Oxygen is not the limit: Diversity and metabolic potential of globally distributed endosymbionts

In 2021, scientists at the Max Planck Institute for Marine Microbiology in Bremen, Germany, reported an astonishing new form of symbiosis: They found a unique bacterium that lives inside a ciliate – a unicellular eukaryote – and provides it with energy. The symbiont’s role is thus strongly reminiscent of mitochondria, with the key difference that the endosymbiont derives energy from the respiration of nitrate, not oxygen.

Now the researchers from Bremen set out to learn more about the environmental distribution and diversity of these peculiar symbionts. “After our initial discovery of this symbiont in a freshwater lake, we wondered how common these organisms are in nature”, says Jana Milucka from the Max Planck Institute for Marine Microbiology. “Are they extremely rare and therefore eluded detection so long? Or do they exist elsewhere and if so, what are their metabolic capacities?”

A global inhabitant

The scientists set out to look for molecular signatures of the symbiont in huge public sequencing databases, which contain vast amounts of genetic data from all kinds of environmental samples. And indeed, they detected these symbionts in about 1000 different datasets. “. We were surprised how ubiquitous they are. We could find them on every inhabited continent”, says Milucka. “Moreover, we learned that they can live not only in lakes and other freshwater habitats but also in groundwater and even wastewater.”

The scientists discovered not only the original symbiont in these datasets, but also some new close relatives. “We ended up identifying four new species, two of which actually constituted a new genus. Because this new genus of symbionts likely has a similar role as the originally discovered Azoamicus (name meaning “nitrogen friend”), we named the new genus Azosocius ("nitrogen associate”), explains first-author Daan Speth. “Lucky for us, one of the new Azosocius species was retrieved not too far from Bremen, from a groundwater sample in Hainich, Germany.”

Now the scientists wanted to dig deeper into the life of these new species. Thanks to a collaboration with Kirsten Küsel and Will Overholt from the Friedrich Schiller University in Jena, Germany, who initially collected the Hainich samples, they were able to access the sampling site and look into metatranscriptomic data, i.e. data describing the gene expression in the sample and indicating microbial activity. “Here, we were in for another surprise – these respiratory symbionts can do new tricks”, Speth continues. Unlike the original symbiont species, which can only perform anaerobic respiration (i.e. denitrification), all new symbiont species actually encode a terminal oxidase – an enzyme that enables them to also respire oxygen in addition to nitrogen. “This can explain why we find these symbionts also in environments that are fully or partially oxic.”