Pub­lika­tionen

Publications (*Correspondent author)

31. Viver T, Knit­tel K, Amann R, *Orellana LH. Deep long-read meta­ge­n­omic se­quen­cing re­veals niche dif­fer­en­ti­ation in car­bon cyc­ling po­ten­tial between benthic and plank­tonic mi­cro­bial pop­u­la­tions. bioRxiv. ht­tps://​doi.org/​10.1101/​2024.06.04.597336

30. Brüwer JD, Sidhu C, Zhao Y, Eich A, Rößler, Orellana LH, Fuchs BM. Glob­ally oc­cur­ring pela­giphage in­fec­tions cre­ate ri­bo­some-de­prived cells. 2024. Nature Com­mu­nic­a­tions.

29. González-Mad­rid G, Nav­arro CA, Acevedo-López J, Orellana LH, Jerez CA. Pos­sible role of CHAD pro­teins in cop­per res­ist­ance. Mi­croor­gan­isms. 2024; 12:409

28. Ve­loso M, Waldis­perg A, Ar­row P, Ber­ríos-Pas­tén C, Acosta J, Colque H, Varas MA, Al­lende ML, Orellana LH, Mar­coleta AE. Di­versity, Taxo­nomic Nov­elty, and En­coded Func­tions of Salar de As­cotán Mi­cro­bi­ota, as Re­vealed by Meta­gen­ome-As­sembled Gen­omes. Mi­croor­gan­isms.2024;11:2819

27. Rodrig­uez-R LM, Con­rad RE, Viver T, Feistel DJ, Lind­ner BG, Venter SN, Orellana LH, et al. An ANI gap within bac­terial spe­cies that ad­vances the defin­i­tions of in­tra-spe­cies units. mBio. 2024;15:e02696-23.

26. Miksch S, Orellana LH, Og­gerin De Orube M, Vidal-Mel­gosa S, So­lanki V, Hehem­ann J-H, et al. Taxo­nomic and func­tional sta­bil­ity over­rules sea­son­al­ity in po­lar benthic mi­cro­bi­o­mes. ISME J. 2024;18:wrad005.

25. *Orellana LH, Krüger K, Sidhu C, Amann R. Com­par­ing gen­omes re­covered from time-series meta­gen­omes us­ing long- and short-read se­quen­cing tech­no­lo­gies. Mi­cro­bi­ome. 2023;11:105.

24. Brüwer JD, Orellana LH, Sidhu C, Klip HCL, Meunier CL, Bo­ersma M, et al. In situ cell di­vi­sion and mor­tal­ity rates of SAR11, SAR86, Bacteroidetes, and Aurantivirga dur­ing phyto­plank­ton blooms re­veal dif­fer­ences in pop­u­la­tion con­trols. mSys­tems. 2023;8:e01287-22.

23. Zhang S-Y, Suttner B, Rodrig­uez-R LM, Orellana LH, Con­rad RE, Liu F, et al. ROCker Mod­els for Re­li­able De­tec­tion and Typ­ing of Short-Read Se­quences Car­ry­ing β-Lactamase Genes. mSys­tems. 2022;7:e01281-21.

22. *Orellana LH, Fran­cis TB, Fer­raro M, Hehem­ann J-H, Fuchs BM, *Amann RI. Verrucomicrobiota are spe­cial­ist con­sumers of sulfated methyl pentoses dur­ing di­atom blooms. ISME J. 2022;630–41.

21. Viver T, Con­rad RE, Orellana LH, Ur­di­ain M, González-Pas­tor JE, Hatt JK, et al. Dis­tinct eco­types within a nat­ural haloar­chaeal pop­u­la­tion en­able ad­apt­a­tion to chan­ging en­vir­on­mental con­di­tions without caus­ing pop­u­la­tion sweeps. ISME J. 2021;15:1178–91.

20. Suttner B, Kim M, John­ston ER, Orellana LH, Ruiz-Perez CA, Rodrig­uez-R LM, et al. Tran­scrip­tomic and rRNA:rDNA Sig­na­tures of En­vir­on­mental versus En­teric Enterococcus faecalis Isol­ates un­der Oli­go­trophic Fresh­wa­ter Con­di­tions. Mi­cro­biol Spectr. 2021;9:e00817-21.

19. Ramírez-Fernán­dez L, Orellana LH, John­ston ER, Kon­stantin­idis KT, Or­lando J. Di­versity of mi­cro­bial com­munit­ies and genes in­volved in ni­trous ox­ide emis­sions in Ant­arc­tic soils im­pacted by mar­ine an­im­als as re­vealed by meta­ge­n­om­ics and 100 meta­gen­ome-as­sembled gen­omes. Sci Total En­viron. 2021;788:147693.

18. Priest T, *Orellana LH, Huettel B, Fuchs BM, Amann R. Mi­cro­bial meta­gen­ome-as­sembled gen­omes of the Fram Strait from short and long read se­quen­cing plat­forms. PeerJ. 2021;9:e11721.

17. Karthikeyan S, Orellana LH, John­ston ER, Hatt JK, Löffler FE, Ay­ala-del-Río HL, et al. Meta­ge­n­omic Char­ac­ter­iz­a­tion of Soil Mi­cro­bial Com­munit­ies in the Luquillo Ex­per­i­mental Forest (Pu­erto Rico) and Im­plic­a­tions for Ni­tro­gen Cyc­ling. Drake HL, ed­itor. Appl En­viron Mi­cro­biol. 2021;87:e00546-21.

16. Cha G, Mein­hardt KA, Orellana LH, Hatt JK, Pannu MW, Stahl DA, et al. The in­flu­ence of al­falfa‐switch­grass in­ter­crop­ping on mi­cro­bial com­munity struc­ture and func­tion. En­viron. Mi­cro­biol. 2021;23:6828–43.

