional struc­ture model of the 30S ri­bosomal sub­unit? Appl. En­viron. Mi­cro­biol. 69:4935-4941. [ncbi page] [download pdf]

Knittel, K., A. Boetius, A. Lemke, H. Eilers, K. Lochte, O. Pfannkuche, P. Linke, and R. Amann. 2003. Activ­ity, dis­tri­bu­tion, and di­versity of sulfate re­du­cers and other bac­teria in sed­i­ments above gas hy­drate (Cas­ca­dia Mar­gin, Ore­gon). Geo­mic­ro­biol. J. 20:269-294. [tandfonline page] [internal download]

Brinkmeyer, R., K. Knittel, J. Jürgens, H. Weyland, R. Amann, and E. Helmke. 2003. Di­versity and struc­ture of bac­terial com­munit­ies in Arc­tic versus Ant­arc­tic Pack Ice. Appl. En­viron. Mi­cro­biol. 69:6610-6619. [ncbi page] [download pdf]

Altmann, D., P. Stief, R. Amann, D. de Beer, and A. Schramm. 2003. In situ dis­tri­bu­tion and activ­ity of ni­tri­fy­ing bac­teria in fresh­wa­ter sed­i­ment. En­viron. Mi­cro­biol. 5:798-803. [ncbi page] [internal download]

Krüger, M., A. Meyerdierks, F. O. Glöckner, R. Amann, F. Widdel, M. Kube, R. Reinhardt, J. Kahnt, R. Böcher, R. K. Thauer, and S. Shima. 2003. A con­spicu­ous nickel pro­tein in mi­cro­bial mats that ox­id­ize meth­ane an­aer­obic­ally. Nature (Lon­don) 426:878-881. [ncbi page] [internal download]

 

2002

Gieseke, A., P. Arnz, R. Amann, and A. Schramm. 2002. Sim­ul­tan­eous P and N re­moval in a se­quen­cing batch biofilm re­actor: in­sights from re­actor and mi­cro­scale in­vest­ig­a­tions. Wat. Res. 36:501-509. [ncbi page] [internal download]

Pernthaler, A., C. M. Preston, J. Pernthaler, E. F. DeLong, and R. Amann. 2002. Com­par­ison of fluor­es­cently labeled oli­go­nuc­leotide and poly­nuc­leotide probes for the de­tec­tion of pela­gic mar­ine bac­teria and ar­chaea. Appl. En­viron. Mi­cro­biol. 68:661-667. [ncbi page] [download pdf]

Anton, J., A. Oren, S. Benlloch, F. Rodriguez-Valera, R. Amann, and R. Rossello-Mora. 2002. Salinibacter ruber gen. nov., sp. nov., a novel, ex­tremely halo­philic mem­ber of the Bacteria from salt­ern crys­tal­lizer ponds. Int. J. Syst. Evol. Mi­cro­biol. 52:485-491. [ncbi page] [internal download]

Casamayor, E. O., C. Pedros-Alio, G. Muyzer, and R. Amann. 2002. Mi­cro­het­ero­gen­eity in 16S ri­bosomal DNA-defined bac­terial pop­u­la­tions from a strat­i­fied plank­tonic en­vir­on­ment is re­lated to tem­poral changes and to eco­lo­gical ad­apt­a­tions. Appl. En­viron. Mi­cro­biol. 68:1706-1714. [ncbi page] [download pdf]

Zubkov, M. V., B. M. Fuchs, S. D. Archer, R. P. Kiene, R. Amann, and P. H. Burkill. 2002. Rapid turnover of dis­solved DMS and DMSP by defined bac­terioplank­ton com­munit­ies in the strat­i­fied eu­photic zone of the North Sea. Deep-Sea Re­search II. 49:3017-3038. [sciencedirect page] [internal download]

Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluor­es­cence in situ hy­brid­iz­a­tion and cata­lyzed re­porter de­pos­ition for the iden­ti­fic­a­tion of mar­ine bac­teria. Appl. En­viron. Mi­cro­biol. 68:3094-3101. [ncbi page] [download pdf]

R. Rabus, D. Gade, R. Helbig, M. Bauer, F. O. Glöckner, M. Kube, H. Schlesner, R. Reinhardt, and R. Amann. 2002. Ana­lysis of N-acet­yl­gluc­osa­m­ine meta­bol­ism in the mar­ine bac­terium Pirellula sp. strain 1 by a pro­teo­mic ap­proach. Pro­teo­m­ics 2:649-655. [ncbi page] [internal download]

Abed, R. M. M., W. Schönhuber, R. Amann, and F. Garcia-Pichel. 2002. Pi­cobenthic cy­anobac­terial pop­u­la­tions re­vealed by 16S rRNA-tar­geted in situ hy­brid­iz­a­tion. En­viron. Mi­cro­biol. 4:375-382. [ncbi page] [internal download]

Michaelis, W., R. Seifert, K. Nauhaus, T. Treude, V. Thiel, M. Blumenberg, K. Knittel, A. Gieseke, K. Peterknecht, T. Pape, A. Boetius, R. Amann, B. B. Joergensen, F. Widdel, J. Peckmann, N. V. Pimenov, and M. B. Gulin. 2002. Mi­cro­bial reefs in the Black Sea fuelled by an­aer­obic ox­id­a­tion of meth­ane. Sci­ence 297:1013-1015. [ncbi page] [internal download]

MacGregor, B. J., V. Brüchert, S. Fleischer, and R. Amann. 2002. Isol­a­tion of small­sub­unit rRNA for stable iso­topic char­ac­ter­iz­a­tion. En­viron. Mi­cro­biol. 4:451-464. [ncbi page] [internal download]

Llobet-Brossa, E., R. Rabus, M. E. Böttcher, M. Könneke, N. Finke, A. Schramm, R. L. Meyer, S. Grötzschel, R. Rossello-Mora, and R. Amann. 2002. Com­munity struc­ture and activ­ity of sulfate-re­du­cing bac­teria in an in­ter­tidal sur­face-sed­i­ment: a multi-meth­ods ap­proach. Aquatic Mi­crob. Ecol. 29:211-226. [ame page] [internal download]

Zubkov, M. V., B. M. Fuchs, G. A. Tarran, P. H. Burkill, and R. Amann. 2002. Meso­scale dis­tri­bu­tion of dom­in­ant bac­terioplank­ton groups in the north­ern North Sea in early sum­mer. Aquat. Mi­crob. Ecol. 29:135-144. [ame page] [internal download]

Pernthaler, A., J. Pernthaler, M. Schattenhofer, and R. Amann. 2002. Iden­ti­fic­a­tion of DNA-syn­thes­iz­ing bac­terial cells in coastal North Sea plank­ton. Appl. En­viron. Mi­cro­biol. 68:5728-5736. [ncbi page] [download pdf]

Borowski, C., O. Giere, J. Krieger, R. Amann, und N. Dubilier. 2002. New as­pects of the sym­bi­osis in the pro­van­nid snail Ifremeria nautilei from the North Fiji Back Arc Basin. Cah. Biol. Mar. 43:321-324. [cbm page] [download pdf]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Knittel, K., T. Losekann, A. Boetius, T. Nadalig, and R. Amann. 2002. Di­versity of mi­croor­gan­isms me­di­at­ing an­aer­obic ox­id­a­tion of meth­ane. In: Geochim­ica Et Cosmochim­ica Acta. 66(15A):A407.

Amann, R. 2002.Think big: the in­ter­na­tional di­men­sion of en­vir­on­mental mi­cro­bi­o­logy. En­viron. Mi­cro­biol. 4:3. [ncbi page]

Amann, R. 2002. Moleku­lare Pop­u­la­tion­san­a­lyse von Mik­roor­gan­is­men. Rundge­spräche der Kom­mis­sion für Öko­lo­gie, Bd. 23 “Bedeu­tung der Mik­roor­gan­is­men für die Um­welt”, P. 31-40, Ver­lag Dr. Friedrich Pfeil, München. [internal download]

MacGregor, B. J., K. Ravenschlag, and R. Amann. 2002. Nuc­leic acid-based tech­niques for ana­lyz­ing the di­versity, struc­utre, and func­tion of mi­cro­bial com­munit­ies in mar­ine wa­ters and sed­i­ments. In: Mi­cro­bial sys­tems in sed­i­ment­ary en­vir­on­ments of con­tin­ental mar­gins, pp. 419-438. G. We­fer et al. Eds. Springer-Ver­lag, Ber­lin. [internal download]

Boetius, A., B. B. Jorgensen, R. Amann, J. P. Henriet, K. U. Hinrichs, K. Lochte, B. J. MacGregor, G. Voordouw. 2002. Mi­cro­bial sys­tems in sed­i­ment­ary en­vir­on­ments of con­tin­ental mar­gins. In: Mi­cro­bial sys­tems in sed­i­ment­ary en­vir­on­ments of con­tin­ental mar­gins, pp. 479-495. G. We­fer et al. Eds. Springer-Ver­lag, Ber­lin. [internal download]

 

2001

Ravenschlag, K., K. Sahm, and R. Amann. 2001. Quant­it­at­ive mo­lecu­lar ana­lysis of the mi­cro­bial com­munity in mar­ine Arc­tic sed­i­ments. Appl. En­viron. Mi­cro­biol. 67:387-395. [ncbi page] [download pdf]

Schweitzer, B., I. Huber, R. Amann, W. Ludwig, and M. Simon. 2001. Al­pha- and beta­pro­teo­bac­teria con­trol the con­sump­tion and re­lease of amino acids on lake snow ag­greg­ates. Appl. En­viron. Mi­cro­biol. 67:632-637. [ncbi page] [download pdf]

Fuchs, B. M., K. Syutsubo, W. Ludwig, and R. Amann. 2001. In situ ac­cess­ib­il­ity of Escherichia coli 23S rRNA to fluor­es­cently labeled oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 67:961-968. [ncbi page] [download pdf]

Rossello-Mora, R., and R. Amann. 2001. The spe­cies concept for proka­ryotes. FEMS Mi­cro­biol. Rev. 25:39-67. [ncbi page] [internal download]

Gieseke, A., U. Purkhold, M. Wagner, R. Amann, and A. Schramm. 2001. Com­munity struc­ture and activ­ity dy­nam­ics of ni­tri­fy­ing bac­teria in a phos­phate-re­mov­ing biofilm. Appl. En­viron. Mi­cro­biol. 67:1351-1362. [ncbi page] [download pdf]

Nogales, B., E. R. B. Moore, E. Llobet-Brossa, R. Rossello-Mora, R. Amann, and K. N. Timmis. 2001. Com­bined use of 16S ri­bosomal DNA and 16S rRNA to study the bac­terial com­munity of poly­chlor­in­ated bi­phenyl-pol­luted soil. Appl. En­viron. Mi­cro­biol. 67:1874-1884. [ncbi page] [download pdf]

