Seitenpfad:

Pu­bli­ka­tio­nen 2010

Pu­bli­ka­tio­nen 2010

De­part­ment of Bio­geo­che­mis­try

Al-Najjar, M., D. de Beer, B. B. Jørgensen, M. Kühl & L. Polerecky: Con­ver­si­on and Con­ser­va­ti­on of Light En­er­gy in a Pho­to­syn­the­tic Mi­cro­bi­al mat. In: ISME Jour­nal 4, pp. 440-449 (2010).  PubMed  Full Text
Baune, C, M.E. Böttcher: Ex­pe­ri­men­tal In­ves­ti­ga­ti­on of Sulphur Iso­to­pe Par­ti­tio­n­ing du­ring Out­gas­sing of Hy­dro­gen Sulphi­de from Di­lu­ted Aqueous So­lu­ti­ons and Sea­wa­ter. In: Iso­topes in En­vi­ron­men­tal and Health Stu­dies 46(4), pp. 444–453 (2010).  PubMed
Beck M., Riedel T., Graue T., Köster J., Kowalski N., Wu C.S., Wegener G., Lipsevers Y., Freund H., Böttcher M.E., Brumsack H.-J., Cypionka H., Rullkötter J. & Engelen B: Pa­leo-En­vi­ron­men­tal Im­prints on Mi­cro­bio­lo­gy and Bio­geo­che­mis­try in Co­as­tal Qua­tern­ary Se­di­ments. In: Bio­geo­sci­en­ces Dis­cuss. 7, pp. 5463-5496 (2010).  ResearchGate  Full Text
Bohrmann, G and B. B. Jørgensen: Cont­ri­bu­ti­ons from the 9th In­ter­na­tio­nal Con­fe­rence on Gas in Ma­ri­ne Se­di­ments, Uni­ver­si­ty of Bre­men, 15-19 Sep­tem­ber 2008, In: Geo-Ma­ri­ne Let­ters 30, pp. 151-155 (2010).  Springer
D′Andrilli. J, T. Dittmar, BP. Koch, JM. Purcell, Marshall AG and Cooper WT: Com­pre­hen­si­ve Cha­rac­te­riza­t­i­on of Ma­ri­ne Dis­sol­ved Or­ga­nic Mat­ter by Fou­rier Trans­form Ion Cy­clo­tron Re­so­nan­ce Mass Spec­tro­me­try with Elec­tro­s­pray and At­mo­s­phe­ric Pres­su­re Pho­toio­niza­t­i­on. In: Ra­pid Com­mu­ni­ca­ti­on in Mass Spec­tro­me­try 24, pp. 643-650 (2010).  PubMed
Deusner, C.V. Meyer, T.G. Ferdelman: High-Pres­su­re Sys­tems for Gas-Pha­se Free Con­ti­nuous In­cu­ba­ti­on of En­ri­ched Ma­ri­ne Mi­cro­bi­al Com­mu­nities Per­for­ming An­ae­ro­bic Oxi­da­ti­on of Me­tha­ne. In: Bio­tech­no­lo­gy and Bio­en­gi­nee­ring 105(3), pp. 524-33. doi: 10.1002/​bit.22553 (2010).  PubMed
Dunker, R., H. Røy, A. Kamp and B. B. Jørgensen: Tem­pe­ra­tu­re Re­gu­la­ti­on of Gli­ding Mo­ti­li­ty in Fil­amen­tous Sul­fur Bac­te­ria, Beggia­toa spp. In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 73, pp. 234-242 (2010).  PubMed
Evrard1, V,  K. Soetaert1, C.H.R. Heip, M. Huettel, M.A. Xenopoulos and J. J. Middelburg: Car­bon and Ni­tro­gen Flows through the Bent­hic Food Web of a Pho­tic Sub­ti­dal San­dy Se­di­ment In: Ma­ri­ne Eco­lo­gy Pro­gress Se­ries 416, pp. 1–16. doi: 10.3354/​mep­s08770 (2010).  MEPS  Full Text
Formolo, M.J: The Mi­cro­bi­al Pro­duc­tion of Me­tha­ne and other Vo­la­ti­le Hy­dro­c­ar­bons. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Vol. 4, pp. 113-126. Sprin­ger-Ver­lag Ber­lin, Tim­mis K.N. (ed.) (2010).  Springer
Gittel. A., M. Seidel, J. Kuever, A. S. Galushko, H. Cypionka and M. Könneke: Des­ul­fo­pi­la In­fer­na sp. Nov. : A Sul­fa­te-Re­du­cing Bac­te­ri­um Iso­la­ted from the Sub­sur­face of A Ti­d­al Sand­flat. In: In­ter­na­tio­nal Jour­nal of Sys­te­ma­tic and Evo­lu­tio­na­ry Mi­cro­bio­lo­gy 60, pp. 1626-1630. doi: 10.1099/​ijs.0.015644-0  (2010).  PubMed  Full Text
