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Publikationen 2010
Publikationen 2010
Department of Biogeochemistry
| Al-Najjar, M., D. de Beer, B. B. Jørgensen, M. Kühl & L. Polerecky: Conversion and Conservation of Light Energy in a Photosynthetic Microbial mat. In: ISME Journal 4, pp. 440-449 (2010). PubMed Full Text |
| Baune, C, M.E. Böttcher: Experimental Investigation of Sulphur Isotope Partitioning during Outgassing of Hydrogen Sulphide from Diluted Aqueous Solutions and Seawater. In: Isotopes in Environmental and Health Studies 46(4), pp. 444–453 (2010). PubMed |
| Beck M., Riedel T., Graue T., Köster J., Kowalski N., Wu C.S., Wegener G., Lipsevers Y., Freund H., Böttcher M.E., Brumsack H.-J., Cypionka H., Rullkötter J. & Engelen B: Paleo-Environmental Imprints on Microbiology and Biogeochemistry in Coastal Quaternary Sediments. In: Biogeosciences Discuss. 7, pp. 5463-5496 (2010). ResearchGate Full Text |
| Bohrmann, G and B. B. Jørgensen: Contributions from the 9th International Conference on Gas in Marine Sediments, University of Bremen, 15-19 September 2008, In: Geo-Marine Letters 30, pp. 151-155 (2010). Springer |
| D′Andrilli. J, T. Dittmar, BP. Koch, JM. Purcell, Marshall AG and Cooper WT: Comprehensive Characterization of Marine Dissolved Organic Matter by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry with Electrospray and Atmospheric Pressure Photoionization. In: Rapid Communication in Mass Spectrometry 24, pp. 643-650 (2010). PubMed |
| Deusner, C.V. Meyer, T.G. Ferdelman: High-Pressure Systems for Gas-Phase Free Continuous Incubation of Enriched Marine Microbial Communities Performing Anaerobic Oxidation of Methane. In: Biotechnology and Bioengineering 105(3), pp. 524-33. doi: 10.1002/bit.22553 (2010). PubMed |
| Dunker, R., H. Røy, A. Kamp and B. B. Jørgensen: Temperature Regulation of Gliding Motility in Filamentous Sulfur Bacteria, Beggiatoa spp. In: FEMS Microbiology Ecology 73, pp. 234-242 (2010). PubMed |
| Evrard1, V, K. Soetaert1, C.H.R. Heip, M. Huettel, M.A. Xenopoulos and J. J. Middelburg: Carbon and Nitrogen Flows through the Benthic Food Web of a Photic Subtidal Sandy Sediment In: Marine Ecology Progress Series 416, pp. 1–16. doi: 10.3354/meps08770 (2010). MEPS Full Text |
| Formolo, M.J: The Microbial Production of Methane and other Volatile Hydrocarbons. In: Handbook of Hydrocarbon and Lipid Microbiology, Vol. 4, pp. 113-126. Springer-Verlag Berlin, Timmis K.N. (ed.) (2010). Springer |
| Gittel. A., M. Seidel, J. Kuever, A. S. Galushko, H. Cypionka and M. Könneke: Desulfopila Inferna sp. Nov. : A Sulfate-Reducing Bacterium Isolated from the Subsurface of A Tidal Sandflat. In: International Journal of Systematic and Evolutionary Microbiology 60, pp. 1626-1630. doi: 10.1099/ijs.0.015644-0 (2010). PubMed Full Text |
| Goldhammer,T, V. Brüchert, T.G. Ferdelman and M. Zabel: Microbial Sequestration of Phosphorus in Anoxic Upwelling Sediments. In: Nature Geoscience, 3, pp. 557 – 556. doi: 10.1038/NGEO913 (2010). Nature |
| Holmkvist, L., E. T. Arning, K. Küster, V. Vandieken, J. Peckmann, M. Zabel and B. B. Jørgensen: Phosphate Geochemistry, Mineralization Processes, and Thioploca Distribution in Shelf Sediments of Central Chile. In: Marine Geology 277, pp. 61-72 (2010). ScienceDirect |
| Hubert C: Microbial Ecology of Oil Reservoir Souring Control by Nitrate Injection. In: Handbook of Hydrocarbon and Lipid Microbiology, Vol. 4, pp. 2753-2766. Springer-Verlag Berlin, Heidelberg, Timmis K.N. (ed.), (2010). Springer |
| Hubert C. and A. Judd: Using Microorganisms as Prospecting Agents in Oil and Gas Exploration. In: Handbook of Hydrocarbon and Lipid Microbiology, Vol. 4, Chapter 23, pp 2713- 2725. Springer-Verlag Berlin, Heidelberg, Timmis K.N. (ed.), (2010). Springer |
| Hubert C, C. Arnosti, V. Brüchert, A. Loy, V. Vandieken and B.B. Jørgensen: Thermophilic Anaerobes in Arctic Marine Sediments Induced to Mineralize Complex Organic Matter at High Temperature. In: Environmental Microbiology 12, pp. 1089-1104 (2010).PubMed |
| Jørgensen, B. B: Big Sulfur Bacteria. In: ISME Journal 4, pp. 1083-1084 (2010). PubMed Full Text |
| Jørgensen, B.B: Methane in the Oceans: A New Energy Resource, or a Concern for the Environment. In: Aus den Elfenbeintürmen der Wissenschaft 3, pp. 97-106. Wallstein Verlag, Göttingen, E. Neher (ed.), (2010). |
| Jørgensen, B.B. and R.J. Parkes: Role of Sulfate Reduction and Methane Production by Organic Carbon Degradation in Eutrophic Fjord Sediments. In: Limnology and Oceanography 55 (Limfjorden, Denmark), pp.1338-1352 (2010). ResearchGate |
| Jørgensen, B.B., R. Dunker, S. Grünke and H. Røy: Filamentous Sulfur Bacteria, Beggiatoa spp. in Arctic Marine Sediments (Svalbard, 79°N). In: FEMS Microbiology Ecology 73, pp. 500-513 (2010). PubMed |
| Kamyshny, A: Solubility of Cycloctasulfur in Water as a Function of Temperature, Salinity and Sulfide Concentration.Goldschmidt Conference Abstracts A493 (2010). Goldschmidt Full Text |
| Kamyshny Jr. A. and T.GFerdelman: Dynamics of Zero-Valent Sulfur Species Including Polysulfides at Seep Sites on Intertidal Sand Flats (Wadden Sea, North Sea). In: Marine Chemistry 121, pp.17-2682 (2010). ScienceDirect |
| Kano, A., T.G. Ferdelman, T. Williams: The Pleistocene Cooling Built Challenger Mound, a Deep-Water Coral Mound in the NE Atlantic: Synthesis from IODP Expedtion 307. The Sedimentary Record 8, pp. 4-9; doi: 10.2110/sedred.2010.4 (2010). Full Text |
| Koch, BP, T. Dittmar and A.L. Ramanathan: The Biogeochemistry of the Caete Mangrove-Shelf System. In: Management and Sustainable Development of Coastal Zone Environments/Ecological Studies 211(2), pp. 45-67. Springer-Verlag Berlin, Ramanathan A, Bhattacharya P, Dittmar T, Bala Krishna Prasad M, Nepunae B.(eds.). doi: 10.1007/978-3-642-13457-9_5 (2010). |
| Lettmann K.A, N. Riedinger, R. Ramlau, N. Knab, M.E. Böttcher, A. Khalili, J.O.Wolff and B.B. Jørgensen: Estimation of Biogeochemical Rates from Concentration Profiles: A Novel Inverse Method. In: Estuarine, Coastal and Shelf Science, pp. 1-12 (2010). ScienceDirect |
| Lin, Y.S, VB. Heuer, TG. Ferdelman and KU. Hinrichs: Microbial Conversion of Inorganic Carbon to Dimethyl Sulfide in Anoxic Lake Sediment (Plussssee, Germany). In: Biogeosciences Discuss., 7, pp. 2569–2599 (2010). Biogeosciences Full Text |
| Nabbefeld B, Grice K., Twitchett R., Summons R.E., Hays L., Böttcher M.E. and Asif M:An Integrated Biomarker, Isotopic and Palaeoenvironmental Study through the Late Permian Event at Lusitaniadalen, Spitsbergen. In: Earth and Planetetary Science Letters 291, pp. 84-96 (2010). ScienceDirect |