Pernthaler, J., T. Posch, K. Simek, J. Vrba, A. Pernthaler, F. O. Glöckner, U. Nübel, R. Psenner, and R. Amann. 2001. Pred­ator-spe­cific en­rich­ment of Ac­tin­obac­teria from a cos­mo­pol­itan fresh­wa­ter clade in mixed con­tinu­ous cul­ture. Appl. En­viron. Mi­cro­biol. 67:2145-2155. [ncbi page] [download pdf]

Dubilier, N., C. Mülders, T. Ferdelman, D. De Beer, A. Pernthaler, M. Klein, M. Wagner, C. Erseus, F. Thiermann, J. Krieger, O. Giere, and R. Amann. 2001. En­dosym­bi­otic sulphat-re­du­cing and sulph­ide-ox­id­iz­ing bac­teria in an oli­go­chaete worm. Nature (Lon­don) 411:298-302. [ncbi page] [internal download]

Simek, K., J. Pernthaler, M. G. Weinbauer, K. Hornak, J. R. Dolan, J. Nedoma, M. Masin, and R. Amann. 2001. Changes in bac­terial com­munity com­pos­i­tion and dy­nam­ics and viral mor­tal­ity rates as­so­ci­ated with en­hanced fla­gel­late graz­ing in a me­s­oeutrophic reser­voir. Appl. En­viron. Mi­cro­biol. 67:2723-2733. [ncbi page] [download pdf]

Amann, R., B. M. Fuchs, and S. Behrens. 2001. The iden­ti­fic­a­tion of mi­croor­gan­isms by fluor­es­cence in situ hy­brid­isa­tion. Curr. Opin. Bi­otech. 12:231-236. [ncbi page] [internal download]

Zubkov, M. V., B. M. Fuchs, S. D. Archer, R. P. Kiene, R. Amann, and P. H. Burkill. 2001. Link­ing the com­pos­i­tion of bac­terioplank­ton to rapid turnover of dis­solved di­methyl­sulph­o­niop­ro­pi­on­ate in an algal bloom in the North Sea. En­viron. Mi­cro­biol. 3:304-311. [ncbi page] [internal download]

West, N. J., W. A. Schönhuber, N. J. Fuller, R. I. Amann, R. Rippka, A. F. Post, and D. J. Scanlan. 2001.Closely re­lated Prochlorococcus gen­o­types show re­mark­ably dif­fer­ent depth dis­tri­bu­tions in two oceanic re­gions as re­vealed by in situ hy­brid­isa­tion us­ing 16S rRNAtar­geted oli­go­nuc­leotides. Mi­cro­biol. 147:1731-1744. [ncbi page] [internal download]

Pernthaler A., J. Pernthaler, H. Eilers, and R. Amann. 2001. Growth pat­terns of two mar­ine isol­ates: ad­apt­a­tions to sub­strate patchi­ness? Appl. En­viron. Mi­cro­biol. 67:4077-4083. [ncbi page] [download pdf]

Schönhuber, W., G. Le Bourhis, J. Tremblay, R. Amann, and S. Kulakauskas. 2001. Util­iz­a­tion of tm RNA se­quences for bac­terial iden­ti­fic­a­tion. BMC Mi­cro­bi­o­logy 1:20. [ncbi page] [download pdf]

Eilers, H., J. Pernthaler, J. Peplies, F. O. Glöckner, G. Gerdts, and R. Amann. 2001. Isol­a­tion of novel pela­gic bac­teria from the Ger­man Bight and their sea­sonal con­tri­bu­tions to sur­face pi­co­plank­ton. Appl. En­viron. Mi­cro­biol. 67:5134-5142. [ncbi page] [download pdf]

Zubkov, M. V., B. M. Fuchs, P. H. Burkill, and R. Amann. 2001. Com­par­ison of cel­lu­lar and bio­mass spe­cific activ­it­ies of dom­in­ant bac­terioplank­ton groups in strat­i­fied wa­ters of the Celtic Sea. Appl. En­viron. Mi­cro­biol. 67:5210-5218. [ncbi page] [download pdf]

Kirchman, D. L., L. Yu, B. M. Fuchs, and R. Amann. 2001. Struc­ture of bac­terial com­munit­ies in aquatic sys­tems as re­vealed by fil­ter PCR. Aquat. Mi­crob. Ecol. 26:13-22. [ame page] [internal download]

Pernthaler, J., F. O. Glöckner, W. Schönhuber, and R. Amann. 2001. Fluor­es­cence in situ hy­brid­iz­a­tion with rRNA-tar­geted oli­go­nuc­leotide probes, p. 207-226. In: Meth­ods in Mi­cro­bi­o­logy (Vol. 30): Mar­ine Mi­cro­bi­o­logy, J. Paul (Ed.) Aca­demic Press, San Diego, USA. [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R, and R. Rossello-Mora. 2001. Mik­robi­o­lo­gis­che As­pekte der Biod­iversität, p. 161-180. In: Biod­iversität: Wis­senschaft­liche Grundla­gen und gesell­schaft­liche Rel­ev­anz, P. Janich, M. Gut­mann und K. Prieß (Ed.). Springer-Ver­lag, Ber­lin, Ger­many. [internal download]

Amann, R., and K. H. Schleifer. 2001. Nuc­leic acid probes and their ap­plic­a­tion in en­vir­on­mental mi­cro­bi­o­logy, p. 67-82. In: Bergey’s Manual of Sys­tem­atic Bac­teri­ology, 2. Edi­tion, Vol. 1, D. R. Boone and R. W. Casten­holz (eds.), Springer-Ver­lag, New York, USA. [internal download]

 

2000

Böttcher, M. E., B. Hespenheide, E. Llobet-Brossa, C. Beardsley, O. Larsen, A. Schramm, A. Wieland, G. Böttcher, U.-G. Berninger, and R. Amann. 2000. The biogeo­chem­istry, stable iso­tope geo­chem­istry, and mi­cro­bial com­munity struc­ture of a tem­per­ate in­ter­tidal mud­flat: An in­teg­rated study. Cont. Shelf Res. 20:1749-1769. [sciencedirect page] [internal download]

Amann, R. 2000. Who is out there? Mi­cro­bial as­pects of biod­iversity. Syst. Appl. Mi­cro­biol. 23:1-8. [ncbi page] [internal download]

Groben, R., G. J. Doucette, M. Kopp, M. Kodama, R. Amann, and L. K. Medlin. 2000. 16S rRNA tar­geted probes for the iden­ti­fic­a­tion of bac­terial strains isol­ated from cul­tures of the toxic dino­fla­gel­late Alexandrium tamarense. Mi­cro­biol. Ecol. 39:186-196. [ncbi page] [internal download]

Weller, R., F. O. Glöckner, and R. Amann. 2000. 16S rRNA-tar­geted oli­go­nuc­leotide probes for the in situ de­tec­tion of mem­bers of the phylum Cytophaga-Flavobacterium-Bacteroides. Syst. Appl. Mi­cro­biol. 23:107-114. [ncbi page] [internal download]

Fuchs, B. M., M. V. Zubkov, K. Sahm, P. H. Burkill and R. Amann. 2000. Changes in com­munity com­pos­i­tion dur­ing di­lu­tion cul­tures of mar­ine bac­terioplank­ton as as­sessed by flow cyto­met­ric and mo­lecu­lar bio­lo­gical tech­niques. En­viron. Mi­cro­biol. 2:191-201. [ncbi page] [internal download]

Oerther, D. B., J. Pernthaler, A. Schramm, R. Amann, and L. Raskin. 2000. Mon­it­or­ing pre­cursor 16S rRNAs of Acinetobacter spp. in ac­tiv­ated sludge wastewa­ter treat­ment sys­tems. Appl. En­viron. Mi­cro­biol. 66:2154-2165. [ncbi page] [download pdf]

Thamdrup, B., R. Rossello-Mora, and R. Amann. 2000. Mi­cro­bial man­ganese and sulfate re­duc­tion in Black Sea shelf sed­i­ments. Appl. En­viron. Mi­cro­biol. 66:2888-2897. [ncbi page] [download pdf]

Eilers, H., J. Pernthaler, F. O. Glöckner, and R. Amann. 2000. Cul­tur­ab­il­ity and in situ abund­ance of pela­gic bac­teria from the North Sea. Appl. En­viron. Mi­cro­biol. 66:3044-3051. [ncbi page] [download pdf]

Anton, J., R. Rossello-Mora, F. Rodriguez-Valera, and R. Amann. 2000. Ex­tremely halo­philic Bacteria in crys­tal­lizer ponds from solar salt­erns. Appl. En­viron. Mi­cro­biol. 66:3052-3057. [ncbi page] [download pdf]

Ravenschlag, K., K. Sahm, C. Knoblauch, B. B. Jorgensen, and R. Amann. 2000. Com­munity struc­ture, cel­lu­lar rRNA con­tent, and activ­ity of sulfate-re­du­cing bac­teria in mar­ine Arc­tic sed­i­ments. Appl. En­viron. Mi­cro­biol. 66:3592-3602. [ncbi page] [download pdf]

Fuchs, B. M., F. O. Glöckner, and R. Amann. 2000. Un­labeled helper oli­go­nuc­leotides in­crease the in situ ac­cess­ib­il­ity of 16S rRNA for fluor­es­cently labeled oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 66:3603-3607. [ncbi page] [download pdf]

Amann, R., and W. Ludwig. 2000. Ri­bosomal RNA-tar­geted nuc­leic acid probes for stud­ies in mi­cro­bial eco­logy. FEMS Mi­cro­biol. Rev. 24:555-565. [ncbi page] [internal download]

Boetius, A., K. Ravenschlag, C. J. Schubert, D. Rickert, F. Widdel, A. Gieseke, R. Amann, B.B. Jorgensen, U. Witte, O. Pfannkuche. 2000. Mi­cro­scopic iden­ti­fic­a­tion of a mi­cro­bial con­sor­tium ap­par­ently me­di­at­ing an­aer­obic meth­ane ox­id­a­tion above mar­ine gas hy­drates. Nature (Lon­don) 407:623-626. [ncbi page] [internal download]

H. Eilers, J. Pernthaler, and R. Amann. 2000. Suc­ces­sion of pela­gic mar­ine bac­teria dur­ing en­rich­ment: a close look at cul­tiv­a­tion-in­duced shifts. Appl. En­viron. Mi­cro­biol. 66:4634-4640. [ncbi page] [download pdf]

