Publications 2013

Allers E., Moraru C., Duhaime M.B., Beneze E., Solonenko N., Barrero Canosa J., Amann R., and Sullivan M.B. (2013). Single-cell and population level viral infection dynamics revealed by phageFISH, a method to visualize intracellular and free viruses. Environ. Microbiol. 15:2306-2318. [PMID:23489642]

Bennke C.M., Neu T. R., Fuchs B.M., and Amann R. (2013). Mapping glycoconjugate-mediated interactions of marine Bacteroidetes with diatoms. Syst. Appl. Microbiol. 36:417–425. [PMID:23809997]

Golyshin P.N., Werner J., Chernikova T.N., Tran H., Ferrer M., Yakimov M.M., Teeling H., Golyshina O.V. (2013) Genome sequence of Thalassolituus oleivorans MIL-1 (DSM 14913T). Genome Announc. 1:e0014113. [PMID:23599290]

Gomez-Pereira P.R., Hartmann M., Grob C., Tarran G.A., Martin A.P., Fuchs B.M., Scanlan D.J., and Zubkov M.V. (2013a). Comparable light stimulation of organic nutrient uptake by SAR11 and Prochlorococcus in the North Atlantic subtropical gyre. ISME J. 7:603-614. [PMID:23096403]

Gomez-Pereira P.R., Kennaway G., Fuchs B.M., Tarran G.A., and Zubkov M.V. (2013b). Flow cytometric identification of Mamiellales clade II in the Southern Atlantic Ocean. FEMS Microbiol. Ecol. 83:664-671. [PMID:23035812]

Hahnke R.L., Probian C., Fuchs B.M., and Harder J. (2013). Variations in pelagic bacterial communities in the North Atlantic Ocean coincide with water bodies. Aquat. Microb. Ecol. 71:131-140. [ame page]

Kolinko S., Wanner G., Katzmann E., Kiemer F., Fuchs B.M., and Schüler D. (2013). Clone libraries and single cell genome amplification reveal extended diversity of uncultivated magnetotactic bacteria from marine and freshwater environments. Env. Microbiol. 15:1290-1301. [PMID:23106823]

Krupke A., Musat N., LaRoche J., Mohr W., Fuchs B.M., Amann R.I.,Kuypers M.M.M., and Foster R.A. (2013). In situ identification and N2 and C fixation rates of uncultivated cyanobacteria populations. Syst. Appl. Microbiol. 36:259–271. [PMID:23541027]

Maignien L., Parkes R., Cragg B., Niemann H., Knittel K., Coulon S., Akhmetzhanov A., Boon N. (2013). Anaerobic oxidation of methane in hypersaline cold seep sediments. FEMS Microbiol Ecol. 83:214-231. [PMID:22882187]

Mann A.J., Hahnke R.L., Huang S., Werner J., Xing P., Barbeyron T., Hüttel B., Stüber K., Reinhardt R., Harder J., Glöckner F.O., Amann, R.I., and Teeling H. (2013). The genome of the algae-associated marine flavobacterium Formosa agariphila KMM 3901T reveals a broad potential for the degradation of algal polysaccharides. Appl. Environ. Microbiol. 79:6813-6822. [PMID:23995932]

Mußmann M., Augspurger C., Karwautz C., Ribot M.-R., Winkel M., Battin T., and Daims H. (2013). Colonization of freshwater biofilms by nitrifying bacteria from activated sludges. FEMS Microbiol. Ecol. 85:104-15. [PMID:23461285]

Niemann H., Linke P., Knittel K., MacPherson E., Boetius A., Bruckmann W., Lavik G., Wallmann K., Schacht U., Omoregie E., Hilton D., Brown K., and Rehder G. (2013). Methane-carbon flow into the benthic food web at cold seeps - a case study from the Costa Rica subduction zone. PLOS ONE 8:e74894. [PMID:24116017]

Price R.E., Lesniewski R., Nitzsche K., Meyerdierks A., Saltikov C., Pichler T., and Amend, J.P. (2013). Archaeal and bacterial diversity in an arsenic-rich shallow-sea hydrothermal system undergoing phase separation. Front. Ext. Microbiol. 4:158. [PMID:23847597]

Ruff S.E., Arnds J., Knittel K., Amann R., Wegener G, Ramette A, Boetius, A (2013). Microbial Communities of Deep-Sea Methane Seeps at Hikurangi Continental Margin (New Zealand). PLoS ONE 8:e72627. [PMID:24098632]

Spring S., Riedel T., Spröer C., Yan S., Harder J., and Fuchs B.M. (2013). Taxonomy and evolution of bacteriochlorophyll a-containing members of the OM60/NOR5 clade of marine gammaproteobacteria: description of Luminiphilus syltensis gen. nov., sp. nov., reclassification of Haliea rubra as Pseudohaliea rubra gen. nov., comb. nov., and emendation of Chromatocurvus halotolerans. BMC Microbiol. 13:118. [PMID:23705883]

van de Vossenberg J., Woebken D., Maalcke W.J., Wessels H.J.C.T., Dutilh B.E., Kartal B., Janssen-Megens E.M., Roeselers G., Yan J., Speth D., Gloerich J., Geerts W., van der Biezen E., Pluk W., Francoijs K.-J., Russ L., Lam P., Malfatti S.A., Tringe S.G., Haaijer S.C.M., op den Camp H.J.M., Stunnenberg H.G., Amann R., Kuypers M., and Jetten M.S.M. (2013). The metagenome of the marine anammox bacterium Candidatus Scalindua profunda illustrates the versatility of this globally important nitrogen cycle bacterium. Environ. Microbiol. 15:1275-1289. [PMID:22568606]

Finster K.W., Kjeldsen K., Kube M., Reinhardt R., Mußmann M., Amann R., and Schreiber L. (2013). Complete genome sequence of Desulfocapsa sulfexigens, a marine δ-proteobacterium specialized in disproportionating inorganic sulfur compounds. Standards in Genomic Sciences 8:58-68. [sigs page]

von Netzer F., Pilloni G., Kleindienst S., Krüger, M., Knittel K., Gründger F., and Lueders T. (2013). Enhanced gene detection assays for fumarate-adding enzymes allow uncovering anaerobic hydrocarbon degraders in terrestrial and marine systems. Appl. Environ. Microbiol. 79:543-552. [PMID:23124238]

Wöhlbrand L., Jacob J., Kube M., Mußmann M., Jarling R., Beck A., Amann R., Wilkes H., Reinhardt R., and Rabus R. (2013). Complete genome and catabolic sub-proteomes of Desulfobacula toluolica Tol2, a marine aromatic compound-degrading sulfate reducer. Environ. Microbiol. 15:1334-55. [PMID:23088741]