| Naqvi, S.W.A, H.W. Bange, L. Farías, P.M.S. Monteiro, M.I. Scranton, and J. Zhang: Marine Hypoxia/Anoxia as a Source of CH4 and N2O. In: Biogeoscience 7, pp. 2159–2190. doi:10.5194/bg-7-2159-2010 (2010). Biogeosciences Full Text |
| Picard, A, I. Daniel, PH. Oger, D. Testemale and J.L. Hazemann: Microbial Selenium and Iron Reduction under High Pressure. Goldberg Abstract A816 (2010). Full Text |
| Pirlet, H., L.M. Wehrmann, B. Brunner, N. Frank, J. Dewanckele, D. Van Rooij, A. Foubert, R. Swennen, L. Naudts, M. Boone, V. Cnudde and J.P. Henriet: Diagenetic Formation of Gypsum and Dolomite in a Cold-Water Coral Mound in the Porcupine Seabight of Ireland. In: Sedimentology 57, pp. 786-805 (2010). Wiley |
| Prasad MBK, T. Dittmar and A.L. Ramanathan: Organic Matter and Mangrove Productivity. In: Management and Sustainable Development of Coastal Zone Environments, pp. 175-193. Springer-Verlag Berlin, Ramanathan A, Bhattacharya P, Dittmar T, Bala Krishna Prasad M, Nepunae B.(eds.), (2010). Springer |
| Riedinger N., B. Brunner, M.J. Formolo, E. Solomon, S. Kasten, M. Strasser and T.G. Ferdelman: Oxidative Sulfur Cycling in the Deep Biosphere of the Nankai Trough, Japan. In: Geological Society of America 38, pp. 851-854 (2010). Geology |
| Riedinger N, B. Brunner, Y.-S. Lin, A. Vossmeyer, T.G. Ferdelman, B.B. Jørgensen: Methane at the Sediment-Water Transition in Black Sea Sediments. In: Chemical Geology 274, pp. 29-37 (2010). ScienceDirect |
| Rincón-Martínez, D, F. Lamy, S. Contreras, G. Leduc, E. Bard, C. Saukel, T. Blanz, A. Mackensen, and R. Tiedemann: More Humid Interglacials in Ecuador during the Past 500 kyr Linked to Latitudinal Shifts of the Equatorial Front and the Intertropical Convergence Zone in the Eastern Tropical Pacific.In: Paleoceanography 25, PA2210, pp. 1-15. doi:10.1029/2009PA001868 (2010). Wiley Full Text |
| Robador A, V. Brüchert, A. Steen and C. Arnosti: Temperature Induced Decoupling of Enzymatic Hydrolysis and Carbon Remineralization in Long-Term Incubations of Arctic and Temperate Sediments. In: Geochimica et Cosmochimica Acta 74, pp. 2316-2326 (2010). ScienceDirect |
| Sawicka J.E, A. Robador, C. Hubert, B.B. Jørgensen and V. Brüchert: Effects of Freeze-Thaw Cycles on Anaerobic Microbial Processes in an Arctic Intertidial Mud Flat. In: ISME Journal 4, pp. 585-594 (2010). PubMed Full Text |
| Soulet G., Delaygue G, Vallet-Coulomb C., Böttcher,M.E., Sonzogni C., Lericolais G. & Bard E: Glacial Hydrological Conditions in the Black Sea Reconstructed using Geochemical Pore Water Profiles. In: Earth & Planetary Science Letters 296, pp. 57-66 (2010). Archimer Full Text |
| Turchyn, A. V, V. Brüchert, T. W. Lyons, G. S. Engel, N. Balci, D. P. Schrag and B. Brunner: Kinetic Oxygen Isotope Effects during Dissimilatory Sulfate Reduction: A Combined Theoretical and Experimental Approach. In: Geochimica et Cosmochimica Acta, 74, pp. 2011-2024 (2010). ScienceDirect |
| Waska, H. and G. Kim: Differences in Microphytobenthos and Macrofaunal Abundances Associated with Groundwater Discharge in the Intertidal Zone. In: Marine Ecology Progress Series 407, pp.159-172 (2010). MEPS |
| Zerkle, A.L, A. Kamyshny Jr, L.R. Kump, J. Farquhar, H. Oduro and M.A. Arthur: Sulfur Cycling in a Stratified Euxinic Lake with Moderately High Sulfate: Constraints from Quadruple S isotopes. In: Geochimica et Cosmochimica Acta 74, pp. 4953-4970 (2010). ScienceDirect |
| Ziegenbalg, S.B, B. Brunner, J.M. Rouchy, D. Birgel, C. Pierre, M.E. Böttcher, A. Caruso, A. Immenhauser and J. Peckmann: Formation of Secondary Carbonates and Native Sulphur in Sulphate-Rich Messinian Strata, Sicily. In: Sedimentary Geology 227, pp. 37-50 (2010). ScienceDirect |
| Bayraktarov, Eliza: The pH-Dependence of Sulfate Reduction in Shallow Submarine Hydrothermal CO2 Venting Sediments (Milos Island, Greece). 56pp. University of Bremen, Bremen (2010). |
| Beiruti, Zainab: Sulfur Isotope Effects Caused by Sulfide-Oxidizing Bacteria: Model Meets Reality. 51pp. Master thesis, MSc. University of Bremen, MARMIC. Bremen (2010). |
| Dunker, Rita: Motility of the Giant Sulfur Bacteria Beggiatoa in the Marine Environment. 141pp. Dissertation, University of Bremen, Bremen (2010). |
| Wehrmann, Laura: Biogeochemical Processes in Sediments Associated to Cold-Water Coral: Ecosystems from Living Reefs to Ancient Mounds. 219pp. Dissertation, University of Bremen, Bremen (2010). |
Microbial Genomics Group
| Buttigieg, P.L: Perspectives on Presentation and Pedagogy in Aid of Bioinformatics Education. Briefings in Bioinformatics Vol. 11 Nr. 6, pp. 587-597. doi:10.1093/bib/bbq062 (2010). PubMed Full Text |
| Duhaime, M. B, A. Wichels, J. Waldmann, H. Teeling, and F. O. Glöckner: Ecogenomics and Genome Landscapes of Marine Pseudoalteromonas Phage H105/1. In: ISME Journal 5, pp. 107–121. doi:10.1038/ismej.2010.94 (2010). PubMed Full Text |
| Glöckner, F. O, and I. Joint: Marine microbial genomics in Europe: Current Status and Perspectives. In: Microbial Biotechnology 3, pp.523-530 (2010). PubMed Full Text |
| Glöckner, J, M. Kube, P. M. Shrestha, M. Weber, F. O. Glöckner, R. Reinhardt, and W. Liesack: Phylogenetic Diversity and Metagenomics of Candidate Division OP3. In: Environmental Microbiology 12, pp.1218-1229 (2010). PubMed |
| Hankeln, W, P. L. Buttigieg, D. Fink, R. Kottmann, P. Yilmaz, and F. O. Glöckner: MetaBar - A Tool for Consistent Contextual Data Acquisition and Standards Compliant Submission. In: BMC Bioinformatics 11:358 (2010). PubMed Full Text |
| Kottmann, R, I. Kostadinov, M. B. Duhaime, P. L. Buttigieg, P. Yilmaz, W. Hankeln, J. Waldmann, and F. O. Glöckner: Megx.net: Integrated Database Resource for Marine Ecological Genomics. In: Nucleic Acid Res. 38, pp. 391-395 (2010). PubMed Full Text |
| Meyerdierks, A, and F. O. Glöckner: Metagenome Analysis. In: Introduction to Marine Genomics Vol. 1, pp. 33-72, Springer-Verlag, Cock, K. Tessmar-Raible, C. Boyen, and F. Viard (eds), Netherlands (2010) |
| Pena, A, H. Teeling, J. Huerta-Cepas, F. Santos, P. Yarza, J. Brito-Echeverria, M. Lucio, P. Schmitt-Kopplin, I. Meseguer, C. Schenowitz, et al.: Fine-Scale Evolution: Genomic, Phenotypic and Ecological Differentiation in Two Coexisting Salinibacter Ruber Strains. In: ISME Journal 4, pp.882-895 (2010). PubMed Full Text |
| Polato NR, CR. Voolstra, J. Schnetzer, MK. DeSalvo, CJ. Randall, et al: Location-Specific Responses to Thermal Stress in Larvae of the Reef-Building Coral Montastraea faveolata. In: PLoS ONE 5(6), e11221, Dee A. Carter (eds.). doi:10.1371/journal.pone.0011221 (2010). PubMed Full Text |