Glöckner, F. O., E. Zaichikov, N. Belkova, L. Denissova, J. Pernthaler, A. Pernthaler, and R. Amann. 2000. Com­par­at­ive 16S rRNA ana­lysis of lake bac­terioplank­ton re­veals glob­ally dis­trib­uted phylo­gen­etic clusters in­clud­ing an abund­ant group of ac­tin­obac­teria. Appl. En­viron. Mi­cro­biol. 66:5053-5065. [ncbi page] [download pdf]

Jurgens, G., F. O. Glöckner, R. Amann, A. Saano, L. Montonen, M. Likolammi, and U. Münster. 2000. Iden­ti­fic­a­tion of novel Ar­chaea in bac­terioplank­ton of a boreal forest lake by phylo­gen­etic ana­lysis and fluor­es­cent in situ hy­brid­iz­a­tion. FEMS Mi­cro­biol. Ecol. 34:45-56. [ncbi page] [internal download]

Schramm, A., D. DeBeer, A. Gieseke, and R. Amann. 2000. Mi­croen­vir­on­ments and dis­tri­bu­tion of ni­tri­fy­ing bac­teria in a mem­brane-bound biofilm. En­viron. Mi­cro­biol. 2:680-686. [ncbi page] [internal download]

Amann, G., K. O. Stetter, E. Llobet-Brossa, R. Amann, and J. Anton. 2000. Dir­ect proof for the pres­ence and ex­pres­sion of two 5% dif­fer­ent 16S rRNA genes in in­di­vidual cells of Haloarcula marismortui. Ex­tremo­philes 4:373-376. [ncbi page] [internal download]

Ravelhofer-Rotheneder, K., H. Engelhardt, O. Wolf, R. Amann, W. Breuer, und J. Kösters. 2000. Tax­onomis­che Klas­si­fiz­ier­ung von „Mega­bak­ter­ien“-Isol­aten aus Wel­lensit­tichen (Melopsittacus undulatus Shaw, 1805). Tier­ärztl. Prax. 28(K):415-420.

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R.. 2000. Meth­oden zur Bestim­mung der in situ-Funk­tion von Mik­roor­gan­is­men. BIOspek­trum 6:274-276. [biospektrum page] [download pdf]

Amann, R.. 2000. Meth­od­o­lo­gical As­pects of fluor­es­cence in situ hy­brid­iz­a­tion. Bios­cience Mi­cro­flora 19:85-91. [bm page] [download pdf]

Brand, B. C., R. I. Amann, M. Steinert, D. Grimm, and J. Hacker. 2000. Iden­ti­fic­a­tion and in situ de­tec­tion of in­tra­cel­lu­lar bac­teria in the en­vir­on­ment, p. 601-624. In: Sub­cel­lu­lar Bio­chem­istry, Volume 33: Bac­terial in­va­sion into eu­k­a­ryotic cells, T. A. Oelsch­lae­ger and J. Hacker (Eds.). Kluwer Aca­demic/​Plenum Pub­lish­ers, New York, USA. [ncbi page] [internal download]

Amann, R., R. Rossello-Mora, and D. Schüler. 2000. Phylo­geny and in situ iden­ti­fic­a­tion of mag­netotactic bac­teria, p. 47-60. In: Bio­m­in­er­al­isa­tion, E. Bäuer­lein (Ed.), Wiley-VCH, Wein­heim, Ger­many. [internal download]

 

1999

Jürgens, K., J. Pernthaler, S. Schalla, and R. Amann. 1999. Mor­pho­lo­gical and com­pos­i­tional changes in a plank­tonic bac­terial com­munity in re­sponse to en­hanced pro­to­zoan graz­ing. Appl. En­viron. Mi­cro­biol. 65:1241-1250. [ncbi page] [download pdf]

Schönhuber, W., B. Zarda, S. Eix, R. Rippka, M. Herdman, W. Ludwig, and R. Amann. 1999. In situ iden­ti­fic­a­tion of cy­anobac­teria with horseradish per­ox­i­dase-labeled, rRNA-tar­geted oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 65:1259-1267. [ncbi page] [download pdf]

Juretschko, S., W. Schönhuber, S. Kulakauskas, D. S. Ehrlich, K.-H. Schleifer, and R. Amann. 1999. In situ de­tec­tion of Escherichia coli cells con­tain­ing ColE1-re­lated plas­mids by hy­brid­iz­a­tion to reg­u­lat­ory RNA II. Syst. Appl. Mi­cro­biol. 22:1-8. [ncbi page] [internal download]

Glöckner, F. O., H.-D. Babenzien, J. Wulf, and R. Amann. 1999. Phylo­geny and di­versity of Achromatium oxaliferum. Sys­tem. Appl. Mi­cro­biol. 22:28-38. [ncbi page] [internal download]

Snaidr, J., B. M. Fuchs, G. Wallner, M. Wagner, K. H. Schleifer, and R. Amann. 1999. Phylo­geny and in situ iden­ti­fic­a­tion of a mor­pho­lo­gic­ally con­spicu­ous bac­terium, Candidatus Magnos­pira bakii, present in very low fre­quency in ac­tiv­ated sludge. En­viron. Mi­cro­biol. 1:125-136. [ncbi page] [internal download]

Rabus, R., H. Wilkes, A. Schramm, G. Harms, A. Behrends, R. Amann, and F. Widdel. 1999. An­aer­obic util­iz­a­tion of al­kyl­ben­zenes and n-al­kanes from crude oil in an en­rich­ment cul­ture of de­ni­tri­fy­ing bac­teria af­fil­i­at­ing with the beta-sub­class of Proteobacteria. En­viron. Mi­cro­biol. 1:145-158. [ncbi page] [internal download]

Dubilier, N., R. Amann, C. Erseus, G. Muyzer, S. Y. Park, O. Giere, and C. M. Cavanaugh. 1999. Phylo­gen­etic di­versity of bac­terial en­dosym­bionts in the gut­less mar­ine oli­go­chete Olavius loisae (An­nel­ida) Mar. Ecol. Prog. Ser. 178:271-280. [meps page] [internal download]

Meier, H., R. Amann, W. Ludwig, and K. H. Schleifer. 1999. Spe­cific oli­go­nuc­leotide probes for the in situ de­tec­tion of a ma­jor group of Gram-pos­it­ive bac­teria with low DNA G+C con­tent. Syst. Appl. Mi­cro­biol. 22:186-196. [ncbi page] [internal download]

Schulze, R., S. Spring, R. Amann, I. Huber, W. Ludwig, K.-H. Schleifer, and P. Kämpfer. 1999. Gen­o­typic di­versity of Acidovorax strains isol­ated from ac­tiv­ated sludge and de­scrip­tion of Acidovorax defluvii sp. nov. Syst. Appl. Mi­cro­biol. 22:205-214. [ncbi page] [internal download]

Rossello-Mora, R., B. Thamdrup, H. Schäfer, R. Weller, and R. Amann. 1999. The re­ponse of the mi­cro­bial com­munity of mar­ine sed­i­ments to or­ganic car­bon in­put un­der an­aer­obic con­di­tions. Syst. Appl. Mi­cro­biol. 22:237-248. [ncbi page] [internal download]

Zubkov, M. V., B.M. Fuchs, H. Eilers, P. H. Burkill, and R. Amann. 1999. De­term­in­a­tion of total pro­tein con­tent of bac­terial cells us­ing SYPRO stain­ing and flow cyto­metry. Appl. En­viron. Mi­cro­biol. 65:3251-3257. [ncbi page] [download pdf]

Simon, M., F. O. Glöckner, and R. Amann. 1999. Dif­fer­ent com­munity struc­ture and tem­per­at­ure op­tima of het­ero­trophic pi­co­plank­ton in vari­ous re­gions of the South­ern Ocean. Aquatic Mi­crob. Ecol. 18:275-284. [ame page] [internal download]

Glöckner, F. O., B. M. Fuchs, and R. Amann. 1999. Bac­terioplank­ton com­pos­i­tions of lakes and oceans: a first com­par­ison based on fluor­es­cence in situ hy­brid­iz­a­tion. Appl. En­viron. Mi­cro­biol. 65:3721-3726. [ncbi page] [download pdf]

Schramm, A., D. De Beer, J. C van den Heuvel, S. Ottengraf, and R. Amann. 1999. Mi­cro­scale dis­tri­bu­tion of pop­u­la­tions and activ­it­ies of Nitrosospira and Nitrospira spp. along a mac­ro­scale gradi­ent in a ni­tri­fy­ing biore­actor: quan­ti­fic­a­tion by in situ hy­brid­iz­a­tion and the use of mi­cro­sensors. Appl. En­viron. Mi­cro­biol. 65:3690-3696. [ncbi page] [download pdf]

Sahm, K., C. Knoblauch, and R. Amann. 1999. Phylo­gen­etic af­fil­i­ation and quan­ti­fic­a­tion of psychro­philic sulfate-re­du­cing isol­ates in mar­ine arc­tic sed­i­ments Appl. En­viron. Mi­cro­biol. 65:3976-3981. [ncbi page] [download pdf]

Ravenschlag, K., K. Sahm, J. Pernthaler, and R. Amann. 1999. High bac­terial di­versity in per­man­ently cold mar­ine sed­i­ments. Appl. En­viron. Mi­cro­biol. 65:3882-3989. [ncbi page] [download pdf]

Schramm, A., C. M. Santegoeds, H. K. Nielsen, H. Ploug, M. Wagner, M. Pribyl, J. Wanner, R. Amann, and D. De Beer. 1999. On the oc­cur­rence of an­oxic mi­croniches, de­ni­tri­fic­a­tion, and sulfate re­duc­tion in aer­ated ac­tiv­ated sludge. Appl. En­viron. Mi­cro­biol. 65:4189-4196. [ncbi page] [download pdf]

Anton, J., E. Llobet-Brossa, F. Rodriguez-Valera, and R. Amann. 1999. Fluor­es­cence in situ hy­brid­iz­a­tion ana­lysis of the proka­ryotic com­munity in­hab­it­ing crys­tal­lizer ponds. En­viron. Mi­cro­biol. 1:517-523. [ncbi page] [internal download]

Daims, H., A. Brühl, R. Amann, K.-H. Schleifer, and M. Wagner. 1999. The do­main­spe­cific probe EU­B338 is in­suf­fi­cient for the de­tec­tion of all Bac­teria: De­vel­op­ment and eval­u­ation of a more com­pre­hens­ive probe set. Syst. Appl. Mi­cro­biol. 22:434-444. [ncbi page] [internal download]

Berchtold, M., A. Chatzinotas, W. Schönhuber, A. Brune, R. Amann, D. Hahn, and H. König. 1999. Dif­fer­en­tial enu­mer­a­tion and in situ loc­al­iz­a­tion of mi­croor­gan­isms in the hindgut of the lower termite Mastotermes darwiniensis by hy­brid­iz­a­tion with rRNA-tar­geted probes. Arch. Mi­cro­biol. 172:407-416. [ncbi page] [internal download]

