Publications 2016

Amann, R., and R. Rossello-Mora (2016). After all, only millions? mBio 7:e00999-16. (doi:10.1128/mBio.00999-16).
Barbeyron, T., F. Thomas, V. Barbe, H. Teeling, C. Schenowitz, C. Dossat, A. Goesmann, C. Leblanc, F.O. Glöckner, M. Czjzek, R. Amann, and G. Michel (2016). Habitat und taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans DsijT. Environ. Microbiol. 18:4610-4627. (doi:10.1111/1462-2920.13584).
Bennke, C.M., G. Reintjes, M. Schattenhofer, A. Ellrott, J. Wulf, M. Zeder, and B.M. Fuchs (2016). Modification of a high-throughput automatic microbial cell enumeration system for shipboard analyses. Environ. Microbiol. 82:3289-3296. (doi:10.1128/AEM.03931-15).
Bennke, C.M., K. Krüger, L. Kappelmann, S. Huang, A. Gobet, M. Schüler, V. Barbe, B.M. Fuchs, G. Michel, H. Teeling, and R.I. Amann (2016). Polysaccharide utilization loci of Bacteroidetes from two contrasting open ocea sites in the North Atlantic. Environ. Microbiol. 18:4456-4470. (doi:10.1111/1462-2920.13429).
Berg, J.S., D. Michellod, P. Pjevac, C. Martinez-Perez, C.R.T. Buckner, P.F. Hach, C.J. Schubert, J. Milucka, and M.M.M. Kuypers (2016). Intense cryptic microbial iron cycling in the low iron water column of the meromictic Lake Cadagno. Environ. Microbiol. 18:5288-5302. (doi:10.1111/1462-2920.13587).
Bruder, L.M., M. Dörkes, B.M. Fuchs, W. Ludwig, and W. Liebl (2016). Flow cytometric sorting of fecal bacteria after in situ hybridization with polynucleotide probes. Syst. Appl. Microbiol. 39:464-475. (doi:10.1016/j.syapm.2016.08.005).
Dyksma, S., K. Bischof, B.M. Fuchs, K. Hoffmann, D. Meier, A. Meyerdierks, P. Pjevac, D. Probandt, M. Richter, R. Stepanauskas, and M. Mussmann (2016). Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. ISME J. 10:1939-1953. (doi:10.1038/ismej.2015.257).
Flood, B.E., P. Fliss, D.S. Jones, G.J. Dick, S. Jain, A.-K. Kaster, M. Winkel, M. Mussmann, and J. Bailey (2016). Single-cell (meta-)genomics of a dimorphic Candidatus Thiomargarita nelsonii reveals genomic plasticity. Front. Microbiol. 7:e603. (doi:10.3389/fmicb.2016.00603).
Krukenberg, V., K. Harding, M. Richter, F.O. Glöckner, H.R. Gruber-Vodicka, B. Adam, J.S. Berg, K. Knittel, H.E. Tegetmeyer, A. Boetius, and G. Wegener (2016). Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane. Environ. Microbiol. 18:3073-3091. (doi:10.1111/1462-2920.13283).
Laso-Perez, R., G. Wegener, K. Knittel, F. Widdel, K.J. Harding, V. Krukenberg, D.V. Meier, M. Richter, H.E. Tegetmeyer, D. Riedel, H.H. Richnow, L. Adrian, T. Reemtsma, O.J. Lechtenfeld, and F. Musat (2016). Thermophilic archaea activate butan via alkyl-coenzyme M formation. Nature 539:396-401. (doi:10.1038/nature20152).
Martinez-Perez, C., W. Mohr, C.R. Löscher, J. Dekaezemacker, S. Littmann, P. Yilmaz, N. Lehnen, B.M. Fuchs, G. Lavik, R.A. Schmitz, J. LaRoche, and M.M.M. Kuypers (2016). The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle. Nature Microbiol. 1:16163. (doi:10.1038/nmicrobiol.2016.163).