| Teeling, H, and F. O. Glöckner: Integration von Omics-Daten in der marinen Ökosystemforschung. In: Laborwelt 4, pp. 6-9 (2010). ResearchGate |
| Verslyppe, B, R. Kottmann , W. De Smet , B. De Baets, P. De Vos , P. Dawyndt: Microbiological Common Language (MCL): A Standard for Electronic Information Exchange in the Microbial Commons. In: Research in Microbiology 161, pp. 439-445. doi:10.1016/j.resmic.2010.02.005 (2010). PubMed |
| Weber, M, H. Teeling, S. Huang, J. Waldmann, M. Kassabgy, B. M. Fuchs, A. Klindworth, C. Klockow, A. Wichels, G. Gerdts, et al: Practical Application of Self-Organizing Maps to Interrelate Biodiversity and Functional Data in NGS-Based Metagenomics. In: ISME Journal, pp. 1-11 (2010). PubMed Full Text |
| Wecker, P., C. Klockow, M. Schüler, J. Dabin, G. Michel, and F. O. Glöckner: Life Cycle Analysis of the Model Organism Rhodopirellula baltica SH1T by Transcriptome Studies. In: Microbial Biotechnology 3, pp. 583-594 (2010). PubMed Full Text |
| Yarza, P, W. Ludwig, J. Euzeby, R. Amann, K. H. Schleifer, F. O. Glöckner and R. Rossello-Mora: Update of the All-Species Living Tree Project Based on 16S and 23S rRna Sequence Analyses. In: Systematic and Applied Microbiology 33, pp. 291-299 (2010). PubMed |
| Grace, Miriam: Exploring Microbial Community Responses to Marine Pollution: Insights from Ecological Genomics. 87pp. Master thesis, University of Bremen, Bremen (2010). |
| Moraru, Gabriel: Building a Scalable High-Throughput Pipeline for Processing Next-Generation Sequencing Data . 290pp. Master thesis, University of Liverpool, Liverpool (2010). |
| Duhaime, Melissa Beth: Exploring the Marine Virosphere: From Genome Context to Content. 158pp. Jacobs University of Bremen/ Max-Planck Institute for marine Microbiology, Bremen (2010). |
Microbial Habitat Group
| Alonso, C, P. Gómez-Pereira, A. Ramette, L. Ortega, B.M. Fuchs and R. Amann: Multilevel Analysis of the Bacterial Diversity along the Environmental Gradient Río de la Plata-South Atlantic Ocean. In: Aquatic Microbial Ecology 61, pp. 57–72 (2010). AME |
| Amaral-Zettler, L, L.F. Artigas, J. Baross, P.A.L. Bharathi, A. Boetius, D. Chandramohan, G. Herndl, K. Kogure, P. Neal, C. Pedrós-Alió, A. Ramette, S. Schouten, L. Stal, A. Thessen, J. de Leeuw and M. Sogin: A Global Census of Marine Microbes. In: A Life in the World′s Oceans�. Blackwell Publishing Part 3: Oceans Present – Global Distributions, D. McIntyre (ed.), pp. 223-245 (2010). Wiley |
| Aquilina, A, N.J. Knab, K. Knittel, G. Kaur, A. Geissler, S.P. Kelly, H. Fossing, C.S. Boot, R.J. Parkes, R.A. Mills, A. Boetius, J.R. Lloyd and R.D. Pancost:Biomarker Indicators for Anaerobic Oxidizers of Methane in Brackish-Marine Sediments with Diffusive Methane Fluxes. In: Organic Geochemistry 41, pp. 414-426 (2010). ScienceDirect |
| Boetius, A. and K. Knittel: Habitats of Anaerobic Methane Oxidizers. In: Handbook of Hydrocarbon and Lipid Microbiology, Part 21, pp. 2193-2202. Springer-Verlag, K.N. Timmis (ed.). doi: 10.1007/978-3-540-77587-4_159 (2010). Springer |
| Boetius, A. and F. Wenzhöfer: Methods for the Study of Cold Seep Ecosystems. In: Handbook of Hydrocarbon and Lipid Microbiology, Part 31, pp. 3443-3451. Springer-Verlag, K.N. Timmis (ed.), (2010). Springer |
| Bru, D, A. Ramette, N.P.A. Saby, S. Dequiedt, L. Ranjard, C. Jolivet, D. Arrouays and L. Philippot: Determinants of the Distribution of Nitrogen-Cycling Microbial Communities at the Landscape-Scale. In: ISME Journal 5, pp. 532-542 (2010). PubMed Full Text |
| Dale, A.W, S. Sommer, M. Haeckel, K. Wallmann, P. Linke, G. Wegener and O. Pfannkuche: Pathways and Regulation of Carbon, Sulfur and Energy Transfer in Marine Sediments Overlying Methane Gas Hydrates on the Opouawe Bank (New Zealand). In: Geochimica et Cosmochimica Acta 74, pp. 5763-5784 (2010). ScienceDirect |
| Dunker, R, H. Røy and B.B. Jørgensen: Temperature Regulation of Gliding Motility in Filamentous Sulfur Bacteria, Beggiatoa spp. In: FEMS Microbiology Ecology 73, pp. 234-242 (2010). PubMed |
| Felden, J, F. Wenzhöfer, T. Feseker and A. Boetius: Transport and Consumption of Oxygen and Methane in Different Habitats of the Håkon Mosby Mud Volcano (HMMV). In: Limnology and Oceanography 55(6), pp. 2366-2380 (2010). ePrints Full Text |
| Fischer, J.P. and T.G. Ferdelman: Vierzig Tage in der Wasserwüste. In: Spektrum der Wissenschaft 03/10, pp. 16-18 (2010). Spektrum |
| Fischer, J.P. and F. Wenzhöfer: A Novel Planar Optode Setup for Concurrent Oxygen and Light Field Imaging: Application to a Benthic Phototrophic Community. In: Limnology and Oceanography Methods 8, pp. 254-268 (2010). ASLO Full Text |
| Gobet, A, C. Quince and A. Ramette: Multivariate Cutoff Level Analysis (MultiCoLA) of Large Community Datasets. Nucleic Acids Research 38 (15), pp. 1-9 (2010). PubMed Full Text |
| Grünke, S, A. Lichtschlag, D. de Beer, M. Kuypers, T. Lösekann-Behrens, A. Ramette and A. Boetius: Novel Observations of Thiobacterium, a Sulfur-Storing Gammaproteobacterium Producing Gelatinous Mats. In: ISME Journal 4, pp. 1031-1043 (2010). PubMed Full Text |
| Jørgensen, B.B, R. Dunker, S. Grünke and H. Røy: Filamentous Sulfur Bacteria, Beggiatoa spp., in Arctic Marine Sediments (Svalbard, 79°N). FEMS Microbiology Ecology 73, pp. 500-513 (2010). PubMed |
| Joye, S.B, M.W. Bowles, V.A. Samarkin, K.S. Hunter and H. Niemann: Biogeochemical Signatures and Microbial Activity of Different Cold-Seep Habitats Along the Gulf of Mexico Deep Slope. Deep Sea Research II 57, pp. 1990-2001 (2010). ScienceDirect |
| Knief, C, A. Ramette, L. Frances, C. Alonso-Blanco and J.A. Vorholt: Site and Plant Species are Important Determinants of the Methylobacterium Community Composition in the Plant Phyllosphere. In: ISME Journal 4, pp. 719–728 (2010). PubMed Full Text |
| Knittel, K. and A. Boetius: Anaerobic Methane Oxidizers. In: Handbook of Hydrocarbon and Lipid Microbiology, Part 19 (6), pp. 2023-2032. Springer Verlag, K.N. Timmis (ed.), (2010). Springer |
| Lichtschlag, A., J. Felden, V. Brüchert, A. Boetius and D. de Beer: Geochemical Processes and Chemosynthetic Primary Production in Different Thiotrophic Mats of the Håkon Mosby Mud Volcano (Barents Sea). Limnology and Oceanography 55, pp. 931-949 (2010). ASLO Full Text |
| Lichtschlag, A, J. Felden, F. Wenzhöfer, F. Schubotz, T. Ertefai, A. Boetius and D. de Beer: Methane and Sulfide Fluxes in Permanent Anoxia: In situ Studies at the Dvurechenskii Mud Volcano (Sorokin Trough, Black Sea). Geochimica et Cosmochimica Acta 74, pp. 5002-5018 (2010). ScienceDirect |
