Pub­lic­a­tions 2020

Ah­merkamp, S., H.K. Marchant, C. Peng, D.Probandt, S. Littmann, M.M.M. Kuypers, M. Holtap­pels. (2020). The ef­fect of sed­i­ment grain prop­er­ties and pore­wa­ter flow on mi­cro­bial abund­ance and res­pir­a­tion in per­meable sed­i­ments. Sci. Rep. 10:3573. (doi:10.1038/s41598-020-60557-7)
Alejandre-Colomo, C., J. Harder, B.M. Fuchs, R. Ros­selló-Móra, R. Amann. (2020). High-through­put cul­ti­va­ti­on of he­te­ro­tro­phic bac­te­ria du­ring a spring phy­to­plank­ton bloom in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126066. (doi:10.1016/j.syapm.2020.126066)
Alejandre-Colomo, C., T. Viver, M.Ur­di­ain, B. Francis, J. Harder, P. Käm­p­fer, R. Amann, and R. Ros­selló-Móra. (2020). Ta­xo­no­mic stu­dy of nine new Winogradskyella spe­cies oc­cur­ring in the shal­low wa­ters of Hel­go­land Roads, North Sea. Pro­po­sal of Winogradskyella schleiferi sp. nov., Winogradskyella costae sp. nov., Winogradskyella helgolandensis sp. nov., Winogradskyella vidalii sp. nov., Winogradskyella forsetii sp. nov., Winogradskyella ludwigii sp. nov., Winogradskyella ursingii sp. nov., Winogradskyella wichelsiae sp. nov., and Candidatus “Wi­no­grad­sky­el­la at­lan­ti­ca” sp. nov. Syst. Appl. Mi­cro­bi­ol. 43:126128. (doi:10.1016/j.syapm.2020.126128)
Alfi­ansah, Y.R., S. Peters, J. Harder, C. Hassen­rück, and A. Gärdes. (2020). Struc­ture and co‑oc­cur­rence pat­terns of bac­terial com­munit­ies as­so­ci­ated with white fae­ces dis­ease out­breaks in Pa­cific white‑leg shrimp Penaeus vannamei aquacul­ture. Sci­ent. Rep. 10:11980. (doi:10.1038/s41598-020-68891-6)
As­sie, A., N. Leisch, V.D.Meier, H. Gruber-Vodicka, H.E. Te­get­meyer, A. Meyerdierks, M. Kleiner, T. Hin­zke, S. Joye, M. Sax­ton, N. Du­bilier, J.M. Petersen. (2020). Ho­ri­zontal ac­quis­i­tion of a patch­work Calvin cycle by sym­bi­otic and free-liv­ing Campylobacterota (formerly Epsilonproteobacteria). ISME J. 14:104-22. (doi:10.1038/s41396-019-0508-7)
Avci, B., K. Krüger, B.M. Fuchs, H. Teeling, R.I. Amann. (2020). Po­ly­sac­cha­ri­de ni­che par­ti­tio­n­ing of dis­tinct Polaribacter cla­des du­ring North Sea spring al­gal blooms. ISME J. 14:1369-83. (doi:10.1038/s41396-020-0601-y)
Cho, H., C.Y. Hwang, J.G. Kim, S. Kang, K. Knittel, A. Choi, S.H. Kim, S.K. Rhee, E.Y. Yang, S. Lee, J.-H. Hyun. (2020). A unique benthic mi­cro­bial com­munity un­der­ly­ing the Phae­o­cystis ant­arc­tica-dom­in­ated Amund­sen Sea polynya, Ant­arc­tica: a proxy for as­sess­ing the im­pact of global changes. Front. Mar. Sci. 6:797. (doi:10.3389/fmars.2019.00797)
Giljan, G., N.A. Ka­men­naya, A. Otto, D. Becher, A. Ellrott, V. Meyer, B.J. Mur­ton, B.M. Fuchs, R.I. Amann, and M.V. Zub­kov. (2020). Bac­terioplank­ton re­veal years-long re­ten­tion of At­lantic deep-ocean wa­ter by the tropic Seamount. Sci­ent. Rep. 10:4715. (doi:10.1038/s41598-020-61417-0)