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Schramm, A., and R. Amann. 1999. Nuc­leic acid-based tech­niques for ana­lyz­ing the di­versity, struc­ture, and dy­nam­ics of mi­cro­bial com­munit­ies in wastewa­ter treat­ment, p. 85-108. In: Bi­o­tech­no­logy: a multi volume com­pre­hens­ive treat­ise, H.-J. Rehm, G. Reed, A. Pühler, and P.I.W. Stadler (eds.), Vol. 11a, En­vir­on­mental Pro­cesses I, J. Winter (ed.), Wiley-VCH Ver­lag GmbH, Wein­heim, Ger­many. [internal download]

Amann, R.. 1999. FISHen im Un­sicht­baren. Chemie heute. Aus­gabe 1999/​2000, p.118-123. [internal download]

1998

Ludwig, W., R. Amann, E. Martinez-Romero, W. Schönhuber, S. Bauer, A. Neef, and K.-H. Schleifer. 1998. rRNA based iden­ti­fic­a­tion and de­tec­tion sys­tems for rhizo­bia and other bac­teria. Plant and Soil 204:1-19. [springerlink page] [internal download]

Spring, S., U. Lins, R. Amann, K.-H. Schleifer, L. C. S. Ferreira, D. M. S. Esquivel, and M. Farina. 1998. Phylo­gen­etic af­fil­i­ation and ul­tra­struc­ture of un­cul­tured mag­netic bac­teria with un­usual large mag­neto­somes. Arch. Mi­cro­biol. 169:136-147. [ncbi page] [internal download]

Stoffels, M., R. Amann, W. Ludwig, D. Hekmat, and K.-H. Schleifer. 1998. Bac­terial com­munity dy­nam­ics dur­ing start-up of a trickle-bed biore­actor de­grad­ing aro­matic com­pounds. Appl. En­viron. Mi­cro­biol. 64:930-939. [ncbi page] [download pdf]

Amann, R., H. Lemmer, and M. Wagner. 1998. Mon­it­or­ing the com­munity struc­ture of wastewa­ter treat­ment plants: a com­par­ison of old and new tech­niques. FEMS Mi­cro­biol. Ecol. 25:205-215. [sciencedirect page] [internal download]

Glöckner, F.O., H. D. Babenzien, and R. Amann. 1998. Phylo­geny and iden­ti­fic­a­tion in situ of Nevskia ramosa. Appl. En­viron. Mi­cro­biol. 64:1895-1901. [ncbi page] [download pdf]

Hekmat, D., R. Amann, A. Linn, M. Stephan, M. Stoffels, and D. Vortmeyer. 1998. Biofilm pop­u­la­tion dy­nam­ics in a trickle-bed biore­actor. Wat. Sci. Tech­nol. 37(4-5):167-170. [wst page] [internal download]

Schramm, A., D. De Beer, H. van den Heuvel, S. Ottengraf, and R. Amann. 1998. In situ Struc­ture/​Func­tion stud­ies in wastewa­ter treat­ment sys­tems. Wat. Sci. Tech­nol. 37(4-5):413-416. [wst page] [internal download]

Llobet-Brossa, E., R. Rossello-Mora, and R. Amann. 1998. Mi­cro­bial com­munity com­pos­i­tion of Wad­den Sea sed­i­ments as re­vealed by fluor­es­cence in situ hy­brid­iz­a­tion. Appl. En­viron. Mi­cro­biol. 64:2691-2696. [ncbi page] [download pdf]

Amann, R., and M. Kühl. 1998. In situ meth­ods for as­sess­ment of mi­croor­gan­isms and their activ­it­ies. Curr. Opin. Mi­cro­biol. 1:352-358. [ncbi page] [internal download]

Hahn, D., A. Hess, R. Amann, and J. Zeyer. 1998. In situ iden­ti­fic­a­tion of bac­terial pop­u­la­tions in ter­restrial hab­it­ats without cul­tiv­a­tion. Col­lana Am­bi­ente 20:41-65. [internal download]

Schramm, A., D. De Beer, M. Wagner, and R. Amann. 1998. Iden­ti­fic­a­tion and activ­it­ies in situ of Nitrosospira and Nitrospira spp. as dom­in­ant pop­u­la­tions in a ni­tri­fy­ing flu­id­ized bed re­actor. Appl. En­viron. Mi­cro­biol. 64:3480-3485. [ncbi page] [download pdf]

Pernthaler, J., F.-O. Glöckner, S. Unterholzner, A. Alfreider, R. Psenner and R. Amann. 1998. Sea­sonal com­munity and pop­u­la­tion dy­nam­ics of pela­gic bac­teria and ar­chaea in a high moun­tain lake. Appl. En­viron. Mi­cro­biol. 64:4299-4306. [ncbi page] [download pdf]

Frahm, E., I. Heiber, S. Hoffmann, C. Koob, H. Meier, W. Ludwig, R. Amann, K. H. Schleifer, and U. Obst. 1998. Ap­plic­a­tion of 23S rDNA-tar­geted oli­go­nuc­leotide probes spe­cific for en­tero­cocci to wa­ter hy­giene con­trol. Sys­tem. Appl. Mi­cro­biol. 21:450-453. [ncbi page] [internal download]

Neef, A., R. Amann, H. Schlesner, and K. H. Schleifer. 1998. Mon­it­or­ing a wide­spread bac­terial group: in situ de­tec­tion of planc­to­my­cetes with 16S rRNA-tar­geted probes. Mi­cro­bi­o­logy 144:3257-3266. [ncbi page] [internal download]

Fuchs, B., G. Wallner, W. Beisker, I. Schwippel, W. Ludwig, and R. Amann. 1998. Flow cyto­met­ric ana­lysis of in situ ac­cess­ib­il­ity of Escherichia coli 16S rRNA for fluor­es­cently labeled oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 64:4973-4982. [ncbi page] [download pdf]

Chatzinotas, A., R. A. Sandaa, W. Schönhuber, R. Amann, F. L. Daae, V. Torsvik, J. Zeyer, and D. Hahn. 1998. Ana­lysis of broad-scale dif­fer­ences in mi­cro­bial com­munity com­pos­i­tion of two pristine forest soils. Syst. Appl. Mi­cro­biol. 21:579-587. [ncbi page] [internal download]

Michel, R., K.-D. Müller, R. Amann, and E. N. Schmid. 1998. Legionella-like slender rods mul­tiply­ing within a strain of Acanthamoeba sp. isol­ated from drink­ing wa­ter. Para­sitol. Res. 60:84-88. [ncbi page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R., and H. Lemmer. 1998. Grundla­gen der in situ-Ana­lyse von Struk­tur und Dy­namik kom­plexer mik­robi­eller Lebens­ge­meinsch­aften mit rRNS-Sonden und ihre Bedeu­tung für die wasser­wirtschaft­liche Praxis. Münch­ner Beiträge zur Ab­wasser-, Fisc­herei- und Fluß­bio­lo­gie 52:11-24. [internal download]

Lemmer, H., A. Zaglauer, A. Neef, and R. Amann. 1998. In situ-Nach­weis der dom­in­aten De­ni­tri­fik­anten­pop­u­la­tion zur bio­lo­gisch be­grün­deten Be­trieb­sop­ti­mier­ung der meth­an­ol­gestützten De­ni­tri­fika­tion in einem Sand­fil­ter. Münch­ner Beiträge zur Ab­wasser-, Fisc­herei- und Fluß­bio­lo­gie 52:43-60. [internal download]

Pernthaler, J., T. Posch, K. Simek, J. Vrba, R. Psenner, and R. Amann. 1998. Pro­tisten­in­duzierte Pop­u­la­tions­ver­schiebun­gen in einer ex­per­i­mentel­len mik­robi­el­len Ge­meinsch­aft. Münch­ner Beiträge zur Ab­wasser-, Fisc­herei- und Fluß­bio­lo­gie 52:117-126. [internal download]

Pernthaler, J., A. Alfreider, B. Sattler, F.-O. Glöckner, R. Amann, and R. Psenner. 1998. Struk­tur­ana­lyse der Bak­ter­i­enge­meinsch­aften in einem hochalpinen See. Münch­ner Beiträge zur Ab­wasser-, Fisc­herei- und Fluß­bio­lo­gie 52:127-136. [internal download]

Meier, H., C. Koob, W. Ludwig, R. Amann, E. Frahm, and K.-H. Schleifer. 1998. Nach­weis von En­ter­okokken mit fluoreszi­er­enden rRNS-gerichteten Sonden zur hy­gien­is­chen Trink­wasserkon­trolle. Münch­ner Beiträge zur Ab­wasser-, Fisc­herei- und Fluß­bio­lo­gie 52:175-200. [internal download]

Wagner, M., P. Hutzler, and R. Amann. 1998. Three di­men­sional ana­lysis of com­plex mi­cro­bial com­munit­ies by com­bin­ing con­focal laser scan­ning mi­cro­scopy and fluor­es­cence in situ hy­brid­iz­a­tion, p. 467-486. In: Di­gital im­age ana­lysis of mi­crobes: ima­ging, morpho­metry, fluoro­metry and motil­ity tech­niques and ap­plic­a­tions. M.H.F. Wilkin­son and F. Schut. (eds.). John Wiley & Sons, Ltd., Chichester, UK. [internal download]

Schramm, A., and R. Amann. 1998. In situ struc­ture and func­tion ana­lysis of biofilms. p.45-54 in: Tech­nik an­aer­ober Prozesse, (Eds.) H. Märkl, R. Steg­mann, DE­CHEM­A­Fachge­spräche Um­welts­chutz, DE­CHEMA e.V., Frank­furt am Main, Ger­many. [internal download]

Amann, R. 1998. En­twicklung und Ein­satz von Nuklein­säuresonden für die in situ-Charak­ter­is­ier­ung natür­licher Bak­ter­i­enge­meinsch­aften, p. 55-72. In: Jahr­buch der Akademie der Wis­senschaften zu Göt­tin­gen, Van den Hoeck & Rup­precht, Göt­tin­gen, Ger­many. [internal download]

Michel, R., R. Hoffmann, K.-D. Müller, R. Amann, and E. N. Schmidt. 1998. Akanthamoeben, Nae­g­ler­ien und an­dere freilebende Amöben als natür­liche Dauer­produzen­ten von nicht kul­tivi­erbaren Bak­ter­ien. Mitt. Österr. Ges. Tropenmed. Para­sitol. 20:85-92. [internal download]

 

1997

Amann, R., N. Springer, W. Schönhuber, W. Ludwig, E.N. Schmidt, K.-D. Müller and R. Michel. 1997. Ob­lig­ate in­tra­cel­lu­lar bac­terial para­sites of acanthamoe­bae re­lated to Chlamydia spp. Appl. En­viron. Mi­cro­biol. 63:115-121. [ncbi page] [download pdf]