| López-López, A, P. Yarza, M. Richter, A. Suárez-Suárez, J. Antón, H. Niemann and R. Rosselló-Móra: Extremely Halophilic Microbial Communities in Anaerobic Sediments from a Solar Saltern. Environmental Microbiology Reports 2, pp. 258-271 (2010). PubMed |
| Mau, S, M.B. Heintz, F.S. Kinnaman and D.L. Valentine: Compositional Variability and Air-sea Flux of Ethane and Propane in the Plume of a Large, Marine Seep Field Near Coal Oil Point, CA. In: Special Issue Proceedings of the 9th International Conference in Marine Sediments, Geo-Marine Letters 30, pp. 367-378 (2010). |
| Meziti, A, A. Ramette, E. Mente and K. Kormas: Temporal Shifts of the Norway Lobster (Nephrops norvegicus) Gut Bacterial Communities. FEMS Microbiology Ecology 74, pp. 472–484 (2010). PubMed |
| Niemann, H. and A. Boetius: Mud Volcanoes. In: Handbook of Hydrocarbon and Lipid Microbiology, Part 3, pp. 205-214. Springer Verlag, K.N. Timmis (ed.), (2010). |
| Orcutt, B.N, S.B. Joye, S. Kleindienst, K. Knittel, A. Ramette, A. Reitz, V. Samarkin, T. Treude and A. Boetius: Impact of Natural Oil and Higher Hydrocarbons on Microbial Diversity, Distribution and Activity in Gulf of Mexico Cold-Seep Sediments. Deep-Sea Research II 57, pp. 2008–2021 (2010). ScienceDirect |
| Santillano, D, A. Boetius and A. Ramette: Improved dsrA-based Terminal Restriction Fragment Length Polymorphism Analysis of Sulfate-Reducing Bacteria. In: Applied and Environmental Microbiology 76, pp. 5308-5311 (2010). PubMed Full Text |
| Schauer, R, C. Bienhold, A. Ramette and J. Harder: Bacterial Diversity and Biogeography in Deep-Sea Surface Sediments of the South Atlantic Ocean. In: ISME Journal 4, pp. 159–170 (2010). PubMed Full Text |
| Schläppy, M.L, S. Schöttner, G. Lavik, M.M.M. Kuypers, D. de Beer and F. Hoffmann:: Evidence of Nitrification and Denitrification in High and Low Microbial Abundance Sponges. Marine Biology 157, pp. 593-602 (2010). PubMed Full Text |
| Sommer, S, P. Linke, O. Pfannkuche, H. Niemannn and T. Treude: Benthic Respiration in a Seep Habitat Dominated by Dense Beds of Ampharetid Polychaetes at the Hikurangi Margin (New Zealand). Marine Geology 272, pp. 223-232 (2010). ScienceDirect |
| Wei, C.-L, G.T. Rowe, E. Escobar-Briones, A. Boetius, T. Soltwedel, M.J. Caley, Y. Soliman, F. Huettmann, F. Qu, Z. Yu, C.R. Pitcher, R.L. Haedrich, M.K. Wicksten, M.A. Rex, J.G. Baguley, J. Sharma, R. Danovaro, I.R. MacDonald, et al: Global Patterns and Predictions of Seafloor Biomass using Random Forests. PLoS ONE 5(11), pp. 1-15 (2010). PubMed Full Text |
| Sonntag, Björn: Mikrobielle Deuterierung zur Ermittlung von Methanogeneseraten. 66pp. Diploma, University Bremen / Max Planck Institute for Marine Microbiology, Bremen (2010). |
| Gobet, Angélique: Microbial Community Ecology of Temperate Coastal Sands. Jacobs University Bremen / Max Planck Institute for Marine Microbiology, Bremen (2010). |
| Grünke, Stefanie: Diversity of Mat-Forming Sulfide-Oxidizing Bacteria at Continental Margins. 248pp. Dissertation, University Bremen / Max Planck Institute for Marine Microbiology, Bremen (2010). |
| Schöttner, Sandra: Bacterial Habitat Differentiation in Cold- and Warm-Water Coral Reef Ecosystems. Jacobs University Bremen / Max Planck Institute for Marine Microbiology, Bremen (2010). |
Mathematical Modeling Group
| Kindler, K, A. Khalili and R. Stocker: Diffusion-Limited Retention of Porous Particles at Density Interfaces. In: Proceedings of the National Academy of Sciences 107, pp. 22163-22168 (2010). PubMed Full Text |
| Kumar, J, P. Bera , A. Khalili:Influence of Inertia and Drag Terms on the Stability of Mixed Convection in a Vertical Porous-Medium Channel. In: International Journal of Heat and Mass 53 Nr. 23-24, pp. 5261-5273. doi:10.1016/j.ijheatmasstransfer.2010.07.033 (2010). ScienceDirect |
| Morad, M.R., Khalili, A. Roskosch and J. Lewandowski: Quantification of Pumping Rate of Chironomus Plumosus Larvae in Natural Burrows. In: Aquatic Ecology. 44 (1), pp.143-153 (2010). Springer Full Text |
| Roskosch, A, Morad, M. R., Khalili, A., and Lewandowski, J.: Bioirrigation by Chironomus Plumosus: Advective Flow Investigated by Particle Image Velocimetry. In: Journal of the North American Benthological Society. 29(3), pp. 789-802 (2010). BioOne |
Department of Microbiology
| Amann, J, D. Lange, M. Schüler and R. Rabus: Substrate-Dependent Regulation of Carbon Catabolism in Marine Sulfate-Reducing Desulfobacterium Autotrophicum HRM2. In: Journal of Molecular Microbiology and Biotechnology 18, pp. 74–84 (2010). PubMed |
| Brodkorb, D, M. Gottschall, R. Marmulla, F. Lüddeke, J. Harder: Linalool Dehydratase-Isomerase, a Bifunctional Enzyme in the Anaerobic Degradation of Monoterpenes. In: Journal of Biological Chemistry 285, pp. 30436-30442 (2010). PubMed Full Text |
| Ettwig, KF, MK. Butler, D. Le Paslier, E. Pelletier, S. Mangenot, M.M.M. Kuypers, F. Schreiber, BE. Dutilh, J. Zedelius, D. de Beer, et al: TI Nitrite-Driven Anaerobic Methane Oxidation by Oxygenic Bacteria. In: Nature 464, pp. 543-548. doi: 03.2010/0028-0836 (2010). PubMed |
| Harder, J.: Anaerobic Degradation of Isoprene-Derived Compounds. In: Handbook of Hydrocarbon and Lipid Microbiology, Chapter 12, Part 11, pp. 957-962. Springer-Verlag Berlin, Heidelberg, Timmis, K.N. (ed). doi: 10.1007/978-3-540-77587-4_68 (2010). Springer |
| Harder, J: Isoprene, Isoprenoids and Sterols. In: Handbook of Hydrocarbon and Lipid Microbiology, Chapter 7, Part 2, pp. 127-131. Springer-Verlag Berlin, Heidelberg, Timmis, K.N. (ed.) doi: 0.1007/978-3-540-77587-4_7 (2010). Springer |
| Katzmann, E, A. Scheffel, M. Gruska, J. M. Plitzko and D. Schüler: Loss of the Actin-Like Protein MamK has Pleiotropic Effects on Magnetosome Formation and Chain Assembly in Magnetospirillum. In: Molecular Microbiology 77(1), pp. 208–224. doi:10.1111/j.1365-2958.2010.07202.x (2010). PubMed |
| Lin Yu-Shih, F, J. F. Biddle, J.S. Lipp, B. N. Orcutt, T. Holler, A.Teske, K.U. Hinrichs: Effect of Storage Conditions on Archaeal and Bacterial Communities in Subsurface Marine Sediments. In: Geomicrobiology Journal 27: 3, pp. 261-272. doi: 10.1080/01490450903410423 (2010). TFO |
| Musat. F, H. Wilkes, A. Behrends, D. Woebken, F. Widdel: Microbial Nitrate-Dependent Cyclohexane Degradation Coupled with Anaerobic Ammonium Oxidation. In: ISME Journal 10, pp. 1751-7362 (2010). PubMed |
| Neumann, J, O. Grundmann, J. Thöming, S. Schulte and S. Stolte: Anaerobic Biodegradability of Ionic Liquid Cations under Denitrifying Conditions. In: Green Chemistry 12, pp. 620-627. doi: 10.1039/b918453h (2010). RSC |