Grieb, A., T.B. Francis, K. Krüger, L.H. Orellana Retamal, R.I. Amann, and B.M. Fuchs. (2020). Candidatus Ab­di­ti­bac­ter, a no­vel ge­nus wi­t­hin the Cryomorphaceae, thri­ving in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126088. (doi:10.1016/j.syapm.2020.126088)
Hahn, C.J., R. Laso-Perez, F. Vul­cano, K.-M. Vazi­ora­kis, R. Stokke, I.H. Steen, A. Teske, M. Liebeke, K. Knittel, R. Amann and G. We­gener. (2020). "Candidatus Etha­nope­re­dens," a ther­mo­phi­lic ge­nus of Archaea me­dia­ting the an­ae­ro­bic oxi­da­ti­on of etha­ne. mBio11:e00600-20. (doi:10.1128/mBio.00600-20)
Hoff­mann, K., C. Bi­en­hold, P. But­ti­gieg, K. Knittel, R. Laso-Pérez, J. Rapp, A. Boe­t­ius, and P. Of­fre. (2020). Di­versity and meta­bol­ism of Woeseiales bac­teria, global mem­bers of mar­ine sed­i­ment com­munit­ies. ISME J. 14:1042-56.(doi:10.1038/s41396-020-0588-4 )
Klein­di­enst, S., and K. Knit­tel. (2020). An­aer­obic hy­dro­car­bon de­grad­ing sulfate-re­du­cing bac­teria at mar­ine gas and oil seeps. In: Mar­ine hy­dro­car­bon seeps. Mi­cro­bi­o­logy and Biogeo­chem­istry of a global mar­ine hab­itat. (eds). A. Teske & V. Carvalho. Springer Ocean­o­graphy series. Springer Nature Switzer­land, chapter 2, pp. 21-42. (doi:10.1007/978-3-030-34827-4_2)
Kon­stantin­idis, K.T., R. Ros­selló-Móra, and R. Amann. (2020). Ad­van­ta­ges out­weigh con­cerns about us­ing ge­no­me se­quence as type ma­te­ri­al for pro­ka­ryo­tic ta­xo­no­my. En­vi­ron. Mi­cro­bi­ol. 22:819-22. (doi:10.1111/1462-2920.14934)
Munoz, R., H. Teeling, R. Amann, R. Ros­selló-Móra. (2020). An­ce­stry and ad­ap­ti­ve ra­dia­ti­on of Bacteroidetes as as­ses­sed by com­pa­ra­ti­ve ge­no­mics. Syst. Appl. Mi­cro­bi­ol. 43:126065. (doi:10.1016/j.syapm.2020.126065)
Mur­ray, A.E., J. Freuden­stein, S. Gribaldo, R. Hatzen­pichler, P. Hugen­holtz, P.  Käm­p­fer, K.T. Kon­stantin­idis, C.E. Lane, R.T. Papke, D.H. Parks, R. Ros­sello-Mora, M.B. Stott, I.C. Sutcliffe, J.C. Thrash, S.N. Venter, W.B. Whit­man, S.G. Aci­nas, R.I. Amann, K. Ananthara­man, J. Ar­mengaud, B.J. Baker, R.A. Barco, H.B. Bode, E.S. Boyd, C.L. Brady, P. Car­ini, P.S.G. Chain, D.R. Col­man, K.M. DeAn­gelis, D. de Los Rios MA, Es­trada-de Los San­tos P, Dun­lap CA, Eisen JA, Emer­son D, Ettema TJG, Eveil­lard, P.R. Gir­guis, U. Hentschel, J.T. Hol­libaugh, L.A. Hug, W.P. In­s­keep, E.P. Ivan­ova, H.P. Klenk, W.J. Li, K.G. Lloyd, F.E. Löffler, T.P. Makhalan­yane, D.P. Moser, T. Nun­oura, M. Palmer, V. Parro, C. Pedrós-Alió, A.J. Probst, T.H.M. Smits, A.D. Steen, E.T. Steen­kamp, A. Spang, F.J. Stew­art, J.M. Tiedje, P. Van­damme, M. Wag­ner, F.P. Wang, P. Yarza, B.P. Hed­lund, A.L. Rey­sen­bach. (2020). Road­map for na­ming un­cul­ti­va­ted Ar­chaea and Bac­te­ria. Nat. Mi­cro­bi­ol. 5:987-94. (doi:10.1038/s41564-020-0733-x)