Pernthaler, J., T. Posch, K. Simek, J. Vrba, R. Amann, and R. Psenner. 1997. Con­trast­ing bac­terial strategies to co­ex­ist with a fla­gel­late pred­ator in an ex­per­i­mental mi­cro­bial as­semblage. Appl. En­viron. Mi­cro­biol. 63:596-601. [ncbi page] [download pdf]

Erhart, R., D. Bradford, E.M. Seviour, R.J. Seviour, R.I. Amann, and L.L. Blackall. 1997. De­vel­op­ment and use of fluor­es­cent in situ hy­brid­isa­tion probes for the iden­ti­fic­a­tion and enu­mer­a­tion of "Microthrix parvicella" in ac­tiv­ated sludge. Syst. Appl. Mi­cro­biol. 20:310-318. [sciencedirect page] [internal download]

Eberl, L., R. Schulze, A. Ammendola, O. Geisenberger, R. Erhart, C. Sternberg, S. Molin, and R. Amann. 1997. Use of green fluor­es­cent pro­tein as a marker for eco­lo­gical stud­ies of ac­tiv­ated sludge com­munit­ies. FEMS Mi­cro­biol. Lett. 149:77-83. [sciencedirect page] [internal download]

Amann, R., F.-O. Glöckner, and A. Neef. 1997. Mod­ern meth­ods in sub­sur­face mi­cro­bi­o­logy: in situ iden­ti­fic­a­tion of mi­croor­gan­isms with nuc­leic acid probes. FEMS Mi­cro­biol. Rev. 20(3/4):191-200. [sciencedirect page] [internal download]

Steinert, M., L. Emödy, R. Amann, and J. Hacker. 1997. Re­sus­cit­a­tion of vi­able but non­cul­tur­able Legionella pneumophila Phil­adelphia JR32 by Acanthamoeba castellanii. Appl. En­viron. Mi­cro­biol. 63:2047-2053. [ncbi page] [download pdf]

Kosse, D., H. Seiler, R. Amann, W. Ludwig, and S. Scherer. 1997. Iden­ti­fic­a­tion of yoghurt-spoil­ing yeasts with 18S rRNA-tar­geted oli­go­nuc­leotide probes. Syst. Appl. Mi­cro­biol. 20:468-480. [sciencedirect page] [internal download]

Snaidr, J., R. Amann, I. Huber, W. Ludwig, and K.-H. Schleifer. 1997. Phylo­gen­etic ana­lysis and in situ iden­ti­fic­a­tion of bac­teria in ac­tiv­ated sludge. Appl. En­viron. Mi­cro­biol. 63:2884-2896. [ncbi page] [download pdf]

Amann, R., N. Springer, W. Schönhuber, W. Ludwig, E. N. Schmidt, K.-D. Müller and R. Michel. 1997. Coccoid ob­lig­ate in­tra­cel­lu­lar para­sites of acanthamoe­bae are dis­tantly re­lated to the genus Chlamydia. En­do­cyt­o­bi­osis & Cell Res. 12:99-101. [ecs page] [internal download]

Lemmer, H., A. Zaglauer, A. Neef, H. Meier, and R. Amann. 1997. De­ni­tri­fic­a­tion in a meth­anol-fed fixed bed re­actor. Part 2: Com­pos­i­tion and eco­logy of the bac­terial com­munity in the biofilms. Wa­ter Res. 31:1903-1908. [sciencedirect page] [internal download]

Meier, H., C. Koob, W. Ludwig, R. Amann, E. Frahm, S. Hoffmann, U. Obst, and K.-H. Schleifer. 1997. De­tec­tion of en­tero­cocci with rRNA-tar­geted DNA probes and their use for hy­gienic drink­ing wa­ter con­trol. Wat. Sci. Tech. 35(11-12):437-444. [wst page] [internal download]

Schönhuber, W., B. Fuchs, S. Juretschko, and R. Amann. 1997. Im­proved sens­it­iv­ity of whole cell hy­brid­iz­a­tion by the com­bin­a­tion of horseradish per­ox­i­dase-labeled oli­go­nuc­leotides and tyr­am­ide sig­nal amp­li­fic­a­tion. Appl. En­viron. Mi­cro­biol. 63:3268-3273. [ncbi page] [download pdf]

Schramm, A., L. H. Larsen, N. P. Revsbech, and R. I. Amann. 1997. Struc­ture and func­tion of a ni­tri­fy­ing biofilm as de­term­ined by mi­cro­elec­trodes and fluor­es­cent oli­go­nuc­leotide probes. Wat. Sci. Tech. 36(1):263-270. [wst page] [internal download]

Zarda, B., D. Hahn, A. Chatzinotas, W. Schönhuber, A. Neef, R. I. Amann, and J. Zeyer. 1997. Ana­lysis of bac­terial com­munity struc­ture in bulk soil by in situ hy­brid­iz­a­tion. Arch. Mi­cro­biol. 168:185-192. [springerlink page] [internal download]

Wallner, G., B. Fuchs, W. Beisker, S. Spring, and R. Amann. 1997. Flow cyto­met­ric sort­ing of mi­croor­gan­isms for mo­lecu­lar ana­lysis. Appl. En­viron. Mi­cro­biol. 63: 4223-4331. [ncbi page] [download pdf]

Lischewski, A., M. Kretschmar, H. Hof, R. Amann, J. Hacker, and J. Morschhäuser. 1997. De­tec­tion and iden­ti­fic­a­tion of Candida spe­cies in ex­per­i­ment­ally in­fec­ted tis­sue and hu­man blood by rRNA-spe­cific fluor­es­cent in situ hy­brid­iz­a­tion. J. Clin. Mi­cro­biol. 35:2943-2948. [ncbi page] [download pdf]

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Wagner, M., and R. Amann. 1997. Mo­lecu­lar tech­niques for de­term­in­ing mi­cro­bial com­munity struc­tures in ac­tiv­ated sludge, p. 61-72. In: Mi­cro­bial com­munity ana­lysis: the key to the design of bio­lo­gical wastewa­ter treat­ment sys­tems. IAWQ Sci­entific and Tech­nical Re­port No. 5 Eds. T.E. Clo­ete and N.Y.O. Muy­ima. Uni­versity Press, Cam­bridge, UK. [internal download]

Amann, R.. 1997. Fluor­es­cent, rRNA-tar­geted oli­go­nuc­leotide probes for ana­lyz­ing the in situ struc­ture and dy­nam­ics of com­plex mi­cro­bial com­munit­ies, p. 141-145. In: Pro­ceed­ings of the In­ter­na­tional Sym­posium on En­vir­on­mental Mi­cro­bi­o­logy, Oos­tende, April 21-23, 1997. H. Ver­achtert and W. Ver­straete (eds.). Tech­no­lo­gisch In­stituut, Uni­versiteit Gent, Gent, Bel­gium. [internal download]

1996

Springer, N., R. Amann, W. Ludwig, K.-H. Schleifer, and H. Schmidt. 1996. Polynucleobacter necessarius, an ob­lig­ate bac­terial en­dosym­biont of the hy­po­trich­ous cili­ate Euplotes ediculatus, is a mem­ber of the ß-sub­class of Pro­teo­bac­teria. FEMS Mi­crob. Lett. 135:333-336. [ncbi page] [internal download]

Wagner, M., G. Rath, H.-P. Koops, J. Flood, and R. Amann. 1996. In situ ana­lysis of ni­tri­fy­ing bac­teria in sewage treat­ment plants. Wat. Sci. Tech. 34(1-2):237-244. [wst page] [internal download]

Kämpfer, P., R. Erhart, C. Beimfohr, J. Böhringer, M. Wagner, and R. Amann. 1996. Char­ac­ter­iz­a­tion of bac­terial com­munit­ies from ac­tiv­ated sludge plant: cul­ture-de­pend­ent nu­mer­ical iden­ti­fic­a­tion versus in situ iden­ti­fic­a­tion us­ing group- and genus-spe­cific rRNAtar­geted oli­go­nuc­leotide probes. Mi­crob. Ecol. 32:101-121. [ncbi page] [internal download]

Manz, W., R. Amann, W. Ludwig, M. Vancanneyt, and K.-H. Schleifer. 1996. Ap­plic­a­tion of a suite of 16S rRNA-spe­cific oli­go­nuc­leotide probes de­signed to in­vest­ig­ate bac­teria of the phylum cyto­phaga-fla­vobac­ter-bac­teroides in the nat­ural en­vir­on­ment. Mi­cro­biol. 142:1097-1106. [ncbi page] [internal download]

Alfreider, A., J. Pernthaler, R. Amann, B. Sattler, F.-O. Glöckner, A. Wille and R. Psenner. 1996. Com­munity ana­lysis of the bac­terial as­semblages in the winter cover and pela­gic lay­ers of a high moun­tain lake us­ing in situ hy­brid­iz­a­tion. Appl. En­viron. Mi­cro­biol. 62:2138-2144. [ncbi page] [download pdf]

Weiss, P., B. Schweitzer, R. Amann, and M. Simon. 1996. Iden­ti­fic­a­tion in situ and dy­nam­ics of bac­teria on lim­netic or­ganic ag­greg­ates (lake snow). Appl. En­viron. Mi­cro­biol. 62:1998-2005. [ncbi page] [download pdf]

Glöckner, F.O., R. Amann, A. Alfreider, J. Pernthaler, R. Psenner, K. Trebesius, and K.-H. Schleifer. 1996. An op­tim­ized in situ hy­brid­iz­a­tion pro­tocol for plank­tonic bac­teria. Syst. Appl. Mi­cro­biol. 19:403-406. [sciencedirect page] [internal download]

Lange, M., N. Simon, L. Guillou, D. Vaulot, R. Amann, W. Ludwig, and L. K. Medlin. 1996. Iden­ti­fic­a­tion of the class Prym­ne­siophyceae and the genus Phae­o­cystis with rRNAtar­geted nuc­leic acid probes. J. Phycol. 32:858-868. [wiley online library] [internal download]

Amann, R., J. Snaidr, M. Wagner, W. Ludwig and K.-H. Schleifer. 1996. In situ visu­al­iz­a­tion of high ge­netic di­versity in a nat­ural mi­cro­bial com­munity. J. Bac­teriol. 178: 3496-3500. [ncbi page] [download pdf]

Lischewski, A., R. I. Amann, D. Harmsen, H. Merkert, J. Hacker and J. Mörschenhäuser. 1996. Spe­cific de­tec­tion of Candida albicans and Candida tropicalis by fluor­es­cent in situ ybrid­iz­a­tion with an 18S rRNA-tar­geted oli­go­nuc­leotide probe. Mi­cro­bi­o­logy 142:2731-2740. [ncbi page] [internal download]