| Rabus R. and K. Trautwein: Proteogenomics to Study the Anaerobic Degradation of Aromatic Compounds and Hydrocarbons. In: Handbook of Hydrocarbon and Lipid Microbiology, Chapter 81, Part 35, pp. 4385-4405. Springer-Verlag Berlin, Heidelberg, K. N. Timmis (ed.) doi: 10.1007/978-3-540-77587-4_344 (2010). Springer |
| Rotaru, A.E, C. Probian, H. Wilkes and J. Harder: Highly Enriched Betaproteobacteria Growing Anaerobically with P-Xylene and Nitrate. In: FEMS Microbiology Ecology 71, pp. 460-468. doi:10.1111/j.1574-6941.2009.00814.x (2010). PubMed |
| Schauer, R, C. Bienhold, A. Ramette and J. Harder: Bacterial Diversity and Biogeography in Deep-Sea Surface Sediments of the South Atlantic Ocean. In: ISME Journal 4, pp.159-170 (2010). PubMed Full Text |
| Schreiber L, T. Holler, K. Knittel, A. Meyerdierks, R. Amann: Intification of the Dominant Sulfate Reducing Bacteria Partner of Anaerobic Methanotrophs of the ANME-2 Clade. In: Environmental Microbiology 2(8), pp. 2327–2340 (2010). PubMed |
| Widdel, F. and F. Musat: Energetic and Other Quantitative Aspects of Microbial Hydrocarbon Utilization. In: Handbook of Hydrocarbon and Lipid Microbiology, Chapter 1, Part 1, pp. 729-763, Springer-Verlag Berlin, Heidelberg, Timmis, K.N (ed.) doi: 10.1007/978-3-540-775874_57 (2010). Springer |
| Widdel, F. and O. Grundmann: Biochemistry of the Anaerobic Degradation of Non Methane Alkanes. In: Handbook of Hydrocarbon and Lipid Microbiology, Chapter 8, Part 11, pp. 909-924. Springer-Verlag Berlin, Heidelberg, Timmis, K.N (ed.) doi: 10.1007/978-3-540- 77587-4_64 (2010). Springer |
| Widdel, F. and F. Musat: Diversity and Common Principles in Enzymatic Activation of Hydrocarbons. In: Handbook of Hydrocarbon and Lipid Microbiology, Chapter 14, Part 4, pp. 981-1009. Springer-Verlag Berlin, Heidelberg, Timmis, K.N (ed.) doi: 10.1007/978-3540-77587-4_70 (2010). Springer |
| Widdel, F: Cultivation of Anaerobic Microorganisms with Hydrocarbons as Growth Substrates. In: Handbook of Hydrocarbon and Lipid Microbiology, Part 33, Chapter 35, pp. 3787-3798. Springer-Verlag Berlin, Heidelberg, Timmis, K.N (ed.) doi: 10.1007/978-3-540-77587-4_298 (2010). Springer |
| Winkelmann, N, U. Jaekel, C. Meyer, W. Serrano, R. Rachel, R. Rosselló-Mora and J. Harder: Determination of the Diversity of Rhodopirellula Isolates from European Seas by Multilocus Sequence Analysis. In: Applied and Environmental Microbiology 76(3), pp. 776– 785. doi:10.1128/AEM.01525-09 (2010). PubMed Full Text |
| Zedelius, J, Rabus, R., Grundmann, O., Werner, I., Brodkorb, D., Schreiber, F., Ehrenreich, P., Behrends, A., Wilkes, H., Kube, M., Reinhardt, R. and Widdel, F.: Allkane Degradation Under Anoxic Conditions by a Nitrate-Reducing Bacterium with Possible Involvement of the Electron Acceptor in Substrate Activation. Environmental Microbiology Reports 3, pp. 125– 135. doi: 10.1111/j.1758-2229.2010.00198.x (2010). PubMed Full Text |
| Zink, K., and R. Rabus: Stress-Induced Changes in Phospholipids in Betaproteobacterium Aromatoleum Aromaticum Strain EbN1 Due to Alkylbenzene Growth Substrates. In: Journal of Molecular and Microbiology and Biotechnology 18, pp. 92–101 (2010). PubMed |
| Blume, Thomas: Isolierung mariner Bakterien der Familie Flavobacteriaceae und phylogenetische Einordnung durch 16S rRNA Gensequenzierung. 57pp. Bachelorarbeit, B.Sc. Hochschule Anhalt, Bremen (2010). |
| Dyksma, Stefan: Kinetische Eigenschaften der Linalool Dehydratase-Isomerase. 50pp. Bachelorarbeit, B.Sc. Hochschule Bremerhaven, Bremen (2010). |
| Grünberg, Maria: Deletion of the Linalool Dehydratase-Isomerase in Castellaniella defragrans. 37pp. Bachelorarbeit, B.Sc. Universität Rostock, Rostock/Bremen (2010). |
| Kulkarni, Upasana: Characterization of Bacterial Candidate Division OP3. 40pp. Masterarbeit, M.Sc. Universität Bremen, Bremen (2010). |
| Mardhiah Siregar, Ulfah: Molecular Diversity in a Hydrogen-Consuming Enrichment Culture from the South Pacific Gyre. 40pp. Master thesis, M.Sc. University of Gent, Gent (2010). |
| Marmulla, Robert: íœberexpression der Linalool Dehydratase-Isomerase aus Castellaniella defragrans 65Phen und Konstruktion einer Deletionsmutante. 64pp.Bachelorarbeit, B.Sc. University of Applied Sciences, FH Lausitz (2010). |
| Mayanna, Sathish: Diversity of Culturable Attached-Living Bacteria from North Sea Sediment. 58pp. Master thesis, European M.Sc. University of Gent, Bremen (2010). |
| Wang, Jun: Physical Enrichment and Physiological Activities of Bacterial Candidate Division OP3. 55pp. Master thesis, M.Sc. University of Gent, Bremen (2010). |
| Weber, Johanna Katharina: A Geranial Dehydrogenase from Castellaniella Defragrans: Overexpression in E. coli BL21 Star and Initial Characterization. 51pp. Masterarbeit, M.Sc. Hochschule Bremen, Bremen (2010). |
Microsensor Group
| Al-Najjar M.A.A, D. de Beer, B.B. Jørgensen, M. Kühl and L. Polerecky: Conversion and Conservation of Light Energy in a Photosynthetic Microbial mat Ecosystem. The ISME Journal: 4, pp. 440-449. doi:10.1038/ismej.2009.121 (2010). PubMed Full Text |
| Barak, Y, F. Schreiber, S. H. Thorne, C. H. Contag, D. de Beer and A. Matin: Role of Nitric Oxide in Salmonella Typhimurium-Mediated Cancer Cell Killing. BMC Cancer 10, pp.146-152 (2010). PubMed Full Text |
| Charette, M, C. Breier, H. Dulaiova, M. Gonneea, P. Henderson, K. Köger, A. Mulligan, A. Rao and C. Slomp: Nutrient Biogeochemistry in Permeable Sediments Impacted by Submarine Groundwater Discharge. Goldschmidt Conference Abstracts A162 (2010). Full Text |
| Ettwig, K. F, M. K. Butler, D. Le Paslier, E. Pelletier, S. Mangenot, M.M.M. Kuypers, F. Schreiber, B. E. Dutilh, J. Zedelius, D. de Beer, J. Gloerich, H. J. C. T. Wessels, T. et al: Nitrite-Driven Anaerobic Methane Oxidation by Oxygenic Bacteria. Nature 464, pp. 543-548 (2010). PubMed |
| Gao, H, F. Schreiber, G. Collins, M. M. Jensen, J. E. Kostka, G. Lavik, D. de Beer, H. Y. Zhou and M.M.M. Kuypers: Aerobic Denitrifictaion in Permeable Waddensea Sediments. The ISME Journal 4, pp. 417-426 (2010). PubMed Full Text |
| Girnth, A.-C, S. Grünke, A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhöfer, D. de Beer and A. Boetius:A Novel, Mat-Forming Thiomargarita Population Associated with a Sulfidic Fluid Flow from a Deep-Sea Mud Volcano (Eastern Mediterranean). Environmentral Micobiology 13(2), pp. 495-505. doi: 10.1111/j.1462-2920.2010.02353.x (2010). PubMed |
| Grünke, S., A. Lichtschlag, D. de Beer, M. Kuypers, T. Lösekann, A. Ramette, and A. Boetius: Novel Observations of Thiobacterium, a Sulfur-Storing Gammaproteobacterium Producing Gelatinous mats. ISME-Journal 4, pp. 1031–1043 (2010). PubMed Full Text |