Goldhammer,T, V. Brüchert, T.G. Ferdelman and M. Zabel: Mi­cro­bi­al Se­que­stra­ti­on of Phos­pho­rus in An­oxic Up­wel­ling Se­di­ments. In: Na­tu­re Geo­sci­ence, 3, pp. 557 – 556. doi: 10.1038/​NGEO913 (2010).  Nature
Holmkvist, L., E. T. Arning, K. Küster, V. Vandieken, J. Peckmann, M. Zabel and B. B. Jørgensen: Phos­pha­te Geo­che­mis­try, Mi­ne­ra­liza­t­i­on Pro­ces­ses, and Thioploca Dis­tri­bu­ti­on in Shelf Se­di­ments of Cen­tral Chi­le. In: Ma­ri­ne Geo­lo­gy 277, pp. 61-72 (2010).  ScienceDirect
Hubert C: Mi­cro­bi­al Eco­lo­gy of Oil Re­ser­voir Sou­ring Con­trol by Ni­tra­te In­jec­tion. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Vol. 4, pp. 2753-2766. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis K.N. (ed.), (2010).  Springer
Hubert C. and A. Judd: Using Mi­cro­or­ga­nisms as Pro­s­pec­ting Agents in Oil and Gas Ex­plo­ra­ti­on. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Vol. 4, Chap­ter 23, pp 2713- 2725. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis K.N. (ed.), (2010).  Springer
Hubert C, C. Arnosti, V. Brüchert, A. Loy, V. Vandieken and B.B. Jørgensen: Ther­mo­phi­lic An­ae­ro­bes in Arc­tic Ma­ri­ne Se­di­ments In­du­ced to Mi­ne­ra­li­ze Com­plex Or­ga­nic Mat­ter at High Tem­pe­ra­tu­re. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 1089-1104 (2010).PubMed
Jørgensen, B. B: Big Sul­fur Bac­te­ria. In: ISME Jour­nal 4, pp. 1083-1084 (2010).  PubMed  Full Text
Jørgensen, B.B:  Me­tha­ne in the Oce­ans: A New En­er­gy Re­sour­ce, or a Con­cern for the En­vi­ron­ment. In: Aus den El­fen­bein­tür­men der Wis­sen­schaft 3, pp. 97-106. Wall­stein Ver­lag, Göt­tin­gen, E. Ne­her (ed.), (2010).
Jørgensen, B.B. and R.J. Parkes: Role of Sul­fa­te Re­duc­tion and Me­tha­ne Pro­duc­tion by Or­ga­nic Car­bon De­gra­da­ti­on in Eu­tro­phic Fjord Se­di­ments. In: Lim­no­lo­gy and Ocea­no­gra­phy 55 (Limfjor­den, Den­mark), pp.1338-1352 (2010).  ResearchGate
Jørgensen, B.B., R. Dunker, S. Grünke and H. Røy: Fil­amen­tous Sul­fur Bac­te­ria, Beggia­toa spp. in Arc­tic Ma­ri­ne Se­di­ments (Sval­bard, 79°N). In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 73, pp. 500-513 (2010).  PubMed
Kamyshny, A: Solubi­li­ty of Cy­cloc­ta­sul­fur in Wa­ter as a Func­tion of Tem­pe­ra­tu­re, Sal­in­i­ty and Sul­fi­de Con­cen­tra­ti­on.Gold­schmidt Con­fe­rence Ab­stracts A493 (2010).  Goldschmidt  Full Text
Kamyshny Jr. A. and T.GFerdelman: Dy­na­mics of Zero-Va­lent Sul­fur Spe­cies In­clu­ding Po­lys­ul­fi­des at Seep Sites on In­terti­dal Sand Flats (Wad­den Sea, North Sea). In: Ma­ri­ne Che­mis­try 121, pp.17-2682 (2010).  ScienceDirect
Kano, A., T.G. Ferdelman, T. Williams: The Plei­sto­ce­ne Coo­ling Built Chal­len­ger Mound, a Deep-Wa­ter Co­ral Mound in the NE At­lan­tic: Syn­the­sis from IODP Ex­ped­ti­on 307. The Se­di­men­ta­ry Re­cord 8, pp. 4-9; doi: 10.2110/​se­d­red.2010.4 (2010).  Full Text
Koch, BP, T. Dittmar and A.L. Ramanathan: The Bio­geo­che­mis­try of the Cae­te Man­gro­ve-Shelf Sys­tem. In: Ma­nage­ment and Sustainable De­ve­lop­ment of Co­as­tal Zone En­vi­ron­ments/​Eco­lo­gi­cal Stu­dies 211(2), pp. 45-67.  Sprin­ger-Ver­lag Ber­lin, Ra­ma­na­than A, Bhat­tacha­rya P, Ditt­mar T, Bala Krish­na Pra­sad M, Ne­pu­nae B.(eds.). doi: 10.1007/​978-3-642-13457-9_5 (2010).