15. Suttner B, John­ston ER, Orellana LH, Rodrig­uez-R LM, Hatt JK, Carychao D, et al. Meta­ge­n­om­ics as a Pub­lic Health Risk As­sess­ment Tool in a Study of Nat­ural Creek Sed­i­ments In­flu­enced by Ag­ri­cul­tural and Live­stock Run­off: Po­ten­tial and Lim­it­a­tions. Appl En­viron Mi­cro­biol. 2020;86:e02525-19.

14. Grieb A, Fran­cis TB, Krüger K, Orellana LH, Amann R, Fuchs BM. Candidatus Ab­dit­ibac­ter, a novel genus within the Cryomorphaceae, thriv­ing in the North Sea. Syst. Appl. Mi­cro­biol. 2020;43:126088.

13. Viver T, Orellana LH, Díaz S, Ur­di­ain M, Ramos‐Barbero MD, González‐Pas­tor JE, et al. Pre­dom­in­ance of de­term­in­istic mi­cro­bial com­munity dy­nam­ics in salt­erns ex­posed to dif­fer­ent light in­tens­it­ies. En­viron. Mi­cro­biol. 2019;21:4300–15.

12. Orellana LH, Hatt JK, Iyer R, Chourey K, Het­tich RL, Spain JC, et al. Com­par­ing DNA, RNA and pro­tein levels for meas­ur­ing mi­cro­bial dy­nam­ics in soil mi­cro­cosms amended with ni­tro­gen fer­til­izer. Sci Rep. 2019;9:17630.

11. Orellana LH, Fran­cis TB, Krüger K, Teel­ing H, Müller M-C, Fuchs BM, et al. Niche dif­fer­en­ti­ation among an­nu­ally re­cur­rent coastal Mar­ine Group II Euryarchaeota. ISME J. 2019;13:3024–36.

10. Viver T, Orellana LH, González-Torres P, Díaz S, Ur­di­ain M, Farías ME, et al. Ge­n­omic com­par­ison between mem­bers of the Salinibacteraceae fam­ily, and de­scrip­tion of a new spe­cies of Salinibacter (Salinibacter altiplanensis sp. nov.) isol­ated from high alti­tude hy­per­saline en­vir­on­ments of the Ar­gen­tinian Al­ti­plano. Syst. Appl. Mi­cro­biol. 2018;41:198–212.

9. Orellana LH, Chee-San­ford JC, San­ford RA, Löffler FE, Kon­stantin­idis KT. Year-Round Shot­gun Meta­gen­omes Re­veal Stable Mi­cro­bial Com­munit­ies in Ag­ri­cul­tural Soils and Novel Am­mo­nia Ox­id­izers Re­spond­ing to Fer­til­iz­a­tion. Appl En­viron Mi­cro­biol. 2018;84:e01646-17.

8. Carde­nas E, Orellana LH, Kon­stantin­idis KT, Mohn WW. Ef­fects of tim­ber har­vest­ing on the ge­netic po­ten­tial for car­bon and ni­tro­gen cyc­ling in five North Amer­ican forest eco­zones. Sci Rep. 2018;8:3142.

7. Viver T, Orellana LH, Hatt JK, Ur­di­ain M, Díaz S, Richter M, et al. The low di­verse gast­ric mi­cro­bi­ome of the jelly­fish Cotylorhiza tuberculata is dom­in­ated by four novel taxa. En­viron. Mi­cro­biol. 2017;19:3039–58.

6. Orellana LH, Rodrig­uez-R LM, Kon­stantin­idis KT. ROCker: ac­cur­ate de­tec­tion and quan­ti­fic­a­tion of tar­get genes in short-read meta­ge­n­omic data sets by mod­el­ing slid­ing-win­dow bitscores. Nuc­leic Acids Res. 2016;gk­w900.

5. Martínez-Bussenius C, Nav­arro CA, Orellana LH, Paradela A, Jerez CA. Global re­sponse of Acidithiobacillus ferrooxidans ATCC 53993 to high con­cen­tra­tions of cop­per: A quant­it­at­ive pro­teo­m­ics ap­proach. J. Pro­teom. 2016;145:37–45.

4. Hig­gins SA, Welsh A, Orellana LH, Kon­stantin­idis KT, Chee-San­ford JC, San­ford RA, et al. De­tec­tion and Di­versity of Fungal Nitric Ox­ide Re­ductase Genes (p450nor) in Ag­ri­cul­tural Soils. Appl En­viron Mi­cro­biol. 2016;82:2919–28.

3. Orellana LH, Rodrig­uez-R LM, Hig­gins S, Chee-San­ford JC, San­ford RA, Rita­lahti KM, et al. De­tect­ing Ni­trous Ox­ide Re­ductase (nosZ) Genes in Soil Meta­gen­omes: Method De­vel­op­ment and Im­plic­a­tions for the Ni­tro­gen Cycle. mBio. 2014;5:e01193-14.

2. Orellana LH, Jerez CA. A ge­n­omic is­land provides Acidithiobacillus ferrooxidans ATCC 53993 ad­di­tional cop­per res­ist­ance: a pos­sible com­pet­it­ive ad­vant­age. Appl Mi­cro­biol Bi­o­tech­nol. 2011;92:761–7.

1. Nav­arro CA, Orellana LH, Mauri­aca C, Jerez CA. Tran­scrip­tional and Func­tional Stud­ies of Acidithiobacillus ferrooxidans Genes Re­lated to Sur­vival in the Pres­ence of Cop­per. Appl En­viron Mi­cro­biol. 2009;75:6102–9.