| Heisterkamp, I. M, A. Schramm, D. de Beer and P. Stief: Nitrous Oxide Production Associated with Coastal Marine Invertebrates. Marine Ecology Progress Series 415, pp. 1-9 (2010). MEPS Full Text |
| Jogler, C, M. Niebler, W. Lin, M. Kube, G. Wanner, S. Kolinko, P. Stief, A. Beck, D. de Beer, N. Petersen, Y. Pan, R. Amann, R. Reinhard and, D. Schüler: Cultivation-Independent Characterization of "Candidatus Magnetobacterium bavaricum" via Ultrastructural, Geochemical, Ecological and Metagenomic Methods. Environmental Microbiology 12, pp. 2466-2478 (2010). PubMed |
| Kohls K, R.M. Abed, L. Polerecky, M.E. Weber and D. de Beer: Halotaxis of Cyanobacteria in an Intertidal Hypersaline Microbial mat. Environmental Microbiology 3, pp. 567-575 (2010). PubMed |
| Lichtschlag, A, J. Felden, V. Brüchert, A. Boetius and D. de Beer: Geochemical Processes and Chemosynthetic Primary Production in Different Thiotrophic mats of the Håkon Mosby Mud Volcano (Barents Sea). Limnology and Oceanography 55, pp. 931–949 (2010). ASLO Full Text |
| Lichtschlag, A, J. Felden, F. Wenzhofer, F. Schubotz, T. F. Ertefai, A. Boetius and D. de Beer: Methane and Sulfide Fluxes in Permanent Anoxia: In situ Studies at the Dvurechenskii Mud Volcano (Sorokin Trough, Black Sea). Geochimica et Cosmochimica Acta 74, pp. 5002-5018 (2010). ScienceDirect |
| Pellicer-Nacher, C., S. P. Sun, S. Lackner, A. Terada, F. Schreiber, Q. Zhou and B. F. Smets: Sequential Aeration of Membrane-Aerated Biofilm Reactors for High-Rate Autotrophic Nitrogen Removal: Experimental Demonstration. Environmental Science & Technology 44, pp. 7628-7634 (2010). PubMed |
| Rapaglia, J, E. DiSipio, H. Bokuniewicz , G.M. Zuppi, L. Zaggia, A. Galgaro and, A. Beck: Groundwater connections under a barrier beach: A case study in the Venice Lagoon. Continental Shelf Research 30, pp.119–126 (2010). ScienceDirect |
| Schläppy, M.L, M. Weber, D. Mendola, F. Hoffmann and D. de Beer: Heterogeneous Oxygenation Resulting from Active and Passive Flow in two Mediterranean Sponges, Dysidea avara and Chondrosia reniformis. Limnology and Oceanography 55, pp. 1289-1300. ASLO Full Text |
| Schläppy, M. L., S. I. Schöttner, G. Lavik, M. M. M. Kuypers, D. de Beer and F. Hoffmann: Evidence of Nitrification and Denitrification in High and Low Microbial Abundance Sponges. Marine Biology 157, pp. 593-602 (2010). PubMed Full Text |
| Schoon, R., A. Bissett and D. de Beer: Resilience of Pore-Water Chemistry and Calcification in Photosynthetic Zones of Calcifiying Sediments. Limnology and Oceanography 55, pp. 377-385 (2010). ASLO Full Text |
| Schreiber, F: Bakterien bilden Stickstoffmonoxid und Lachgas im Zahnbelag. Zahnarzt und Praxis 5, pp. 350-352 (2010). |
| Schreiber, F, P. Stief, A. Gieseke, I. M. Heisterkamp, W. Verstraete, D. de Beer and P. Stoodley: Denitrification in Human Dental Plaque. BMC Biology 8(24), pp. 1-11 (2010). PubMed Full Text |
| Stief, P, A. Behrendt, G. Lavik and D. de Beer: Combined Gel Probe and Isotope Labeling Technique for Measuring Dissimilatory Nitrate Reduction to Ammonium in Sediments at Millimeter-Level Resolution. Applied and Environmental Microbiology 76, pp. 6239-6247 (2010). PubMed Full Text |
| Stief, P, L. Polerecky, M. Poulsen and A. Schramm: Control of Nitrous Oxide Emission from Chironomus plumosus Larvae by Nitrate and Temperature. Limnology and Oceanography 55, pp. 872-884 (2010). ASLO Full Text |
| Stief, P. and A. Schramm: Regulation of Nitrous Oxide Emission Associated with Benthic Invertebrates. Freshwater Biology 55, pp. 1647-1657 (2010). Wiley |
| Schwermer, C. U, T.G. Ferdelman, P. Stief, A. Gieseke, N. Rezakhani, J. Van Rijn, D. de Beer and A. Schramm: Effect of Nitrate on Sulfur Transformations in Sulfidogenic Sludge of a Marine Aquaculture Biofilter. FEMS Microbiology Ecology 72, pp. 476-484 (2010). PubMed |
| Volkenborn, N, L. Polerecky, D. Wethey and S.A. Woodin: Oscillatory Porewater Bioadvection in Marine Sediments Induced by Hydraulic Activities of Arenicola Marina. Limnology and Oceanography 55, pp. 1231-1247 (2010). ePIC Full Text |
| von Ohle, C, A. Gieseke, L. Nistico, E.M. Decker, D. de Beer and P. Stoodley: Real Time Microsensor Measurement of Local Metabolic Activities in Ex Vivo Dental Biofilms Treated with Chlorhexidine. Applied Environmental Microbiology 76, pp. 2326 (2010). PubMed Full Text |
| Wangpraseurt, D, L. Polerecky, M. Weber, D. de Beer and M.M. Nugues: In Situ Characterization of Oxygene Microenvironments in Coral alga Interactions. PLoSOne, 7, e31192 (2010) PLoSOne Full Text |
| Zedelius, J., R. Rabus, O. Grundmann, I. Werner, D. Brodkorb, F. Schreiber, P. Ehrenreich, A. Behrends, H. Wilkes, M. Kube, R. Reinhardt, and F. Widdel: Alkane Degradation by a New Type of Denitrifying Bacterium with possible Involvement of the Electron Acceptor in Substrate Activation. Environmental Microbiology Reports 3(1), pp.125–135. doi: 10.1111/j.1758-2229.2010.00198.x (2010). PubMed Full Text |
| Zedelius, J., and F. Schreiber: Anaerobe Methanoxidation durch oxygene Bakterien. Bioforum 33, pp. 28-30 (2010). |
| Havemeyer, Sandra: Bacterial Polyphosphate Storage and Phosphate Release. 35pp. Master thesis, MSc. MARMIC Bremen, Bremen (2010). |
| Larsen, Lone Heimann: Microbiology of Nitrous Oxide Production from the Marine Mussel Mytilus edulis (Linnaeus). 81pp. Master thesis, MSc. Aarhus University, Denmark (2010). |
| Nitsch, Jana Lena:Nitrataufnahme, -speicherung und -verbrauch von Diatomeen.105 pp. Diploma, University of Oldenburg, Bremen (2010). |
| Wangpraseurt, Daniel: In situ Characterization of Oxygen Microenvironments in Coral- algal Interactions. 25pp. Master thesis, MSc. University of Bremen, Bremen, Germany (2010). |
| Wiedling, Johanna: Biogeochemical Investigations on a Shallow-Water Methane Seep in the Mediterranean Sea. 37pp. Bachelor thesis, BSc. University of Greifswald, Greifswald (2010). |
| Al-Najjar, Mohammad Ahmad A: Flow of Light Energy in Benthic Photosynthetic Microbial mats. 153pp. Dissertation University of Bremen, Bremen, Germany (2010). |
Department of Molecular Ecology
| Abed RM, N. Musat, F. Musat, M. Mußmann: Structure of Microbial Communities and Hydrocarbon-Dependent Sulfate Reduction in the Anoxic Layer of a Polluted Microbial mat. In: Marine Pollution Bulletin 62, pp. 539-546 (2010). PubMed |