Lettmann K.A, N. Riedinger, R. Ramlau, N. Knab, M.E. Böttcher, A. Khalili, J.O.Wolff and B.B. Jørgensen: Esti­ma­ti­on of Bio­geo­che­mi­cal Ra­tes from Con­cen­tra­ti­on Pro­files: A No­vel In­ver­se Me­thod. In: Es­tua­ri­ne, Co­as­tal and Shelf Sci­ence, pp. 1-12 (2010).  ScienceDirect
Lin, Y.S, VB. Heuer, TG. Ferdelman and KU. Hinrichs: Mi­cro­bi­al Con­ver­si­on of In­or­ga­nic Car­bon to Di­me­thyl Sul­fi­de in An­oxic Lake Se­di­ment (Plussssee, Ger­ma­ny). In: Bio­geo­sci­en­ces Dis­cuss., 7, pp. 2569–2599 (2010).  Biogeosciences  Full Text
Nabbefeld B, Grice K., Twitchett R., Summons R.E., Hays L., Böttcher M.E. and Asif M:An In­te­gra­ted Bio­mar­ker, Iso­to­pic and Pa­laeo­en­vi­ron­men­tal Stu­dy through the Late Per­mi­an Event at Lu­si­ta­ni­a­da­len, Spits­ber­gen. In: Earth and Pla­ne­te­ta­ry Sci­ence Let­ters 291, pp. 84-96 (2010).  ScienceDirect
Naqvi, S.W.A, H.W. Bange, L. Farí­as, P.M.S. Monteiro, M.I. Scranton, and J. Zhang: Ma­ri­ne Hy­po­xia/​An­oxia as a Sour­ce of CH4 and N2O. In: Bio­geo­sci­ence 7, pp. 2159–2190. doi:10.5194/​bg-7-2159-2010 (2010).  Biogeosciences  Full Text
Picard, A, I. Daniel, PH. Oger, D. Testemale and J.L. Hazemann: Mi­cro­bi­al Se­le­ni­um and Iron Re­duc­tion un­der High Pres­su­re. Gold­berg Ab­stract A816 (2010).  Full Text
Pirlet, H., L.M. Wehrmann, B. Brunner, N. Frank, J. Dewanckele, D. Van Rooij, A. Foubert, R. Swennen, L. Naudts, M. Boone, V. Cnudde and J.P. Henriet: Dia­ge­ne­tic For­ma­ti­on of Gyp­sum and Do­lo­mi­te in a Cold-Wa­ter Co­ral Mound in the Por­cu­p­i­ne Se­abight of Ire­land. In: Se­di­men­to­lo­gy 57, pp. 786-805 (2010).  Wiley
Prasad MBK, T. Dittmar  and A.L. Ramanathan: Or­ga­nic Mat­ter and Man­gro­ve Pro­duc­tivi­ty. In: Ma­nage­ment and Sustainable De­ve­lop­ment of Co­as­tal Zone En­vi­ron­ments, pp. 175-193. Sprin­ger-Ver­lag Ber­lin, Ra­ma­na­than A, Bhat­tacha­rya P, Ditt­mar T, Bala Krish­na Pra­sad M, Ne­pu­nae B.(eds.), (2010).  Springer
Riedinger N., B. Brunner, M.J. Formolo, E. Solomon, S. Kasten, M. Strasser and T.G. Ferdelman:  Oxi­da­ti­ve Sul­fur Cy­cling in the Deep Bio­s­phe­re of the Nan­kai Trough, Ja­pan. In: Geo­lo­gi­cal So­cie­ty of Ame­ri­ca 38, pp. 851-854 (2010).  Geology
Riedinger N, B. Brunner, Y.-S. Lin, A. Vossmeyer, T.G. Ferdelman, B.B. Jørgensen: Me­tha­ne at the Se­di­ment-Wa­ter Tran­si­ti­on in Black Sea Se­di­ments. In: Che­mi­cal Geo­lo­gy 274, pp. 29-37 (2010).  ScienceDirect
