2011

Abed, R. M. M., Musat, F. Musat, and M. Mussmann (2011), Structure of microbial communities and hydrocarbon-dependent sulfate reduction in the anoxic layer of a polluted microbial mat, Marine Pollution Bulletin, 62, 539–546, doi:10.1016/j.marpolbul.2010.11.030

Bera, P., J. Kumar, and Khalili (2011), Hot springs mediate spatial exchange of heat and mass in the enclosed sediment domain: A stability perspective, Advances in Water Resources, 34, 817–828, doi:10.1016/j.advwatres.2011.02.003.

Dunker, R., Roy, A. Kamp, and B. B. Jørgensen (2011), Motility patterns of filamentous sulfur bacteria, Beggiatoa spp., FEMS Microbiology Ecology, 77, 176–185, doi:10.1111/j.1574-6941.2011.01099.x.

Eckert, T., Brunner, E. A. Edwards, and U. G. Wortmann (2011), Microbially mediated re-oxidation of sulfide during dissimilatory sulfate reduction by Desulfobacter latus, Geochimica et Cosmochimica Acta, 75, 3469 – 3485, doi:10.1016/j.gca.2011.03.034.

Enge, A. J., H. Nomaki, N. O. Ogawa, U. Witte, M. M. Moeseneder, G. Lavik, N. Ohkouchi, H. Kitazato, M. Kucera, and P. Heinz (2011), Response of the benthic foraminiferal community to a simulated short-term phytodetritus pulse in the abyssal North Pacific, Marine Ecology-Progress Series, 438, 129–142, doi:10.3354/meps09298

Foster, R. A., M. M. M. Kuypers, T. Vagner, R. W. Paerl, Musat, and J. P. Zehr (2011), Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses, The ISME Journal, 5(9), 1484–1493, doi:10.1038/ismej.2011.26.

Goldhammer, T., B. Brunner, S. M. Bernasconi, T. G. Ferdelman, and M. Zabel (2011), Phosphate oxygen isotopes: Insights into sedimentary phosphorus cycling from the Benguela upwelling system, Geochimica et Cosmochimica Acta, 75, 3741 – 3756, doi:DOI: 10.1016/j.gca.2011.04.006

Goldhammer, T., T. Max, Brunner, F. Einsiedl, and M. Zabel (2011), Marine sediment pore-water profiles of phosphate d18O using a refined micro-extraction, Limnology and Oceanography: Methods, 9, 110–120, doi:10:4319/lom.2011.9.110.

Henkel, S., M. Strasser, T. Schwenk, T. Hanebuth, J. Hüsener, G. L. Arnold, D. Winkelmann, M. Formolo, J. Tomasini, S. Krastel, and S. Kasten (2011), An interdisciplinary investigation of a recent submarine mass transport deposit at the continental margin off Uruguay, Geochemistry Geophysics Geosystems, 12, Q08009, doi:0.1029/2011GC003669

Holler, T., G. Wegener, H. Niemann, C. Deusner, T. G. Ferdelman, A. Boetius, B. Brunner, and F. Widdel (2011), Carbon and sulfur back flux during anaerobic microbial oxidation of methane and coupled sulfate reduction, Proceedings of the National Academy of Sciences of the United States of America, 108, E1484–E1490, doi:10.1073/pnas.1106032108

Holmkvist, L., T. G. Ferdelman, and B. B. Jørgensen (2011), A cryptic sulfur cycle driven by iron in the methane zone of marine sediment (Aarhus Bay, Denmark), Geochimica et Cosmochimica Acta, 75(12), 3581–3599, doi:10.1016/j.gca.2011.03.033

Holmkvist, L., Kamyshny, C. Vogt, K. Vamvakopoulos, T. G. Ferdelman, and B. B. Jørgensen (2011), Sulfate reduction below the sulfate-methane transition in Black Sea sediments, Deep-Sea Reasearch Part I-Oceanographic Research Papers, 58, 493–504, doi:10.1016/j.dsr.2011.02.009.

Holtappels, M., M. M. M. Kuypers, M. Schlueter, and V. Bruchert (2011), Measurement and interpretation of solute concentration gradients in the benthic boundary layer, Limnology and Oceanography: Methods, 9, 1–13, doi:10.4319/lom.2011.9.1.

Holtappels, M., G. Lavik, M. M. Jensen, and M. M. Kuypers (2011), (15)N-Labeling experiments to dissect the contributions of heterotrophic denitrification and anammox to nitrogen removal in the OMZ waters of the ocean, in Methods in Enzymology: Research on Nitrification and Related Processes, Part A, vol. 486, edited by M. G. Klotz, pp. 223–251.