Meier, D., W. Bach, P.R. Girguis, H. Gruber-Vodicka, E.P. Reeves, M. Richter, C. Vidoudez, R. Amann, and A. Meyerdierks (2016). Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting. Environ. Microbiol. 18:4348-4368. (doi:10.1111/1462-2920.13304). 
Munoz, R., R. Rossello-Mora, and R. Amann (2016). Revised phylogeny of Bacteroidetes and proposal of sixteen new taxa and two new combinations including Rhodothermaeota phyl. nov. System. Appl. Microbiol. 39:281-296. (doi:10.1016/j.syapm.2016.04.004).
Panschin, I., M. Becher, S. Verbarg, C. Spöer, M. Rohde, M. Schüler, R.I. Amann, J. Harder, B.J. Tindall, and R. Hahnke (2016). Description of Gramella forsetii sp.nov., a marine Flavobacteriaceae isolated from North Sea water, and emended description of Gramella gaetbulicola Cho et al. 2011. Int. J. System. Evol. Microbiol. D-16-00552R2. (doi:10.1099/ijsem.0.001700).
Pizzetti, I., F. Schulz, T. Tyml, B.M. Fuchs, R. Amann, M. Horn, and S. Fazi (2016). Chlamydial seasonal dynamics and isolation of ‘Candidatus Neptunochlamydia vexilliferae’ from a Tyrrhenian coastal lake. Environ. Microbiol. 18:2405-2417. (doi:10.1111/1462-2920.13111). 
Pizzetti, I., G. Lupini, F.B. Aubry, F. Acri, B.M. Fuchs, and S. Fazi (2016). Influence of Po River runoff on the bacterioplankton community along trophic and salinity gradients in the Northern Adreatic Sea. Mar. Ecol. 37:1386-1397. (doi:10.1111/maec.12355).
Raupach, M.J., R. Amann, Q.D. Wheeler, and C. Roos (2016). The application of “-omics” technologies for the classification and identification of animals. Org. Divers. Evol. 16:1-12. (doi:10.1007/s13127-015-0234-6).
Ruff, S.E., H. Kuhfuß, G. Wegener, C. Lott, A. Ramette, J. Wiedling, K. Knittel, and M. Weber (2016). Methane seep in shallow-water permeable sediment harbors high diversity of anaerobic methanotrophic communities, Elba, Italy. Front. Microbiol. 7:374. (doi:10.3389/fmicb.2016.00374).
Schimak, M.P., M. Kleiner, S. Wetzel, M. Liebeke, N. Dubilier, and B.M. Fuchs (2016). MiL-FISH: Multilabeled oligonucleotides for fluorescence in situ hybridization improve visualization of bacterial cells. Environ. Microbiol. 82:62-70. (doi:10.1128/AEM.02776-15).
Stagars, M., E. Ruff, R. Amann, and K. Knittel (2016). High diversity of anaerobic alkane-degrading microbial communities in marine seep sediments based on (1-methylalkyl)succinate synthase genes. Frontiers Microbiol. 6:1511. (doi:10.3389/fmicb.2015.01511).
Teeling, H., B.M. Fuchs, C.M. Bennke, K. Krüger, M. Chafee, L. Kappelmann, G. Reintjes, J. Waldmann, C. Quast, F.O. Glöckner, J. Lucas, A. Wichels, G. Gerdts, K.H. Wiltshire, and R.I. Amann (2016). Recurring patterns in bacterioplankton dynamics during coastal spring algae blooms. eLife 5:e11888. (doi:10.7554/eLife.11888).
Wegener, G., V. Krukenberg, S.E. Ruff, M.Y. Kellermann, and K. Knittel (2016). Metabolic capabilities of microorganisms involved in and associated with the anaerobic oxidation of methane. Front. Microbiol. 7:e46. (doi:10.3389/fmicb.2016.00046). 
Winkel, M., V. Carvalho, T. Woyke, M. Richter, H.N. Schulz-Vogt, B. Flood, J. Bailey, and M. Mussmann (2016). Single-cell sequencing of Thiomargarita reveals genomic flexibility for adaptation to dynamic redox conditions. Front. Microbiol. 7:e964. (doi:10.3389/fmicb.2016.00964).


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