Rincón-Martí­nez, D, F. Lamy, S. Contreras, G. Leduc, E. Bard, C. Saukel, T. Blanz, A. Mackensen, and R. Tiedemann: More Hu­mid In­ter­gla­ci­als in Ecua­dor du­ring the Past 500 kyr Lin­ked to La­ti­tu­di­nal Shifts of the Equa­to­ri­al Front and the In­ter­tro­pi­cal Con­ver­gence Zone in the Eas­tern Tro­pi­cal Pa­ci­fic.In:  Pa­leo­cea­no­gra­phy 25, PA2210, pp. 1-15. doi:10.1029/​2009PA001868 (2010).  Wiley  Full Text
Robador A, V. Brüchert, A. Steen and C. Arnosti: Tem­pe­ra­tu­re In­du­ced De­cou­pling of En­zy­matic Hy­dro­ly­sis and Car­bon Re­mi­ne­ra­liza­t­i­on in Long-Term In­cu­ba­ti­ons of Arc­tic and Tem­pe­ra­te Se­di­ments. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, pp. 2316-2326 (2010).  ScienceDirect
Sawicka J.E, A. Robador, C. Hubert, B.B. Jørgensen and V. Brüchert: Ef­fects of Free­ze-Thaw Cy­cles on An­ae­ro­bic Mi­cro­bi­al Pro­ces­ses in an Arc­tic In­terti­di­al Mud Flat. In: ISME Jour­nal 4, pp. 585-594 (2010).  PubMed  Full Text
Soulet G., Delaygue G, Vallet-Coulomb C., Böttcher,M.E., Sonzogni C., Lericolais G. & Bard E: Gla­ci­al Hy­dro­lo­gi­cal Con­di­ti­ons in the Black Sea Re­con­struc­ted using Geo­che­mi­cal Pore Wa­ter Pro­files. In: Earth & Pla­ne­ta­ry Sci­ence Let­ters 296, pp. 57-66 (2010).  Archimer  Full Text
Turchyn, A. V, V. Brüchert, T. W. Lyons, G. S. Engel, N. Balci, D. P. Schrag and B. Brunner: Ki­ne­tic Oxy­gen Iso­to­pe Ef­fects du­ring Dis­si­mi­la­to­ry Sul­fa­te Re­duc­tion: A Com­bi­ned Theo­re­ti­cal and Ex­pe­ri­men­tal Ap­proach. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta, 74, pp. 2011-2024 (2010).  ScienceDirect
Waska, H. and G. Kim: Dif­fe­ren­ces in Mi­cro­phy­to­bent­hos and Ma­cro­fau­nal Ab­un­dan­ces As­so­cia­ted with Ground­wa­ter Di­sch­ar­ge in the In­terti­dal Zone. In: Ma­ri­ne Eco­lo­gy Pro­gress Se­ries 407, pp.159-172 (2010).  MEPS
Zerkle, A.L, A. Kamyshny Jr, L.R. Kump, J. Farquhar, H. Oduro and M.A. Arthur: Sul­fur Cy­cling in a Stra­ti­fied Eu­xi­nic Lake with Mo­dera­te­ly High Sul­fa­te: Cons­traints from Qua­drup­le S iso­topes. In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, pp. 4953-4970 (2010).  ScienceDirect
Ziegenbalg, S.B, B. Brunner, J.M. Rouchy, D. Birgel, C. Pierre, M.E. Böttcher, A. Caruso, A. Immenhauser and J. Peckmann: For­ma­ti­on of Se­con­da­ry Car­bo­na­tes and Na­ti­ve Sulphur in Sulp­ha­te-Rich Mes­si­ni­an Stra­ta, Si­ci­ly. In: Se­di­men­ta­ry Geo­lo­gy 227, pp. 37-50 (2010).  ScienceDirect
M.Sc theses
Bayraktarov, Eliza: The pH-De­pen­dence of Sul­fa­te Re­duc­tion in Shal­low Sub­ma­ri­ne Hydro­ther­mal CO2 Ven­ting Se­di­ments (Mi­los Is­land, Greece). 56pp. Uni­ver­si­ty of Bre­men, Bre­men (2010).