Hoshino, T., Y. Morono, T. Terada, H. Imachi, G. Ferdelman, and F. Inagaki (2011), Comparative study of subseafloor microbial community structures in deeply buried coral fossils and sediment matrices from the Challenger Mound in the Porcupine Seabight, Frontiers in Microbiology, 2, doi:10.3389/fmicb.2011.00231.

Jensen, M. M., Lam, N. P. Revsbech, B. Nagel, B. Gaye, M. S. M. Jetten, and M. M. M. Kuypers (2011), Intensive nitrogen loss over the Omani Shelf due to anammox coupled with dissimilatory nitrite reduction to ammonium, The ISME Journal, 5, 1660–1670, doi:10.1038/ismej.2011.44.

Kalvelage,, T., M. M. Jensen, S. Contreras, N. P. Revsbech, P. Lam, M. Günter,, J. LaRoche, G. Lavik, and M. M. M. Kuypers, (2011), Oxygen Sensitivity of Anammox and Coupled N-Cycle Processes in Oxygen Minimum Zones, PLoS ONE, 6, e29299, doi:10.1371/journal.pone.0029299

Kamp, A., D. de Beer, J. L. Nitsch, Lavik, and P. Stief (2011), Diatoms respire nitrate to survive dark and anoxic conditions, Proceedings of the National Academy of Sciences of the United States of America, 108, 5649–5654, doi:10.1073/pnas.1015744108.

Kamyshny Jr, A., A. L. Zerkle, Z. F. Mansaray, I. Ciglenečki, E. Bura-Nakić, J. Farquhar, and G. Ferdelman (2011), Biogeochemical sulfur cycling in the water column of a shallow stratified sea-water lake: Speciation and quadruple sulfur isotope composition, Marine Chemistry, 127, 144 – 154, doi:10.1016/j.marchem.2011.09.001.

Kamyshny Jr., A., E. V. Yakushev, G. Jost, and O. I. Podymov (2011), Role of sulfide oxidation intermediates in the redox balance of the oxic–anoxic interface of the Gotland Deep, Baltic Sea, in The Handbook of Environmental Chemistry, edited by E. V. Yakushev, pp. 1–25, Springer-Verlag Berlin Heidelberg

Lam, P., M. Jensen, A. Kock, K. A. Lettmann, Y. Plancherel, G. Lavik, H. W. Bange, and M. M. M. Kuypers (2011), Origin and fate of the secondary nitrite maximum in the Arabian Sea, Biogeosciences, 8(6), 1565–1577, doi:10.5194/bg-8-1565-2011.

Lam, P., and M. M. M. Kuypers (2011), Microbial Nitrogen Cycling Processes in Oxygen Minimum Zones, in ANNUAL REVIEW OF MARINE SCIENCE, VOL 3, vol. 3, edited by C. Carlson and S. Giovannoni, pp. 317–345.

Lenk, S., J. Arnds, K. Zerjatke, N. Musat, R. Amann, and M. Mussmann (2011), Novel groups of Gammaproteobacteria catalyse sulfur oxidation and carbon fixation in a coastal, intertidal sediment, Environmental Microbiology, 13(3), 758–774, doi:10.1111/j.1462-2920.2010.02380.

Lindtke, J., S. B. Ziegenbalg, Brunner, J. M. Rouchy, C. Pierre, and J. Peckmann (2011), Authigenesis of native sulphur and dolomite in a lacustrine evaporitic setting (Hellin basin, Late Miocene, SE Spain), Geological Magazine, 148, 665–669, doi:10.1017/S0016756811000124.

Meister, P., Gutjahr, M. Frank, S. M. Bernasconi, C. Vasconcelos, and J. A. McKenzie (2011), Dolomite formation within the methanogenic zone induced by tectonically driven fluids in the Peru accretionary prism, Geology, 39, 563–566, doi:10.1130/G31810.1.

Meister, P., O. Johnson, F. Corsetti, and K. H. Nealson (2011), Magnesium inhibition controls spherical carbonate precipitation in ultrabasic springwater (Cedars, California) and culture experiments, Lecture Notes in Earth Sciences, 131, 101–121.

Meister, P., C. Reyes, W. Beaumont, M. Rincon, L. Colooins, W. M. Berelson, L. Stott, F. Corsetti, and K. H. Nealson (2011c), Calcium and magnesium-limited dolomite precipitation at Deep Springs Lake, California, Sedimentology, 58, 1810–1830, doi:10.1111/j.1365-3091.2011.01240.x.

