- Departments
- Luis Humberto Orellana Retamal
- Publikationen
Publikationen
Publications (*Correspondent author)
31. Viver T, Knittel K, Amann R, *Orellana LH. Deep long-read metagenomic sequencing reveals niche differentiation in carbon cycling potential between benthic and planktonic microbial populations. bioRxiv. https://doi.org/10.1101/2024.06.04.597336
30. Brüwer JD, Sidhu C, Zhao Y, Eich A, Rößler, Orellana LH, Fuchs BM. Globally occurring pelagiphage infections create ribosome-deprived cells. 2024. Nature Communications.
29. González-Madrid G, Navarro CA, Acevedo-López J, Orellana LH, Jerez CA. Possible role of CHAD proteins in copper resistance. Microorganisms. 2024; 12:409
28. Veloso M, Waldisperg A, Arrow P, Berríos-Pastén C, Acosta J, Colque H, Varas MA, Allende ML, Orellana LH, Marcoleta AE. Diversity, Taxonomic Novelty, and Encoded Functions of Salar de Ascotán Microbiota, as Revealed by Metagenome-Assembled Genomes. Microorganisms.2024;11:2819
27. Rodriguez-R LM, Conrad RE, Viver T, Feistel DJ, Lindner BG, Venter SN, Orellana LH, et al. An ANI gap within bacterial species that advances the definitions of intra-species units. mBio. 2024;15:e02696-23.
26. Miksch S, Orellana LH, Oggerin De Orube M, Vidal-Melgosa S, Solanki V, Hehemann J-H, et al. Taxonomic and functional stability overrules seasonality in polar benthic microbiomes. ISME J. 2024;18:wrad005.
25. *Orellana LH, Krüger K, Sidhu C, Amann R. Comparing genomes recovered from time-series metagenomes using long- and short-read sequencing technologies. Microbiome. 2023;11:105.
24. Brüwer JD, Orellana LH, Sidhu C, Klip HCL, Meunier CL, Boersma M, et al. In situ cell division and mortality rates of SAR11, SAR86, Bacteroidetes, and Aurantivirga during phytoplankton blooms reveal differences in population controls. mSystems. 2023;8:e01287-22.
23. Zhang S-Y, Suttner B, Rodriguez-R LM, Orellana LH, Conrad RE, Liu F, et al. ROCker Models for Reliable Detection and Typing of Short-Read Sequences Carrying β-Lactamase Genes. mSystems. 2022;7:e01281-21.
22. *Orellana LH, Francis TB, Ferraro M, Hehemann J-H, Fuchs BM, *Amann RI. Verrucomicrobiota are specialist consumers of sulfated methyl pentoses during diatom blooms. ISME J. 2022;630–41.
21. Viver T, Conrad RE, Orellana LH, Urdiain M, González-Pastor JE, Hatt JK, et al. Distinct ecotypes within a natural haloarchaeal population enable adaptation to changing environmental conditions without causing population sweeps. ISME J. 2021;15:1178–91.
20. Suttner B, Kim M, Johnston ER, Orellana LH, Ruiz-Perez CA, Rodriguez-R LM, et al. Transcriptomic and rRNA:rDNA Signatures of Environmental versus Enteric Enterococcus faecalis Isolates under Oligotrophic Freshwater Conditions. Microbiol Spectr. 2021;9:e00817-21.
19. Ramírez-Fernández L, Orellana LH, Johnston ER, Konstantinidis KT, Orlando J. Diversity of microbial communities and genes involved in nitrous oxide emissions in Antarctic soils impacted by marine animals as revealed by metagenomics and 100 metagenome-assembled genomes. Sci Total Environ. 2021;788:147693.
18. Priest T, *Orellana LH, Huettel B, Fuchs BM, Amann R. Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms. PeerJ. 2021;9:e11721.
17. Karthikeyan S, Orellana LH, Johnston ER, Hatt JK, Löffler FE, Ayala-del-Río HL, et al. Metagenomic Characterization of Soil Microbial Communities in the Luquillo Experimental Forest (Puerto Rico) and Implications for Nitrogen Cycling. Drake HL, editor. Appl Environ Microbiol. 2021;87:e00546-21.