Beiruti, Zainab: Sul­fur Iso­to­pe Ef­fects Cau­sed by Sul­fi­de-Oxi­di­zing Bac­te­ria: Mo­del Meets Rea­li­ty. 51pp. Mas­ter the­sis, MSc. Uni­ver­si­ty of Bre­men, MAR­MIC. Bre­men (2010).
PhD theses
Dunker, Rita: Mo­ti­li­ty of the Gi­ant Sul­fur Bac­te­ria Beggiatoa in the Ma­ri­ne En­vi­ron­ment. 141pp. Dis­ser­ta­ti­on, Uni­ver­si­ty of Bre­men, Bre­men (2010).
Wehrmann, Laura: Bio­geo­che­mi­cal Pro­ces­ses in Se­di­ments As­so­cia­ted to Cold-Wa­ter Co­ral: Eco­sys­tems from Li­ving Reefs to An­ci­ent Mounds. 219pp. Dis­ser­ta­ti­on, Uni­ver­si­ty of Bre­men, Bre­men (2010).

Mi­cro­bi­al Ge­no­mics Group

Buttigieg, P.L:  Per­spec­tives on Pre­sen­ta­ti­on and Pe­dago­gy in Aid of Bio­in­for­ma­tics Edu­ca­ti­on. Brie­fings in Bio­in­for­ma­tics Vol. 11 Nr. 6, pp. 587-597. doi:10.1093/​bib/​bb­q062 (2010).  PubMed  Full Text
Duhaime, M. B, A. Wichels, J. Waldmann, H. Teeling, and F. O. Glöckner: Eco­ge­no­mics and Ge­no­me Land­scapes of Ma­ri­ne Pseu­do­al­te­ro­mo­nas Pha­ge H105/​1. In: ISME Jour­nal 5, pp. 107–121. doi:10.1038/​is­mej.2010.94 (2010).  PubMed  Full Text
Glöckner, F. O, and I. Joint: Ma­ri­ne mi­cro­bi­al ge­no­mics in Eu­ro­pe: Cur­rent Sta­tus and Per­spec­tives. In:  Mi­cro­bi­al Bio­tech­no­lo­gy 3, pp.523-530 (2010).  PubMed  Full Text
Glöckner, J, M. Kube, P. M. Shrestha, M. Weber, F. O. Glöckner, R. Reinhardt, and W. Liesack: Phy­lo­ge­ne­tic Di­ver­si­ty and Me­ta­ge­no­mics of Can­di­da­te Di­vi­si­on OP3. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp.1218-1229 (2010).  PubMed
Hankeln, W, P. L. Buttigieg, D. Fink, R. Kottmann, P. Yilmaz, and F. O. Glöckner: Me­ta­Bar - A Tool for Con­sis­tent Con­textu­al Data Ac­qui­si­ti­on and Stan­dards Com­p­li­ant Sub­mis­si­on. In: BMC Bio­in­for­ma­tics 11:358 (2010).  PubMed  Full Text
Kottmann, R, I. Kostadinov, M. B. Duhaime, P. L. Buttigieg, P. Yilmaz, W. Hankeln, J. Waldmann, and F. O. Glöckner: Megx.net: In­te­gra­ted Da­ta­ba­se Re­sour­ce for Ma­ri­ne Eco­lo­gi­cal Ge­no­mics. In: Nu­cleic Acid Res. 38, pp. 391-395 (2010).  PubMed  Full Text
Meyerdierks, A, and F. O. Glöckner: Me­ta­ge­no­me Ana­ly­sis. In: In­tro­duc­tion to Ma­ri­ne Ge­no­mics Vol. 1, pp. 33-72, Sprin­ger-Ver­lag, Cock, K. Tes­s­mar-Rai­b­le, C. Boy­en, and F. Vi­ard (eds), Nether­lands (2010)
Pena, A, H. Teeling, J. Huerta-Cepas, F. Santos, P. Yarza, J. Brito-Echeverria, M. Lucio, P. Schmitt-Kopplin, I. Meseguer, C. Schenowitz, et al.: Fine-Sca­le Evo­lu­ti­on: Ge­no­mic, Phe­no­ty­pic and Eco­lo­gi­cal Dif­fe­ren­tia­ti­on in Two Co­exis­ting Sa­li­ni­bac­ter Ru­ber Strains. In: ISME Jour­nal 4, pp.882-895 (2010).  PubMed  Full Text