Musat, N., B. Adam, and M. M. M. Kuypers (2011), Nano-Secondary Ion Mass Spectrometry (nanoSIMS) Coupled with in situ Hybridization for Ecological Research, in Stable Isotope Probing and Related Technologies, edited by J. C. Murrell and A. S. Whiteley, pp. 295–303, Amer Soc Microbiology.

Oduro, H., J. Kamyshny, W. Guo, and J. Farquhar (2011), Multiple sulfur isotope analysis of volatile organic sulfur compounds and their sulfonium precursors in coastal marine environments, Marine Chemistry, 124, 78–89, doi:10.1016/j.marchem.2010.12.004

Picard, A., Daniel, D. Testemale, I. Kieffer, P. Bleuet, H. Cardon, and P. M. Oger (2011), Monitoring microbial redox transformations of metal and metalloid elements under high pressure using in situ X-ray absorption spectroscopy, Geobiology, 9, 196–204, doi:10.1111/j.1472-4669.2010.00270.x.

Picard, A., and T. G. Ferdelman (2011), Linking microbial heterotrophic activity and sediment lithology in oxic, oligotrophic subseafloor sediments of the North Atlantic Ocean, Frontiers in Microbiology, 2, doi:10.3389/fmicb.2011.00263.

Ploug, H., Adam, N. Musat, T. Kalvelage, G. Lavik, D. Wolf-Gladrow, and M. M. M. Kuypers (2011), Carbon, nitrogen and O(2) fluxes associated with the cyanobacterium Nodularia spumigena in the Baltic Sea, The ISME Journal, 5, 1549–1558, doi:10.1038/ismej.2011.20.

Van Rooij D., Blamart D., De Mol L., Mienis F., Pirlet H., Wehrmann L.M., Barbieri R., Maignien L., Templer S.P., de Haas H., Hebbeln D., Frank N., Larmagnat S., Stadnitskaia A., Stivaletta N., van Weering T., Zhang Y., Hamoumi N., Cnudde V., Duyck P., Henriet J.-P. & the MiCROSYSTEMS MD 169 shipboard party (2011), Cold-water coral mounds on the Pen Duick Escarpment, Gulf of Cadiz: The MICROSYSTEMS project approach, Marine Geology, 282(1-2, SI), 102–117, doi:10.1016/j.margeo.2010.08.012.

Templer, S. P., L. M. Wehrmann, Y. Zhang, C. Vasconcelos, and J. A. McKenzie (2011), Microbial community composition and biogeochemical processes in cold-water coral carbonate mounds in the Gulf of Cadiz, on the Moroccan margin, Marine Geology, 282(1-2, SI), 138–148, doi:10.1016/j.margeo.2010.10.020.

Tourna, M., M. Stieglmeier, A. Spang, M. Könneke, A. Schintlmeister, T. Urich, M. Engel, M. Schloter, M. Wagner, A. Richter, C. Schleper (2011), Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil, Proceedings of the National Academy of Sciences of the United States of America, 108, 8420–8425, doi:10.1073/pnas.1013488108

Webster, G., H. Sass, B. A. Cragg, R. Gorra, J. Knab, C. J. Green, F. Mathes, J. C. Fry, A. J. Weightman, and R. J. Parkes (2011), Enrichment and cultivation of prokaryotes associated with the sulphate-methane transition zone of diffusion-controlled sediments of Aarhus Bay, Denmark, under heterotrophic conditions, FEMS Microbiology Ecology, 77, 248–263, doi:10.1111/j.1574-6941.2011.01109.x.

Wehrmann L.M., N. Risgaard-Petersen, H.N. Schrum, E. Walsh, Y. Huh, M. Ikehara, C. Pierre, S. D'Hondt, T.G. Ferdelman, A.C. Ravelo, K. Takahashi, C. Alvarez Zarikian and the Integrated Ocean Drilling Program Expedition 323 Scientific Party (2011), Coupled organic and inorganic carbon cycling in the deep subseafloor sediment of the northeastern Bering Sea Slope (IODP Exp. 323), Chemical Geology, 284(3-4), 251–261, doi:10.1016/j.chemgeo.2011.03.002

Wehrmann, L. M., S. P. Templer, Benjamin Brunner, S. M. Bernasconi, L. Maignien, and G. Ferdelman (2011b), The imprint of methane seepage on the geochemical record and early diagenetic processes in cold-water coral mounds on Pen Duick Escarpment, Gulf of Cadiz, Marine Geology, 282(1-2, SI), 118–137, doi:10.1016/j.margeo.2010.08.005.