Lloyd, D., A. G. Williams, R. Amann, A. J. Hayes, L. Durrant, and J. R. Ralphs. 1996. In­tra­cel­lu­lar proka­ryotes in ru­men cili­ate pro­to­zoa: de­tec­tion by con­focal laser scan­ning mi­cro­scopy after in situ hy­brid­iz­a­tion with fluor­es­cent 16S rRNA probes. Europ. J. Prot­istol. 32:523-53. [sciencedirect page] [download pdf]

Nübel, U., B. Engelen, A. Felske, J. Snaidr, A. Wieshuber, R. I. Amann, W. Ludwig, and H. Backhaus. 1996. Se­quence het­ero­gen­eit­ies of genes en­cod­ing 16S rRNAs in Paenibacillus polymyxa de­tec­ted by tem­per­at­ure gradi­ent gel elec­tro­phoresis. J. Bac­teriol. 178:5636-5643. [ncbi page] [download pdf]

Neef, A., A. Zaglauer, H. Meier, R. Amann, H. Lemmer, and K.-H. Schleifer. 1996. Pop­u­la­tion ana­lysis in a de­ni­tri­fy­ing sand fil­ter: con­ven­tional and in situ iden­ti­fic­a­tion of Paracoccus sp. in meth­anol-fed biofilms. Appl. En­viron. Mi­cro­biol. 62:4329-4339. [ncbi page] [download pdf]

Schramm, A., L.H. Larsen, N. P. Revsbech, N. B. Ramsing, R. Amann, and K.-H. Schleifer. 1996. Struc­ture and func­tion of a ni­tri­fy­ing biofilm as de­term­ined by in situ hy­brid­iz­a­tion and mi­cro­elec­trodes. Appl. En­viron. Mi­cro­biol. 62:4641-4647. [ncbi page] [download pdf]

Wallner, G., I. Steinmetz, D. Bitter-Suermann, and R. Amann. 1996. Com­bin­a­tion of rRNA-tar­geted hy­brid­iz­a­tion probes and im­muno-probes for the iden­ti­fic­a­tion of bac­teria by flow cyto­metry. Syst. Appl. Mi­cro­biol. 19:569-576. [sciencedirect page] [internal download]

Amann, R., W. Ludwig, R. Schulze, S. Spring, E. Moore, and K.-H. Schleifer. 1996. rRNA-Tar­geted oli­go­nuc­leotide probes for the iden­ti­fic­a­tion of genu­ine and former pseudo­mon­ads. Syst. Appl. Mi­cro­biol. 19:501-509. [sciencedirect page] [internal download]

Rothemund, C., R. Amann, S. Klugbauer, W. Manz, C. Bieber, K.-H. Schleifer, and P. Wilderer. 1996. Mi­cro­flora of 2,4-di­chlorophen­oxy­acetic acid de­grad­ing biofilms on gas per­meable mem­branes. Syst. Appl. Mi­cro­biol. 19:608-615. [sciencedirect page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R.. 1996. In situ-Iden­ti­fiz­ier­ung von Mik­roor­gan­is­men mit rRNS-gerichteten Oli­go­nukleot­id­sonden. Biospek­trum 2 (1):27-32. [internal download]

Springer, N., R. Amann, and W. Ludwig. 1996. The design and ap­plic­a­tion of ri­bosomal RNA-tar­geted, fluor­es­cent oli­go­nuc­leotide probes for the iden­ti­fic­a­tion of en­dosym­bionts in pro­to­zoa, p. 133-144. In: Meth­ods in Mo­lecu­lar Bio­logy, Vol. 50: Spe­cies Dia­gnostics Pro­to­cols: PCR and other nuc­leic acid meth­ods. J.P. Clapp (Ed.), Hu­mana Press Inc., To­towa NJ, USA. [ncbi page] [internal download]

Wallner, G., and R. Amann. 1996. Durch­flußzyto­met­rische Un­ter­suchung von Belebtsch­lamm mit rRNS-gerichteten Oli­go­nukleot­id­sonden, p. 81-92. In H. Lem­mer, T. Griebe, H.-C. Flem­ming (eds.), Mik­robi­elle Öko­lo­gie des Ab­wassers. Springer Ver­lag, Ber­lin. [internal download]

Wagner, M., and R. Amann. 1996. Die An­wendung von in situ Hy­brid­isier­ungs­sonden zur Aufklärung von Struk­tur und Dy­namik der mik­robi­el­len Biozönosen in der Ab­wasser­rein­i­gung, p. 93-110. In H. Lem­mer, T. Griebe, H.-C. Flem­ming (eds.), Mik­robi­elle Öko­lo­gie des Ab­wassers. Springer Ver­lag, Ber­lin. [internal download]

 

1995

Manz, W., R. Szewzyk, U. Szewzyk, P. Hutzler, R. Amann and K. H. Schleifer. 1995. In situ iden­ti­fic­a­tion of Legionellaceae us­ing spe­cific rRNA-tar­geted oli­go­nuc­leotide probes and con­focal laser scan­ning mi­cro­scopy. Mi­cro­biol. 141:29-39. [ncbi page] [internal download]

Rossello-Mora, R. A., M. Wagner, R. Amann, and K. H. Schleifer. 1995. The abund­ance of Zoogloea ramigera in sewage treat­ment plants. Appl. En­viron. Mi­cro­biol. 61:702-707. [ncbi page] [download pdf]

Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylo­gen­etic iden­ti­fic­a­tion and in situ de­tec­tion of in­di­vidual mi­cro­bial cells without cul­tiv­a­tion. Mi­cro­biol. Rev. 59:143-169. [ncbi page] [download pdf]

Assmus, B., P. Hutzler, G. Kirchhof, R. Amann, J.R. Lawrence, and A. Hartmann. 1995. In situ loc­al­iz­a­tion of Azospirillum brasilense in the rhizo­sphere of wheat us­ing fluor­es­cently labeled, rRNA-tar­geted oli­go­nuc­leotide probes and scan­ning con­focal laser mi­cro­scopy. Appl. En­viron. Mi­cro­biol. 61:1013-1019. [ncbi page] [download pdf]

Raskin, L., R. I. Amann, L. K. Poulsen, B. E. Rittmann, and D. A. Stahl. 1995. Use of ri­bosomal RNA-based mo­lecu­lar probes for char­ac­ter­iz­a­tion of com­plex mi­cro­bial com­munit­ies in an­aer­obic biofilms. Wat. Sci. Techol. 31:261-272. [wst page] [internal download]

Wallner, G., R. Erhart, and R. Amann. 1995. Flow cyto­met­ric ana­lysis of ac­tiv­ated sludge with rRNA-tar­geted probes. Appl. En­viron. Mi­cro­biol. 61:1859-1866. [ncbi page] [download pdf]

Fischer, K., D. Hahn, R. I. Amann, O. Daniel, and J. Zeyer. 1995. In situ ana­lysis of the bac­terial com­munity in the gut of the earth­worm Lumbricus terrestris L. by whole-cell hy­brid­iz­a­tion. Can. J. Mi­cro­biol. 41:666-673. [cjm page] [internal download]

Neef, A., R. Amann, and K.-H. Schleifer. 1995. De­tec­tion of mi­cro­bial cells in aer­o­sols us­ing nuc­leic acid probes. Syst. Appl. Mi­cro­biol. 18:113-122. [sciencedirect page] [internal download]

Amann, R. I.. 1995. Fluor­es­cently la­belled, rRNA-tar­geted oli­go­nuc­leotide probes in the study of mi­cro­bial eco­logy. Mol. Ecol. 4:543-554. [wiley online library] [internal download]

Rossello-Mora, R. A., W. Ludwig, P. Kämpfer, R. Amann, and K.-H. Schleifer. 1995. Ferrimonas balearica, gen. nov., spec. nov., a new mar­ine fac­ultat­ive Fe(III)-re­du­cing bac­terium. Syst. Appl. Mi­cro­biol. 18:196-202. [sciencedirect page] [internal download]

Wagner, M., G. Rath, R. Amann, H.-P. Koops, and K.-H. Schleifer. 1995. In situ iden­ti­fic­a­tion of am­mo­nia-ox­id­iz­ing bac­teria. Syst. Appl. Mi­cro­biol. 18:251-264. [sciencedirect page] [internal download]

Schleifer, K.-H., M. Ehrmann, C. Beimfohr, E. Brockmann, W. Ludwig and R. Amann. 1995. Ap­plic­a­tion of mo­lecu­lar meth­ods for the clas­si­fic­a­tion and iden­ti­fic­a­tion of lactic acid bac­teria. Int. Dairy J. 5:1081-1094. [sciencedirect page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R. I.. 1995. In situ iden­ti­fic­a­tion of mi­croor­gan­isms by whole cell hy­brid­iz­a­tion with rRNA-tar­geted nuc­leic acid probes, 3.3.6., p. 1-15. In: Mo­lecu­lar Mi­cro­bial Eco­logy Manual. A.D.L. Ak­ker­man, J.D. van El­sas and F.J. de Bruijn (eds.), Kluwer Aca­demic Pub­lish­ers, Dordrecht, Neth­er­lands. [internal download]

Amann, R. I.. 1995. In situ hy­brid­iz­a­tion with rRNA-tar­geted probes as a tool to study the com­positon and dy­nam­ics of mi­cro­bial com­munit­ies, p. 92. In: Beijer­inck Centen­nial. Mi­cro­bial Physiology and Gene Reg­u­la­tion: Emer­ging Prin­ciples and Ap­plic­a­tions. W.A. Schef­fers and J.P. van Dijken (Eds.), Delft Uni­versity Press, The Neth­er­lands. [internal download]

Stahl, D. A., R. I. Amann, L. K. Poulsen, L. Raskin, and W. C. Capman. 1995. Use of fluor­es­cent probes for de­term­in­at­ive mi­cro­scopy of meth­ano­genic ar­chaea, p. 111-121. In: Ar­chaea: a labor­at­ory manual, Vol. 2, Meth­ano­gens. K.R. Sowers & H.J. Schreier (Eds.), Cold Spring Har­bor Press, Cold Spring Har­bor, USA. [internal download]

Wedi, D., M. Wagner, R. Amann, R. Erhart, H. Lemmer, and P. A. Wilderer. 1995. In situ-Nach­weis der un­ter­geord­neten Rolle von Bak­ter­ien der Gat­tung Acinetobacter bei der er­höhten bio­lo­gis­chen P-Elim­in­a­tion. GWF Wasser Ab­wasser 136:17-23. [internal download]

 