| Alonso, C, P.R. Gómez-Pereira, A. Ramette, L. Ortega, B.M. Fuchs and R. Amann: Multilevel Analysis of the Bacterial Diversity along the Environmental Gradient Río de la Plata–South Atlantic Ocean. In: Aquatic Microbial Ecology 61, pp. 57-72. doi: 10.3354/ame01439 (2010). AME |
| Aquilina, A,N.J. Knab, K. Knittel, G. Kaur, A. Geissler, S.P. Kelly, H. Fossing, C.S. Boot, R.J. Parkes, R.A. Mills, A. Boetius, J.R. Lloyd, R.D. Pancost: Biomarker Indicators for Anaerobic Oxidizers of Methane in Brackish-Marine Sediments with Diffusive Methane Fluxes. In: Organic Biochemistry 41, pp. 414-426 (2010). ScienceDirect |
| Arnds, J, K. Knittel, U. Buck, M. Winkel, R. Amann: Development of a 16S rRNA- Targeted Probe Set for Verrucomicrobia and its Application for Fluorescence in Situ Hybridization in a Humic Lake. In: Systematic and Applied Microbiology 33, pp. 139-148 (2010). PubMed |
| Augspurger, C,C. Karwautz, M. Mussmann, H. Daims, T.J. Battin: Drivers of Bacterial Colonization Patterns in Stream Biofilms. In: FEMS Microbiol Ecol. 72(1), pp. 47-57 (2010). PubMed |
| Boetius, A. and K. Knittel: Habitats of Anaerobic Methane Oxidizers. In Handbook of Hydrocarbon and Lipid Microbiology. Part 21, pp. 2193-2202, Springer-Verlag Berlin, Heidelberg, K. N. Timmis (ed.), doi: 10.1007/978-3-540-77587-4_159 (2010). Springer |
| Girnth, A.C, S. Grünke, I.A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhöfer, D. de Beer, A. Boetius: A Novel, Mat-Forming Thiomargarita Population Associated with a Sulfidic Fluid Flow from a Deep-Sea Mud Volcano. In: Environmental Microbiology 13 (2), pp. 495-505. doi:10.1111/j.1462-2920.2010.02353 (2010). PubMed |
| Gomez-Pereira, P, C. Alonso, M. Oliver, J. van Beusekom, and B. Fuchs: Distinct Flavobacterial Communities in Contrasting Water Masses of the North Atlantic Ocean. In: ISME Journal 4, pp. 472–487 (2010). PubMed Full Text |
| Jogler, C, M. Niebler, W. Lin, M. Kube, G. Wanner, S. Kolinko, P. Stief, A.J. Beck, D. de Beer, N. Petersen, Y. Pan, R. Amann, R. Reinhard, and D. Schüler.:Cultivation Independent Characterization of Candidatus Magnetobacterium bavaricum Via Ultrastructural, Geochemical, Ecological and Metagenomic Methods. In: Environmental Microbiology 12, pp. 2466-2478 (2010). PubMed |
| Julies, E, B. Fuchs, C. Arnosti, and V. Brüchert: Organic Carbon Degradation in Anoxic Organic-Rich Shelf Sediments: Biogeochemical Rates and Microbial Abundance. In: Geomicrobiology Journal 27, pp. 303-314 (2010). TFO |
| Knittel, K. and A. Boetius:Anaerobic Methane Oxidizers. In Handbook of Hydrocarbon and Lipid Microbiology. Part 19, pp. 2023-2032, Springer-Verlag Berlin, Heidelberg, K. N. Timmis (ed.), doi:10.1007/978-3-540-77587-4_147 (2010). Springer |
| Lenk, S, J. Arnds, K. Zerjatke, N. Musat, R. Amann, M. Mußmann: Novel Groups of Gammaproteobacteria Catalyse Sulfur Oxidation and Carbon Fixation in a Coast al, Intertidal Sediment. In: Environmental Microbiology 13(3), pp. 758-774. doi: 10.1111/j.1462-2920.2010.02380.x (2010). PubMed |
| Meyerdierks, A., and F.O. Gloeckner: Metagenome Analysis. In: Introduction to Marine Genomics. pp. 33-71, Springer-Verlag Heidelberg, Cock, J.M., Tessmar-Raible, K., Boyen, C., and Viard, F (eds.) (2010). |
| Meyerdierks, A, M. Kube, L. Kostadinov, H. Teeling, F.O. Glöckner, R. Reinhardt and R. Amann: Metagenome and mRNA Expression Analyses of Anaerobic Methanotrophic Archaea of the ANME-1 Group. In: Environmental Microbiology 12, pp. 422-439 (2010). PubMed |
| Moraru, C, P. Lam, B.M. Fuchs, M.M.M. Kuypers and R. Amann: GeneFISH – an in Situ Technique for Linking Gene Presence and Cell Identity in Environmental Microorganisms. In: Environmental Microbiology 12, pp. 3057-3073 (2010). PubMed |
| Moraru, C, G. Moraru, B.M. Fuchs and R. Amann: Concepts and Software for a Rational Design of Polynucleotide Probes. In: Environmental Microbiology Reports 3, pp. 69–78. doi:10.1111/j.1758-2229.2010.00189 (2010). PubMed |
| Mussmann, M, S. Lenk, J. Arnds, K. Zerjatke, C. Moraru and R. Amann: Novel Groups of Sulfur Oxidizing Bacteria in Coastal Sediments. Goldschmidt Conference Abstracts A741 (2010). PubMed |
| Orcutt, B.N, S.B. Joye, S. Kleindienst, K. Knittel, A. Ramette, A. Reitz, V. Samarkin, T. Treude, A. Boetius: Impact of Natural Oil and Higher Hydrocarbons on Microbial Diversity, Distribution, and Activity in Gulf of Mexico Cold-Seep Sediments. Deep-Sea Research Part II 57, pp. 2008-2021 (2010). ScienceDirect |
| Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, P. Yarza, J. Brito-Echeverria, M. Lucio, P. Schmitt-Kopplin, I. Meseguer, C. Schenowitz, C. Dossat, V. Barbe, J. Dopazo, R. Rossello Mora, M. Schüler, F. O. Glöckner, R. Amann, T. Galbadon, and J. Anton.: Fine-Scale Evolution: Genomic, Phenotypic and Ecological Differentiation in Two Salinibacter rubber Strains. In: ISME Journal 4, pp. 882-895 (2010). PubMed Full Text |
| Schreiber, L, T. Holler, K. Knittel, A. Meyerdierks and R. Amann: Identification of the Dominant Sulfate-Reducing Bacterial Partner of Anaerobic Methanotrophs of the ANME-2 Clade. Environmental Microbiology 12, pp.2327-2340 (2010). PubMed |
| Serrano, W., R. Amann, R. Rossello-Mora, and U. Fischer: Evaluation of the Use of Multilocus Sequence Analysis (MLSA) to Resolve Taxonomic Conflicts with the Genus Marichromatium . In: Systematic and Applied Microbiology 33, pp. 116-121 (2010). PubMed |
| Simonato, F, P.R Gómez-Pereira, B.M. Fuchs and R. Amann: Bacterioplankton Diversity and Community Composition in the Southern Lagoon of Venice. Systematic and Applied Microbiology 33, pp.128-138 (2010). PubMed |
| Yarza, P, W. Ludwig, J. Euzeby, R. Amann, K.-H. Schleifer, F.O. Glöckner, and R. Rossello Mora: Update of the All-Species Living Tree Project Based on 16S and 23S rRNA Sequence Analyses. In: Systematic and Applied Microbiology 33, pp. 291-299 (2010). PubMed |
| Bennke, Christin: Distribution of Subgroups of Marine Bacteroidetes in the North Atlantic Ocean. 81pp. Diploma Thesis, University of Greifswald (2010). |
| Monsees, Hendrik: Einfluss von Licht auf die Nitrifikation mikrobieller Biofilme auf Lebenden Steinen in marinen Zierfischaufzuchtanlagen. 110pp. Diploma thesis, University of Bremen, Bremen (2010). |
| Nitzsche, Katja: Microbial Diversity of Hydrothermally Influenced Arsenic-Rich Sediments of the Coast of Milos Island, Greece. 121pp. Diploma Thesis, TU Bergakademie Freiberg, (2010). |
| Ruff, Emil: Microbial Communities of Marine Methane Seeps at Hikurangi Margin (New Zealand). 91pp. Diploma Thesis, University of Stuttgart (2010). |
| Torres Monroy, Ingrid: Growth Characteristics of Anerobic Anoxygenic Phototrophic Strains of the NOR5/OM60 Clade. Master thesis (MarMic), 43pp. University of Bremen, Bremen (2010). |