Polato NR, CR. Voolstra, J. Schnetzer, MK. DeSalvo, CJ. Randall, et al: Lo­ca­ti­on-Spe­ci­fic Re­s­pon­ses to Ther­mal Stress in Lar­vae of the Reef-Buil­ding Co­ral Mon­tastraea fa­veo­la­ta. In: PLoS ONE 5(6), e11221, Dee A. Car­ter (eds.). doi:10.1371/​jour­nal.pone.0011221 (2010).  PubMed  Full Text
Teeling, H, and F. O. Glöckner: In­te­gra­ti­on von Omics-Da­ten in der ma­ri­nen Öko­sys­tem­for­schung. In: La­bor­welt 4, pp. 6-9 (2010).  ResearchGate
Verslyppe, B, R. Kottmann , W. De Smet , B. De Baets, P. De Vos , P. Dawyndt: Mi­cro­bio­lo­gi­cal Com­mon Lan­gua­ge (MCL): A Stan­dard for Elec­tro­nic In­for­ma­ti­on Ex­ch­an­ge in the Mi­cro­bi­al Com­mons. In: Re­se­arch in Mi­cro­bio­lo­gy 161, pp. 439-445. doi:10.1016/​j.res­mic.2010.02.005 (2010).  PubMed
Weber, M, H. Teeling, S. Huang, J. Waldmann, M. Kassabgy, B. M. Fuchs, A. Klindworth, C. Klockow, A. Wichels, G. Gerdts, et al: Prac­tical Ap­p­li­ca­ti­on of Self-Or­ga­ni­zing Maps to In­ter­re­la­te Bio­di­ver­si­ty and Func­tio­nal Data in NGS-Ba­sed Me­ta­ge­no­mics. In: ISME Jour­nal, pp. 1-11 (2010).  PubMed  Full Text
Wecker, P., C. Klockow, M. Schüler, J. Dabin, G. Michel, and F. O. Glöckner: Life Cy­cle Ana­ly­sis of the Mo­del Or­ga­nism Rho­do­pi­rel­lu­la bal­ti­ca SH1T by Tran­scrip­to­me Stu­dies. In: Mi­cro­bi­al Bio­tech­no­lo­gy 3, pp. 583-594 (2010).  PubMed  Full Text
Yarza, P, W. Ludwig, J. Euzeby, R. Amann, K. H. Schleifer, F. O. Glöckner and R. Rossello-Mora: Up­date of the All-Spe­cies Li­ving Tree Pro­ject Ba­sed on 16S and 23S rRna Se­quence Ana­ly­ses. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 33, pp. 291-299 (2010).  PubMed
M.Sc theses
Grace, Miriam: Ex­plo­ring Mi­cro­bi­al Com­mu­ni­ty Re­s­pon­ses to Ma­ri­ne Pol­lu­ti­on: In­sights from Eco­lo­gi­cal Ge­no­mics. 87pp. Mas­ter the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2010).
Moraru, Gabriel: Buil­ding a Scalable High-Through­put Pipe­line for Pro­ces­sing Next-Ge­ne­ra­ti­on Se­quen­cing Data . 290pp. Mas­ter the­sis, Uni­ver­si­ty of Li­ver­pool, Li­ver­pool (2010).
Ph.D theses
Duhaime, Melissa Beth: Ex­plo­ring the Ma­ri­ne Vi­ros­phe­re: From Ge­no­me Con­text to Con­tent. 158pp. Ja­cobs Uni­ver­si­ty of Bre­men/ Max-Planck In­sti­tu­te for ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2010).