16. Cha G, Meinhardt KA, Orellana LH, Hatt JK, Pannu MW, Stahl DA, et al. The influence of alfalfa‐switchgrass intercropping on microbial community structure and function. Environ. Microbiol. 2021;23:6828–43.
15. Suttner B, Johnston ER, Orellana LH, Rodriguez-R LM, Hatt JK, Carychao D, et al. Metagenomics as a Public Health Risk Assessment Tool in a Study of Natural Creek Sediments Influenced by Agricultural and Livestock Runoff: Potential and Limitations. Appl Environ Microbiol. 2020;86:e02525-19.
14. Grieb A, Francis TB, Krüger K, Orellana LH, Amann R, Fuchs BM. Candidatus Abditibacter, a novel genus within the Cryomorphaceae, thriving in the North Sea. Syst. Appl. Microbiol. 2020;43:126088.
13. Viver T, Orellana LH, Díaz S, Urdiain M, Ramos‐Barbero MD, González‐Pastor JE, et al. Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities. Environ. Microbiol. 2019;21:4300–15.
12. Orellana LH, Hatt JK, Iyer R, Chourey K, Hettich RL, Spain JC, et al. Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer. Sci Rep. 2019;9:17630.
11. Orellana LH, Francis TB, Krüger K, Teeling H, Müller M-C, Fuchs BM, et al. Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota. ISME J. 2019;13:3024–36.
10. Viver T, Orellana LH, González-Torres P, Díaz S, Urdiain M, Farías ME, et al. Genomic comparison between members of the Salinibacteraceae family, and description of a new species of Salinibacter (Salinibacter altiplanensis sp. nov.) isolated from high altitude hypersaline environments of the Argentinian Altiplano. Syst. Appl. Microbiol. 2018;41:198–212.
9. Orellana LH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT. Year-Round Shotgun Metagenomes Reveal Stable Microbial Communities in Agricultural Soils and Novel Ammonia Oxidizers Responding to Fertilization. Appl Environ Microbiol. 2018;84:e01646-17.
8. Cardenas E, Orellana LH, Konstantinidis KT, Mohn WW. Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones. Sci Rep. 2018;8:3142.
7. Viver T, Orellana LH, Hatt JK, Urdiain M, Díaz S, Richter M, et al. The low diverse gastric microbiome of the jellyfish Cotylorhiza tuberculata is dominated by four novel taxa. Environ. Microbiol. 2017;19:3039–58.
6. Orellana LH, Rodriguez-R LM, Konstantinidis KT. ROCker: accurate detection and quantification of target genes in short-read metagenomic data sets by modeling sliding-window bitscores. Nucleic Acids Res. 2016;gkw900.
5. Martínez-Bussenius C, Navarro CA, Orellana LH, Paradela A, Jerez CA. Global response of Acidithiobacillus ferrooxidans ATCC 53993 to high concentrations of copper: A quantitative proteomics approach. J. Proteom. 2016;145:37–45.
4. Higgins SA, Welsh A, Orellana LH, Konstantinidis KT, Chee-Sanford JC, Sanford RA, et al. Detection and Diversity of Fungal Nitric Oxide Reductase Genes (p450nor) in Agricultural Soils. Appl Environ Microbiol. 2016;82:2919–28.
3. Orellana LH, Rodriguez-R LM, Higgins S, Chee-Sanford JC, Sanford RA, Ritalahti KM, et al. Detecting Nitrous Oxide Reductase (nosZ) Genes in Soil Metagenomes: Method Development and Implications for the Nitrogen Cycle. mBio. 2014;5:e01193-14.
2. Orellana LH, Jerez CA. A genomic island provides Acidithiobacillus ferrooxidans ATCC 53993 additional copper resistance: a possible competitive advantage. Appl Microbiol Biotechnol. 2011;92:761–7.
1. Navarro CA, Orellana LH, Mauriaca C, Jerez CA. Transcriptional and Functional Studies of Acidithiobacillus ferrooxidans Genes Related to Survival in the Presence of Copper. Appl Environ Microbiol. 2009;75:6102–9.