1994

Szewzyk, U., W. Manz, R. Amann, K.-H. Schleifer, and T.-A. Stenström. 1994. Growth and in situ de­tec­tion of a patho­genic Escherichia coli in biofilms of a het­ero­trophic wa­ter­bac­terium by use of 16S- and 23S-rRNA-dir­ec­ted fluor­es­cent oli­go­nuc­leotide probes. FEMS Mi­cro­biol. Ecol. 13:169-176. [sciencedirect page] [internal download]

Wagner, M., R. Erhart, W. Manz, R. Amann, H. Lemmer, D. Wedi, and K. H. Schleifer. 1994. De­vel­op­ment of an rRNA-tar­geted oli­go­nuc­leotide probe spe­cific for the genus Acinetobacter and its ap­plic­a­tion for in situ mon­it­or­ing in ac­tiv­ated sludge. Appl. En­viron. Mi­cro­biol. 60:792-800. [ncbi page] [download pdf]

Aznar, R., W. Ludwig, R. I. Amann, and K.-H. Schleifer. 1994. Se­quence de­term­in­a­tion of rRNA genes of patho­genic Vibrio spe­cies and whole-cell iden­ti­fic­a­tion of Vibrio vulnificus with rRNA-tar­geted oli­go­nuc­leotide probes. Int. J. Syst. Bac­teriol. 44:330-337. [ncbi page] [internal download]

Manz, W., M. Wagner, R. Amann, and K. H. Schleifer. 1994. In situ char­ac­ter­iz­a­tion of the mi­cro­bial con­sor­tia act­ive in two wastewa­ter treat­ment plants. Wat. Res. 28:1715-1723. [sciencedirect page] [internal download]

Burggraf, S., T. Mayer, R. Amann, S. Schadhauser, C. R. Woese, and K. O. Stetter. 1994. Identi­fy­ing mem­bers of the do­main Archaea with rRNA-tar­geted oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 60:3112-3119. [ncbi page] [download pdf]

Trebesius, K., R. Amann, W. Ludwig, K. Mühlegger, and K. H. Schleifer. 1994. Iden­ti­fic­a­tion of whole fixed bac­terial cells with non­ra­dio­act­ive 23S rRNA-tar­geted poly­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 60:3228-3235. [ncbi page] [download pdf]

Wagner, M., R. Amann, H. Lemmer, W. Manz, and K. H. Schleifer. 1994. Prob­ing ac­tiv­ated sludge with fluor­es­cently labeled rRNA tar­geted oli­go­nuc­leotides. Wat. Sci. Tech. 29:15-23. [wst page] [internal download]

Roller, C., M. Wagner, R. Amann, W. Ludwig, and K.-H. Schleifer. 1994. In situ prob­ing of Gram-pos­it­ive bac­teria with high DNA G+C con­tent us­ing 23S rRNA-tar­geted oli­go­nuc­leotides. Mi­cro­biol. 140:2849-2858. [ncbi page] [internal download]

Lin, C., B. Flesher, W. C. Capman, R. I. Amann, and D. A. Stahl. 1994. Taxon-spe­cific hy­brid­iz­a­tion probes for fiber-di­gest­ing bac­teria sug­gest novel gut-as­so­ci­ated Fibrobacter. Syst. Appl. Mi­cro­biol. 17:418-424. [sciencedirect page] [internal download]

Lloyd, D., J. Ralphs, L. Durrant, A.G. Williams, and R. Amann. 1994. Stud­ies of the bac­terial en­dosym­bionts of "an­aer­obic pro­to­zoa" us­ing fluor­es­cently-la­belled rRNA-tar­geted oli­go­nuc­leotide probes. Bio­chem. Soc. Trans. 22:323S. [ncbi page] [internal download]

Wagner, M., R. Amann, P. Kämpfer, B. Assmus, A. Hartmann, P. Hutzler, N. Springer, and K. H. Schleifer. 1994. Iden­ti­fic­a­tion and in situ de­tec­tion of gram-neg­at­ive fil­a­ment­ous bac­teria in ac­tiv­ated sludge. Syst. Appl. Mi­cro­biol. 17:405-417. [sciencedirect page] [internal download]

Polz, M. F., D. L. Distel, B. Zarda, R. Amann, H. Felbeck, J. A. Ott, and C. M. Cavanaugh. 1994. Phylo­gen­etic ana­lysis of a highly spe­cific as­so­ci­ation between ec­tosym­bi­otic, sul­fur ox­id­iz­ing bac­teria and a mar­ine nem­at­ode. Appl. En­viron. Mi­cro­biol. 60:4461-4467. [ncbi page] [download pdf]

Wagner, M., B. Aßmus, A. Hartmann, P. Hutzler, and R. Amann. 1994. In situ ana­lysis of mi­cro­bial con­sor­tia in ac­tiv­ated sludge us­ing fluor­es­cently la­belled, rRNA-tar­geted oli­go­nuc­leotide probes and con­focal scan­ning laser mi­cro­scopy. J. Mi­cro­scopy 176:181-187. [ncbi page] [internal download]

Spring, S., R. Amann, W. Ludwig, K.-H. Schleifer, D. Schüler, K. Poralla, and N. Petersen. 1994. Phylo­gen­etic ana­lysis of un­cul­tured mag­netotactic bac­teria from the al­phas­ub­class of Proteobacteria. Syst. Appl. Mi­cro­biol. 17:501-508. [sciencedirect page] [internal download]

Rossello-Mora, R. A., F. Caccavo, Jr., K. Osterlehner, N. Springer, S. Spring, D. Schüler, W. Ludwig, R. Amann, M. Vanncanneyt and K. H. Schleifer. 1994. Isol­a­tion and taxo­nomic char­ac­ter­iz­a­tion of a halo­tol­er­ant, fac­ultat­ively iron-re­du­cing bac­terium. Syst. Appl. Mi­cro­biol. 17:569-573. [sciencedirect page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R., B. Zarda, K. H. Trebesius, W. Ludwig, and K. H. Schleifer. 1994. Rapid iden­ti­fic­a­tion and in situ de­tec­tion of mi­croor­gan­isms us­ing fluor­es­cent rRNA-tar­geted oli­go­nuc­leotides, p. 237-244. In: Rapid Meth­ods and Auto­ma­tion in Mi­cro­bi­o­logy and Im­mun­o­logy. R.C. Spen­cer, E.P. Wright and S.W.B. New­som (Eds.), In­ter­cept Ltd., An­dover, UK.

Amann, R., and W. Ludwig. 1994. Typ­ing in situ with Probes, pp. 115-135. In: Bac­terial Di­versity and Sys­tem­at­ics. F.G. Priest, A. Ramos-Cor­men­zana, and B.J. Tin­dall (Eds.), Plenum, New York, USA. [internal download]

Amann, R., W. Ludwig, and K. H. Schleifer. 1994. Iden­ti­fic­a­tion of non­cul­tur­able bac­teria: a chal­len­ging task for the mo­lecu­lar tax­onom­ist. ASM News 60:360-365.

Hahn, D., R. Amann, and J. Zeyer. 1994. Oli­go­nuc­leotide probes for the de­tec­tion and iden­ti­fic­a­tion of bac­teria, p. 163-171. In: Im­prov­ing plant pro­ductiv­ity with rhizo­sphere bac­teria. M.H. Ry­der, P.M. Steph­ens, and G.D. Bowen (Eds.), CSIRO, Aus­tralia.

Ludwig, W., and R. Amann. 1994. Design and ap­plic­a­tion of rRNA-tar­geted spe­cific hy­brid­iz­a­tion probes. Soils News­let­ter 17:16.

 

1993

Wallner, G., R. Amann, and W. Beisker. 1993. Op­tim­iz­ing fluor­es­cent in situ hy­brid­iz­a­tion with rRNA-tar­geted oli­go­nuc­leotide probes for flow cyto­met­ric iden­ti­fic­a­tion of mi­croor­gan­isms. Cyto­metry 14:136-143. [ncbi page] [internal download]

Wagner, M., R. Amann, H. Lemmer, and K. H. Schleifer. 1993. Prob­ing ac­tiv­ated sludge with oli­go­nuc­leotides spe­cific for pro­teo­bac­teria: in­ad­equacy of cul­ture-de­pend­ent meth­ods for de­scrib­ing mi­cro­bial com­munity struc­ture. Appl. En­viron. Mi­cro­biol. 59:1520-1525. [ncbi page] [download pdf]

Hahn, D., R. I. Amann, and J. Zeyer. 1993. Whole cell hy­brid­iz­a­tion of Frankia strains with fluor­es­cence- or digox­i­genin-labeled, 16S rRNA-tar­geted oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 59:1709-1716. [ncbi page] [download pdf]

Manz, W., U. Szewzyk, P. Eriksson, R. Amann, K. H. Schleifer, and T.-A. Stenström. 1993. In situ iden­ti­fic­a­tion of bac­teria in drink­ing wa­ter and ad­join­ing biofilms by hy­brid­iz­a­tion with 16S and 23S rRNA-dir­ec­ted fluor­es­cent oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 59:2293-2298. [ncbi page] [download pdf]

Spring, S., R. Amann, W. Ludwig, K. H. Schleifer, H. van Gemerden, and N. Petersen. 1993. Dom­in­at­ing role of an un­usual mag­netotactic bac­terium in the mi­croaero­philic zone of a fresh­wa­ter sed­i­ment. Appl. En­viron. Mi­cro­biol. 59:2397-2403. [ncbi page] [download pdf]

Beimfohr, C., A. Krause, R. Amann, W. Ludwig, and K. H. Schleifer. 1993. In situ iden­ti­fic­a­tion of lacto­cocci, en­tero­cocci and strep­to­cocci. Syst. Appl. Mi­cro­biol. 16:450-456. [sciencedirect page] [internal download]

Hahn, D., R. I. Amann, and J. Zeyer. 1993. De­tec­tion of mRNA in Streptomyces cells by in situ hy­brid­iz­a­tion with digox­i­genin-labeled probes. Appl. En­viron. Mi­cro­biol. 59:2753-2757. [ncbi page] [download pdf]

Springer, N., W. Ludwig, R. Amann, H. J. Schmidt, H.-D. Görtz, and K.-H. Schleifer. 1993. Oc­cur­rence of frag­men­ted 16S rRNA in an ob­lig­ate bac­terial en­dosym­biont of Paramecium caudatum. Proc. Natl. Acad. Sci. USA 90:9892-9895. [ncbi page] [download pdf]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Schleifer, K. H., W. Ludwig, and R. I. Amann. 1993. Nuc­leic acid probes, p. 463-510. In: Hand­book of New Bac­terial Sys­tem­at­ics. M. Good­fel­low and A.G. O'­Don­nell (Eds.), Aca­demic Press Lim­ited, Lon­don, Eng­land. [internal download]