| Gomez Pereira, Paola Rocio: Marine Bacteroidetes: Distribution Patterns and Role in the Degradation of Organic Matter. 317pp. Dissertation University of Bremen, Bremen (2010). |
| Moraru, Cristina: Fluorescence in Situ Hybridization of Genes in Environmental Microbiology. 181pp. Dissertation University of Bremen, Bremen (2010). |
| Schauer, Regina: Diversity and Function of Microbial Communities in Sediments from Different Deep-Sea Habitats. 184pp. Dissertation, University of Bremen, Bremen (2010). |
| Schreiber, Lars: Assessing the Genetic Potential of Uncultivated Sulfate-Reducing Bacteria. 150pp. Dissertation, University of Bremen, Bremen (2010). |
Nutrient Group
| Contreras, S, C. B. Lange, S. Pantoja, G. Lavik, D. Rincón-Martínez, and M. M. M. Kuypers: A Rainy Northern Atacama Desert During the Last Interglacial. In: Geophysical Research Letters 37,L23612, pp. 1-5. doi: 10.1029/2010GL045728 (2010). Wiley Full Text |
| Ettwig, K. F, M. K. Butler, D. Le Paslier, E. Pelletier, S. Mangenot, M.M.M. Kuypers, F. Schreiber, B. E. Dutilh, J. Zedelius, D. de Beer, J. Gloerich, H.J.C.T. Wessels, et al: Nitrite-Driven Anaerobic Methane Oxidation by Oxygenic Bacteria. In: Nature 464, pp. 543-548 (2010). PubMed |
| Gao, H, F. Schreiber, G. Collins, M. M. Jensen, J. E Kostka, G. Lavik, D. de Beer, H.-Y. Zhou and M. M. M. Kuypers: Aerobic denitrification in permeable Wadden Sea sediments. In: ISME Journal 4, pp. 417-426 (2010). PubMed Full Text |
| Gihring, T. M., G. Lavik, M. M. M. Kuypers and J. E. Kostka: Direct Determination of Nitrogen Cycling rates and Pathways in Arctic Fjord Sediments (Svalbard, Norway). In: Limnology and Oceanography 55, pp. 740–752 (2010). ASLO Full Text |
| Grünke, S., A. Lichtschlag, D. de Beer, M.M.M. Kuypers, T. Lösekann-Behrens, A. Ramette and A. Boetius: Novel Observations of Thiobacterium, a Sulfur-Storing Gammaproteobacterium Producing Gelatinous mat. In: ISME Journal 4, pp. 1031–1043. doi: 10.1038/ismej.2010.23 (2010). PubMed Full Text |
| Kraal, P.C.P. Slomp, A. Forster and M.M.M. Kuypers: Phosphorus Cycling from the Margin to Abyssal Depths in the Proto-Atlantic During Oceanic Anoxic Event 2. In: Palaeogeography, Palaeoclimatology, Palaeoecology 295, pp. 42-54 (2010). ScienceDirect |
| Lam, P. and M.M.M. Kuypers: Microbial Nitrogen Cycling Processes in Oxygen Minimum Zones. Annual Review of Marine Science 3, pp. 317-345. doi:10.1146/annurev-marine-120709-142814 (2010). PubMed |
| Moraru, C, P. Lam, B. M. Fuchs, M.M M. Kuypers and R. Amann: GeneFISH – an In Situ Technique for Linking Gene Presence and Cell Identity in Environmental Microorganisms. In: Environmental Microbiology 12, pp. 3057–3073 (2010). PubMed |
| Ploug, H, Musat N., Adam B., Moraru C.L., Lavik G., Vagner T., Bergman B and M.M.M. Kuypers: Carbon and Nitrogen Fluxes Associated with the Cyanobacterium Aphanizomenon Sp. in the Baltic Sea. In: The ISME Journal 4, pp.1215–1223 (2010). PubMed Full Text |
| Rattray, J. E, J. van de Vossenberg, A. Jaeschke, E. C. Hopmans, S. G. Wakeham, G. Lavik, M.M.M. Kuypers, M. Strous, M. S.M. Jetten, S. Schouten and J. S. Sinninghe Damsté: Impact of Temperature on Ladderane Lipid Distribution in Anammox Bacteria. In: Applied and Environmental Microbiology 76, pp. 1596-1603 (2010). PubMed Full Text |
| Schläppy, M.-L, S. I. Schöttner, G. Lavik, M. M. M. Kuypers, D. de Beer and F. Hoffmann: Evidence for Nitrification and Denitrification in High and Low Microbial Abundance Sponges. In: Marine Biology 157, pp. 593-602 (2010). PubMed Full Text |
| Krupke, Andreas: Nutrient and Carbon Transfer Between Sulfate Reducing and Phototrophic Sulfur Bacteria Within the Chemocline of the Meromictic Lake Cadagno, Switzerland (2010). |
| Marchant, Hannah: The Effects of Ocean Acidification on Nitrogen Cycling in Permeable Coastal Sediments.70pp. Master of Science, MSc. Max Planck Research School of Marine Microbiology and the University of Bremen, Bremen (2010). |
| Sokoll, Sarah: Processes of Nitrogen Loss on the Makran Shelf in the Arabian Sea. 78pp. Master of Science, MSc. University of Rostock and Max-Planck-Institute for Marine Institute for Biosciences-Marine Biology Microbiology Bremen (2010). |
Microbial Fitness Group
| Geelhoed, J.S, H.V.M Hamelers and A.J.M Stams: Electricity-Mediated Biological Hydrogen Production. Current Opinion in Microbiology 13, pp. 307–315. doi:10.1016/j.mib.2010.02.002 (2010). PubMed |
| Medema, M.H., M. Zhou, S .van Hijum, J. Gloerich, H. Wessels, R.J. Siezen and M. Strous: A Predicted Physicochemically Distinct Sub-Proteome Associated with the Intracellular Organelle of the Anammox Bacterium Kuenenia Stuttgartiensis. BMC Genomics 11, pp. 1-14. doi: 10.1186/1471-2164-11-299 (2010). PubMed Full Text |
| Van Niftrik, L, M. van Helden, S. Kirchen, E.G. van Donselaar, H.R. Harhangi, R.I. Webb, A. Fuerst, J.M.H. Op den Camp, M.S.M. Jetten and M. Strous: Intracellular Localization of Membrane-Bound ATPases in the Compartmentalized Anammox Bacterium Candidatus Kuenenia stuttgartiensis. Molecular Microbiology 77(3), pp. 701–715. doi:10.1111/j.1365-2958.2010.07242.x (2010). PubMed Full Text |
Symbiosis Group
| Perner, M, J.M. Petersen, F. Zielinski, H.H.Gennerich and R. Seifert: Geochemical Constraints on the Diversity and Activityof H2-Oxidizing Microorganisms in diffuse Hydrothermal fluids from a basalt- and an ultrafamic-hosted vent. FEMS Microbiology Ecology 74(1), pp. 55–71, Gary King (ed.). doi: 10.1111/j.1574-6941.2010.00940.x (2010). PubMed |
| Petersen, J.M, A. Ramette, C. Lott, M.A. Cambon Bonavita, M. Zbinden and N. Dubilier: Dual Symbiosis of the Vent Shrimp Rimicaris Exoculata with Filamentous Gamma- and Epsilonproteobacteria at four Mid-Atlantic Ridge Hydrothermal Vent Fields. Environmental Microbiology 12, pp. 2204-2218. doi:10.1111/j.1462-2920.2009.02129.x (2010). PubMed |
| Ruehland, C. and N. Dubilier: Gamma- and Epsilonproteobacterial Ectosymbionts of a Shallow-Water Marine Worm are Related to Deep-Sea Hydrothermal Vent Ectosymbionts. Environmental Microbiology 12, pp. 2312–2326. doi:10.1111/j.1462-2920.2010.02256.x (2010). PubMed |
| Verna, C, A. Ramette, H. Wiklund, T.G. Dahlgren, A.G. Glover, F. Gaill and N. Dubilier: High Symbiont Diversity in the Bone-Eating Worm Osedax mucofloris from Shallow Whale-falls in the North Atlantic. Environmental Microbiology 12, pp. 2355–2370. doi: 10.1111/j.1462-2920.2010.02299.x (2010). PubMed |
| Zielinski, F. and N. Dubilier: Der Eukaryoten-Zellkern als ökologische Nische für Bakterien. BioSpektrum 16, pp.12-15 (2010). Full Text |