Reintjes, G., B.M. Fuchs, R. Amann, and C. Arnosti. (2020). Ex­ten­si­ve Mi­cro­bi­al Pro­ces­sing of Po­ly­sac­cha­ri­des in the South Pa­ci­fic Gyre via Sel­fish Up­take and Ex­tra­cel­lu­lar Hy­dro­ly­sis. Front. Mi­cro­bi­ol. 11:583158. (doi:10.3389/fmicb.2020.583158)
Reintjes, G., B.M. Fuchs, M. Scharfe, K.H. Wilt­shire, R. Amann, C. Arnosti. (2020). Short-term chan­ges in po­ly­sac­cha­ri­de uti­liza­t­i­on me­cha­nisms of ma­ri­ne bac­te­rio­plank­ton du­ring a spring phy­to­plank­ton bloom. bioR­xiv. (doi:10.1101/2020.01.08.899153)
Schultz, D., D. Zühlke, J. Bernhardt, T.B. Francis, D. Al­brecht, C. Hirschfeld, S. Mark­ert, and K. Riedel. (2020). An op­tim­ized meta­pro­teo­m­ics pro­tocol for a hol­istic taxo­nomic and func­tional char­ac­ter­iz­a­tion of mi­cro­bial com­munit­ies from mar­ine particles. En­viron. Mi­cro­biol. Rep. 12:367-76. (doi:10.1111/1758-2229.12842)
van Erk, M.R., D.V. Meier, T. Fer­del­man, J. Harder, I. Buss­mann, and D. de Beer. (2020). Kelp de­pos­ition changes min­er­al­iz­a­tion path­ways and mi­cro­bial com­munit­ies in a sandy beach. Lim­nol. Ocean­ogr. 65:3066-84. (doi:10.1002/lno.11574)
Viver, T., R.E. Con­rad, L.H. Orellana, M. Ur­di­ain, J.E. González-Pas­tor, J.K. Hatt, R. Amann, J. An­tón, K.T. Kon­stantin­idis, and R. Ros­selló-Móra. (2020). Dis­tinct eco­ty­pes wi­t­hin a na­tu­ral ha­lo­ar­chae­al po­pu­la­ti­on en­able ad­ap­ta­ti­on to chan­ging en­vi­ron­men­tal con­di­ti­ons wi­thout cau­sing po­pu­la­ti­on sweeps. ISME J. On­line ahead of print. (doi:10.1038/s41396-020-00842-5)
We­gener, G., K. Knittel, G. Bo­hr­mann, and F. Schubotz. (2020). Benthic deep-sea life as­so­ci­ated with as­phaltic hy­dro­car­bon emis­sions in the South­ern Gulf of Mex­ico. In: Mar­ine hy­dro­car­bon seeps. Mi­cro­bi­o­logy and Biogeo­chem­istry of a global mar­ine hab­itat. (eds). A. Teske & V. Carvalho. Springer Ocean­o­graphy series. Springer Nature Switzer­land, chapter 5, pp. 101-124. (doi:10.1007/978-3-030-34827-4_5)
Wie­gand, S., M. Jo­gler, C. Boedeker, D. Pinto, J. Vollmers, E. Rivas-Marín, T. Kohn, S.H. Peeters, A. Heuer, P. Rast, S. Ober­be­ck­mann, B. Bunk, O. Jeske, A. Meyerdierks, J. E. Store­sund, N. Kall­sch­euer, S. Lücker, O.M. Lage, T. Pohl, B.J. Merkel, P. Horn­bur­ger, R.-W. Müller, F. Brüm­mer, M. Lab­renz, A.M. Spor­mann, H.J.M. Op den Camp, J. Over­mann, R. Amann, M.S.M. Jetten, T. Mascher, M.H. Me­dema, D.P. De­vos, A.-K. Kaster, L. Øvreås, M. Ro­hde, M.Y. Galperin, C. Jo­gler. (2020). Cul­ti­va­ti­on and func­tio­nal cha­rac­te­riza­t­i­on of 79 Planctomycetes un­co­vers their uni­que bio­lo­gy. Na­tu­re Mi­cro­bi­ol. 5:126-40. (doi:10.1038/s41564-019-0588-1)

 

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