Ludwig, W., and R. Amann. 1993. The rRNA ap­proach: re­con­struc­tion of bac­terial phylo­genies, design and ap­plic­a­tion of spe­cific probes. Soils News­let­ter 16:10-11. [internal download]

Amann, R. I., W. Ludwig, W. Manz, S. Spring, N. Springer, M. Wagner, and K. H. Schleifer. 1993. In situ iden­ti­fic­a­tion of non­cul­tur­able bac­teria with rRNA-tar­geted nuc­leic acid probes, p. 515-520. In: Trends in Mi­cro­bial Eco­logy. R. Guer­rero & C. Ped­ros-Alio (Eds.), Span­ish So­ci­ety for Mi­cro­bi­o­logy, Bar­celona, Spain. [internal download]

Wagner, M., R. Erhart, D. Wedi, and R. Amann. 1993. In-situ-Nach­weis der un­ter­gord­neten Rolle von Acinetobacter in Kläran­la­gen mit bio­lo­gisch er­höhter Phos­phate­limin­ier­ung, p. 91-100. In: Wech­sel­wirkun­gen der bio­lo­gis­chen und chemischen Phos­phore­lim­in­a­tion. H.H. Hahn & R. Trauth (Eds.), Ver­öff. Inst. Sied­lung­swasserbau Uni­versität Karls­ruhe, Band 68. [internal download]

 

1992

Amann, R. I., C. Lin, R. Key, L. Montgomery, and D. A. Stahl. 1992. Di­versity among Fibrobacter isolates: to­wards a phylo­gen­etic and hab­itat-based clas­si­fic­a­tion. Syst. Appl. Mi­cro­biol. 15:23-3. [sciencedirect page] [internal download]

Spring, S., R. Amann, W. Ludwig, K.-H. Schleifer, and N. Petersen. 1992. Phylo­gen­etic di­versity and iden­ti­fic­a­tion of non­cul­tur­able mag­netotactic bac­teria. Syst. Appl. Mi­cro­biol. 15:116-122. [sciencedirect page] [internal download]

Amann, R. I., J. Stromley, R. Devereux, R. Key, and D. A. Stahl. 1992. Mo­lecu­lar and mi­cro­scopic iden­ti­fic­a­tion of sulfate-re­du­cing bac­teria in multis­pe­cies biofilms. Appl. En­viron. Mi­cro­biol. 58:614-623. [ncbi page] [download pdf]

Hahn, D., R. I. Amann, W. Ludwig, A. D. L. Akkermans, and K.-H. Schleifer. 1992. De­tec­tion of mi­cro-or­gan­isms in soil after in situ hy­brid­iz­a­tion with rRNA-tar­geted, fluor­es­cently la­belled oli­go­nuc­leotides. J. Gen. Mi­cro­biol. 138:879-887. [ncbi page] [internal download]

Schleifer, K. H., W. Ludwig, and R. Amann. 1992. Gen­sonden und ihre An­wendung in der Mik­robi­o­lo­gie. Natur­wis­senschaften 79:213-219. [ncbi page] [internal download]

Hicks, R. E., R. I. Amann, and D. A. Stahl. 1992. Dual stain­ing of nat­ural bac­terioplank­ton with 4',6-di­amidino-2-phenylindole and fluor­es­cent oli­go­nuc­leotide probes tar­get­ing king­dom­level 16S rRNA se­quences. Appl. En­viron. Mi­cro­biol. 58:2158-2163. [ncbi page] [download pdf]

Amann, R. I., B. Zarda, D. A. Stahl, and K. H. Schleifer. 1992. Iden­ti­fic­a­tion of in­di­vidual proka­ryotic cells with en­zyme-labeled, rRNA-tar­geted oli­go­nuc­leotide probes. Appl. En­viron. Mi­cro­biol. 58:3007-3011. [ncbi page] [download pdf]

Springer, N., W. Ludwig, V. Drozanski, R. Amann, and K.-H. Schleifer. 1992. The phylo­gen­etic status of Sarcobium lyticum, an ob­lig­ate in­tra­cel­lu­lar bac­terial para­site of small amoeba. FEMS Mi­cro­biol. Lett. 96:199-202. [ncbi page] [internal download]

Manz, W., R. Amann, W. Ludwig, M. Wagner, and K.-H. Schleifer. 1992. Phylo­gen­etic oli­godeoxy­nuc­leotide probes for the ma­jor sub­classes of pro­teo­bac­teria: prob­lems and solu­tions. Syst. Appl. Mi­cro­biol. 15:593-600. [sciencedirect page] [internal download]

Schleifer, K. H., W. Ludwig, and R. Amann. 1992. Ri­bosomal ribo­nuc­leic acid se­quence ana­lysis and hy­brid­iz­a­tion tech­no­logy in the iden­ti­fic­a­tion of mi­croor­gansims. Fresenius J. Anal. Chem. 343:47. [springerlink page] [internal download]

Amann, R., W. Ludwig, and K. H. Schleifer. 1992. Iden­ti­fic­a­tion and in situ de­tec­tion of in­di­vidual bac­terial cells. FEMS Mi­cro­biol. Lett. 100:45-50. [sciencedirect page] [internal download]

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Amann, R., and W. Ludwig. 1992. Un­bekan­ntem Leben auf der Spur: Stammes­geschicht­liche Einord­nung und Iden­ti­fiz­ier­ung von nichtkul­tivi­erbaren Bak­ter­ien. Natur­wis­sen­liche Rundschau 45:348-351. [internal download]

Schleifer, K. H., W. Ludwig, and R. Amann. 1992. Ein­blick in eine ver­borgene Welt. In: TUM Forschung für Bay­ern 3:8-9. Tech­nis­che Uni­versität München. [internal download]

Schleifer, K .H., R. Amann, W. Ludwig, C. Rothemund, N. Springer, and S. Dorn. 1992. Nuc­leic acid probes for the iden­ti­fic­a­tion and in situ de­tec­tion of pseudo­mon­ads, p. 127-134. In: Pseudo­mo­nas: Mo­lecu­lar Bio­logy and Bi­o­tech­no­logy. E. Galli, S. Sil­ver and B. Wi­tholt (Eds.), Amer­ican So­ci­ety for Mi­cro­bi­o­logy, Wash­ing­ton, DC. [internal download]

 

1991

Amann, R. I., N. Springer, W. Ludwig, H.-D. Görtz, and K.-H. Schleifer. 1991. Iden­ti­fic­a­tion in situ and phylo­geny of un­cul­tured bac­terial en­dosym­bionts. Nature (Lon­don) 351:161-164. [ncbi page] [internal download]

Schleifer, K.-H., D. Schüler, S. Spring, M. Weizenegger, R. Amann, W. Ludwig, and M. Köhler. 1991. The genus Magnetospirillum gen. nov.. De­scrip­tion of Magnetospirillum gryphiswaldense sp. nov. and trans­fer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov.. Syst. Appl. Mi­cro­biol. 14:379-385. [sciencedirect page] [internal download]

Zarda, B., R. Amann, G. Wallner, and K. H. Schleifer. 1991. Iden­ti­fic­a­tion of single bac­terial cells us­ing digox­i­genin-la­belled, rRNA-tar­geted oli­go­nuc­leotides. J. Gen. Mi­cro­biol. 137:2823-2830. [ncbi page] [internal download]

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Stahl, D. A., and R. Amann. 1991. De­vel­op­ment and ap­plic­a­tion of nuc­leic acid probes, p. 205-248. In: Nuc­leic Acid Tech­niques in Bac­terial Sys­tem­at­ics. E. Stack­ebrandt and M. Good­fel­low (Eds.), John Wiley and Sons, Chichester, Eng­land. [internal download]

Schleifer, K. H., W. Ludwig, R. Amann, C. Hertel, M. Ehrmann, W. Köhler, and A. Krause. 1991. Phylo­gen­etic re­la­tion­ships of lactic acid bac­teria and their iden­ti­fic­a­tion with nuc­leic acid probes. p. 23-32 In: Actes du col­loque LACTIC 91. G. Novel and J.-F. Le Querler (Eds.) Caen Uni­versity Press, Caen, France. [internal download]

1990

Amann, R. I., L. Krumholz, and D. A. Stahl. 1990. Fluor­es­cent-oli­go­nuc­leotide prob­ing of whole cells for de­term­in­at­ive, phylo­gen­etic, and en­vir­on­mental stud­ies in mi­cro­bi­o­logy. J. Bac­teriol. 172:762-770. [ncbi page] [download pdf]

Amann, R. I., B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, and D. A. Stahl. 1990. Com­bin­a­tion of 16S rRNA-tar­geted oli­go­nuc­leotide probes with flow cyto­metry for ana­lyz­ing mixed mi­cro­bial pop­u­la­tions. Appl. En­viron. Mi­cro­biol. 56:1919-1925. [ncbi page] [download pdf]

1989

 

Book chapters / Non-peer-re­viewed pub­lic­a­tions:

Stahl, D. A., R. Devereux, R. I. Amann, B. Flesher, C. Lin, and J. Stromley. 1989. Ri­bosomal RNA based stud­ies of nat­ural mi­cro­bial di­versity and eco­logy, p. 669-673. In: Re­cent ad­vances in mi­cro­bial eco­logy. T. Hat­tori, Y. Ishida, Y. Maruyama, R. Mor­ita, and A. Uchida (Eds.), Ja­pan Sci­entific So­ci­et­ies Press, Tokio, Ja­pan. [internal download]

1988

Amann, R., P. Sostak, W. Ludwig, and K.-H. Schleifer. 1988. Clon­ing and se­quen­cing of genes en­cod­ing the beta-sub­units of ATP-syn­thases from Enterobacter aerogenes and Flavobacterium ferrugineum. FEMS Mi­cro­biol. Lett. 50:101-106. [sciencedirect page] [internal download]

Amann, R., W. Ludwig, and K.H. Schleifer. 1988. Beta-sub­unit of ATP-syn­thase: a use­ful marker for study­ing the phylo­gen­etic re­la­tion­ship of eu­bac­teria. J. Gen. Mi­cro­biol. 134:2815-2821. [ncbi page] [download pdf]

Amann, R., W. Ludwig, W. Laubinger, P. Dimroth, and K. H. Schleifer. 1988. Clon­ing and se­quen­cing of the gene en­cod­ing the beta-sub­unit of the so­dium ion trans­lo­cat­ing AT­P­syn­thase of Propionigenium modestum. FEMS Mi­cro­biol. Lett. 56:253-259. [sciencedirect page] [internal download]

Amann, R. I. 1988. Die beta-Un­terein­heit der ATP-Syn­thase als phylo­gen­et­ischer Marker bei den Eu­bak­ter­ien. Dis­ser­ta­tion. Tech­nis­che Uni­versität München. [internal download]