Publications 2020

Ahmerkamp, S., H.K. Marchant, C. Peng, D.Probandt, S. Littmann, M.M.M. Kuypers, M. Holtappels. (2020). The effect of sediment grain properties and porewater flow on microbial abundance and respiration in permeable sediments. Sci. Rep. 10:3573. (doi:10.1038/s41598-020-60557-7)
Alejandre-Colomo, C., J. Harder, B.M. Fuchs, R. Rosselló-Móra, R. Amann. (2020). High-through­put cul­ti­va­ti­on of he­te­ro­tro­phic bac­te­ria du­ring a spring phy­to­plank­ton bloom in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126066. (doi:10.1016/j.syapm.2020.126066)
Alejandre-Colomo, C., T. Viver, M.Urdiain, B. Francis, J. Harder, P. Kämpfer, R. Amann, and R. Rosselló-Móra. (2020). Ta­xo­no­mic stu­dy of nine new Winogradskyella spe­cies oc­cur­ring in the shal­low wa­ters of Hel­go­land Roads, North Sea. Pro­po­sal of Winogradskyella schleiferi sp. nov., Winogradskyella costae sp. nov., Winogradskyella helgolandensis sp. nov., Winogradskyella vidalii sp. nov., Winogradskyella forsetii sp. nov., Winogradskyella ludwigii sp. nov., Winogradskyella ursingii sp. nov., Winogradskyella wichelsiae sp. nov., and Candidatus “Wi­no­gradsky­el­la at­lan­ti­ca” sp. nov. Syst. Appl. Mi­cro­bi­ol. 43:126128. (doi:10.1016/j.syapm.2020.126128)
Alfiansah, Y.R., S. Peters, J. Harder, C. Hassenrück, and A. Gärdes. (2020). Structure and co‑occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white‑leg shrimp Penaeus vannamei aquaculture. Scient. Rep. 10:11980. (doi:10.1038/s41598-020-68891-6)
Assie, A., N. Leisch, V.D.Meier, H. Gruber-Vodicka, H.E. Tegetmeyer, A. Meyerdierks, M. Kleiner, T. Hinzke, S. Joye, M. Saxton, N. Dubilier, J.M. Petersen. (2020). Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria). ISME J. 14:104-22. (doi:10.1038/s41396-019-0508-7)
Avci, B., K. Krüger, B.M. Fuchs, H. Teeling, R.I. Amann. (2020). Po­ly­sac­cha­ri­de ni­che par­ti­tio­n­ing of dis­tinct Polaribacter cla­des du­ring North Sea spring al­gal blooms. ISME J. 14:1369-83. (doi:10.1038/s41396-020-0601-y)
Cho, H., C.Y. Hwang, J.G. Kim, S. Kang, K. Knittel, A. Choi, S.H. Kim, S.K. Rhee, E.Y. Yang, S. Lee, J.-H. Hyun. (2020). A unique benthic microbial community underlying the Phaeocystis antarctica-dominated Amundsen Sea polynya, Antarctica: a proxy for assessing the impact of global changes. Front. Mar. Sci. 6:797. (doi:10.3389/fmars.2019.00797)
Giljan, G., N.A. Kamennaya, A. Otto, D. Becher, A. Ellrott, V. Meyer, B.J. Murton, B.M. Fuchs, R.I. Amann, and M.V. Zubkov. (2020). Bac­terioplank­ton re­veal years-long re­ten­tion of At­lantic deep-ocean wa­ter by the tropic Seamount. Sci­ent. Rep. 10:4715. (doi:10.1038/s41598-020-61417-0)
Grieb, A., T.B. Francis, K. Krüger, L.H. Orellana Retamal, R.I. Amann, and B.M. Fuchs. (2020). Candidatus Ab­di­ti­bac­ter, a no­vel ge­nus wi­t­hin the Cryomorphaceae, thri­ving in the North Sea. Syst. Appl. Mi­cro­bi­ol. 43:126088. (doi:10.1016/j.syapm.2020.126088)
Hahn, C.J., R. Laso-Perez, F. Vulcano, K.-M. Vaziorakis, R. Stokke, I.H. Steen, A. Teske, M. Liebeke, K. Knittel, R. Amann and G. Wegener. (2020). "Candidatus Etha­nope­redens," a ther­mo­phi­lic ge­nus of Archaea me­dia­ting the an­ae­ro­bic oxi­da­ti­on of etha­ne. mBio11:e00600-20. (doi:10.1128/mBio.00600-20)
Hoffmann, K., C. Bienhold, P. Buttigieg, K. Knittel, R. Laso-Pérez, J. Rapp, A. Boetius, and P. Offre. (2020). Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. ISME J. 14:1042-56.(doi:10.1038/s41396-020-0588-4 )
Klein­di­enst, S., and K. Knit­tel. (2020). An­aer­obic hy­dro­car­bon de­grad­ing sulfate-re­du­cing bac­teria at mar­ine gas and oil seeps. In: Mar­ine hy­dro­car­bon seeps. Mi­cro­bi­o­logy and Biogeo­chem­istry of a global mar­ine hab­itat. (eds). A. Teske & V. Carvalho. Springer Ocean­o­graphy series. Springer Nature Switzer­land, chapter 2, pp. 21-42. (doi:10.1007/978-3-030-34827-4_2)
Konstantinidis, K.T., R. Rosselló-Móra, and R. Amann. (2020). Ad­van­ta­ges out­weigh con­cerns about using ge­no­me se­quence as type ma­te­ri­al for pro­ka­ryo­tic ta­xo­no­my. En­vi­ron. Mi­cro­bi­ol. 22:819-22. (doi:10.1111/1462-2920.14934)
Munoz, R., H. Teeling, R. Amann, R. Rosselló-Móra. (2020). An­ce­stry and ad­ap­ti­ve ra­dia­ti­on of Bacteroidetes as as­ses­sed by com­pa­ra­ti­ve ge­no­mics. Syst. Appl. Mi­cro­bi­ol. 43:126065. (doi:10.1016/j.syapm.2020.126065)
Murray, A.E., J. Freudenstein, S. Gribaldo, R. Hatzenpichler, P. Hugenholtz, P.  Kämpfer, K.T. Konstantinidis, C.E. Lane, R.T. Papke, D.H. Parks, R. Rossello-Mora, M.B. Stott, I.C. Sutcliffe, J.C. Thrash, S.N. Venter, W.B. Whitman, S.G. Acinas, R.I. Amann, K. Anantharaman, J. Armengaud, B.J. Baker, R.A. Barco, H.B. Bode, E.S. Boyd, C.L. Brady, P. Carini, P.S.G. Chain, D.R. Colman, K.M. DeAngelis, D. de Los Rios MA, Estrada-de Los Santos P, Dunlap CA, Eisen JA, Emerson D, Ettema TJG, Eveillard, P.R. Girguis, U. Hentschel, J.T. Hollibaugh, L.A. Hug, W.P. Inskeep, E.P. Ivanova, H.P. Klenk, W.J. Li, K.G. Lloyd, F.E. Löffler, T.P. Makhalanyane, D.P. Moser, T. Nunoura, M. Palmer, V. Parro, C. Pedrós-Alió, A.J. Probst, T.H.M. Smits, A.D. Steen, E.T. Steenkamp, A. Spang, F.J. Stewart, J.M. Tiedje, P. Vandamme, M. Wagner, F.P. Wang, P. Yarza, B.P. Hedlund, A.L. Reysenbach. (2020). Road­map for na­ming un­cul­ti­va­ted Ar­chaea and Bac­te­ria. Nat. Mi­cro­bi­ol. 5:987-94. (doi:10.1038/s41564-020-0733-x)
Reintjes, G., B.M. Fuchs, R. Amann, and C. Arnosti. (2020). Ex­ten­si­ve Mi­cro­bi­al Pro­ces­sing of Po­ly­sac­cha­ri­des in the South Pa­ci­fic Gyre via Sel­fish Uptake and Ex­tra­cel­lu­lar Hy­dro­ly­sis. Front. Mi­cro­bi­ol. 11:583158. (doi:10.3389/fmicb.2020.583158)
Reintjes, G., B.M. Fuchs, M. Scharfe, K.H. Wiltshire, R. Amann, C. Arnosti. (2020). Short-term chan­ges in po­ly­sac­cha­ri­de uti­liza­t­i­on me­cha­nisms of ma­ri­ne bac­te­rio­plank­ton du­ring a spring phy­to­plank­ton bloom. bioR­xiv. (doi:10.1101/2020.01.08.899153)
Schultz, D., D. Zühlke, J. Bernhardt, T.B. Francis, D. Albrecht, C. Hirschfeld, S. Markert, and K. Riedel. (2020). An optimized metaproteomics protocol for a holistic taxonomic and functional characterization of microbial communities from marine particles. Environ. Microbiol. Rep. 12:367-76. (doi:10.1111/1758-2229.12842)
van Erk, M.R., D.V. Meier, T. Ferdelman, J. Harder, I. Bussmann, and D. de Beer. (2020). Kelp deposition changes mineralization pathways and microbial communities in a sandy beach. Limnol. Oceanogr. 65:3066-84. (doi:10.1002/lno.11574)
Viver, T., R.E. Conrad, L.H. Orellana, M. Urdiain, J.E. González-Pastor, J.K. Hatt, R. Amann, J. Antón, K.T. Konstantinidis, and R. Rosselló-Móra. (2020). Dis­tinct eco­ty­pes wi­t­hin a na­tu­ral ha­lo­ar­chae­al po­pu­la­ti­on enable ad­ap­ta­ti­on to chan­ging en­vi­ron­men­tal con­di­ti­ons wi­thout cau­sing po­pu­la­ti­on sweeps. ISME J. On­line ahead of print. (doi:10.1038/s41396-020-00842-5)
Wegener, G., K. Knittel, G. Bohrmann, and F. Schubotz. (2020). Benthic deep-sea life associated with asphaltic hydrocarbon emissions in the Southern Gulf of Mexico. In: Marine hydrocarbon seeps. Microbiology and Biogeochemistry of a global marine habitat. (eds). A. Teske & V. Carvalho. Springer Oceanography series. Springer Nature Switzerland, chapter 5, pp. 101-124. (doi:10.1007/978-3-030-34827-4_5)
Wiegand, S., M. Jogler, C. Boedeker, D. Pinto, J. Vollmers, E. Rivas-Marín, T. Kohn, S.H. Peeters, A. Heuer, P. Rast, S. Oberbeckmann, B. Bunk, O. Jeske, A. Meyerdierks, J. E. Storesund, N. Kallscheuer, S. Lücker, O.M. Lage, T. Pohl, B.J. Merkel, P. Hornburger, R.-W. Müller, F. Brümmer, M. Labrenz, A.M. Spormann, H.J.M. Op den Camp, J. Overmann, R. Amann, M.S.M. Jetten, T. Mascher, M.H. Medema, D.P. Devos, A.-K. Kaster, L. Øvreås, M. Rohde, M.Y. Galperin, C. Jogler. (2020). Cul­ti­va­ti­on and func­tio­nal cha­rac­te­riza­t­i­on of 79 Planctomycetes un­co­vers their uni­que bio­lo­gy. Na­tu­re Mi­cro­bi­ol. 5:126-40. (doi:10.1038/s41564-019-0588-1)


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