Mi­cro­bi­al Ha­bi­tat Group

Alonso, C, P. Gómez-Pereira, A. Ramette, L. Ortega, B.M. Fuchs and R. Amann: Mul­ti­le­vel Ana­ly­sis of the Bac­te­ri­al Di­ver­si­ty along the En­vi­ron­men­tal Gra­di­ent Rí­o de la Pla­ta-South At­lan­tic Oce­an. In: Aqua­tic Mi­cro­bi­al Eco­lo­gy 61, pp. 57–72 (2010).  AME
Amaral-Zettler, L, L.F. Artigas, J. Baross, P.A.L. Bharathi, A. Boetius, D. Chandramohan, G. Herndl, K. Kogure, P. Neal, C. Pedrós-Alió, A. Ramette, S. Schouten, L. Stal, A. Thessen, J. de Leeuw and M. Sogin: A Glo­bal Cen­sus of Ma­ri­ne Mi­cro­bes. In: A Life in the World′s Oce­ans�. Black­well Pu­blis­hing Part 3: Oce­ans Pre­sent – Glo­bal Dis­tri­bu­ti­ons, D. McIn­ty­re (ed.), pp. 223-245 (2010).  Wiley
Aquilina, A, N.J. Knab, K. Knittel, G. Kaur, A. Geissler, S.P. Kelly, H. Fossing, C.S. Boot, R.J. Parkes, R.A. Mills, A. Boetius, J.R. Lloyd and R.D. Pancost:Bio­mar­ker In­di­ca­tors for An­ae­ro­bic Oxi­di­zers of Me­tha­ne in Bra­ckish-Ma­ri­ne Se­di­ments with Dif­fu­si­ve Me­tha­ne Flu­xes. In: Or­ga­nic Geo­che­mis­try 41, pp. 414-426 (2010).  ScienceDirect
Boetius, A. and K. Knittel: Ha­bi­tats of An­ae­ro­bic Me­tha­ne Oxi­di­zers. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Part 21, pp. 2193-2202. Sprin­ger-Ver­lag, K.N. Tim­mis (ed.). doi: 10.1007/​978-3-540-77587-4_159 (2010).  Springer
Boetius, A. and F. Wenzhöfer: Me­thods for the Stu­dy of Cold Seep Eco­sys­tems. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Part 31, pp. 3443-3451. Sprin­ger-Ver­lag, K.N. Tim­mis (ed.), (2010).  Springer
Bru, D, A. Ramette, N.P.A. Saby, S. Dequiedt, L. Ranjard, C. Jolivet, D. Arrouays and L. Philippot: De­ter­mi­nants of the Dis­tri­bu­ti­on of Ni­tro­gen-Cy­cling Mi­cro­bi­al Com­mu­nities at the Land­scape-Sca­le. In: ISME Jour­nal 5, pp. 532-542 (2010).  PubMed  Full Text
Dale, A.W, S. Sommer, M. Haeckel, K. Wallmann, P. Linke, G. Wegener and O. Pfannkuche: Pa­thways and Re­gu­la­ti­on of Car­bon, Sul­fur and En­er­gy Trans­fer in Ma­ri­ne Se­di­ments Over­ly­ing Me­tha­ne Gas Hy­dra­tes on the Opoua­we Bank (New Ze­a­land). In: Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, pp. 5763-5784 (2010).  ScienceDirect
Dunker, R, H. Røy and B.B. Jørgensen: Tem­pe­ra­tu­re Re­gu­la­ti­on of Gli­ding Mo­ti­li­ty in Fil­amen­tous Sul­fur Bac­te­ria, Beggiatoa spp. In: FEMS Mi­cro­bio­lo­gy Eco­lo­gy 73, pp. 234-242 (2010).  PubMed
Felden, J, F. Wenzhöfer, T. Feseker and A. Boetius: Trans­port and Con­sump­ti­on of Oxy­gen and Me­tha­ne in Dif­fe­rent Ha­bi­tats of the Hå­kon Mos­by Mud Vol­ca­no (HMMV). In: Lim­no­lo­gy and Ocea­no­gra­phy 55(6), pp. 2366-2380 (2010).  ePrints   Full Text
Fischer, J.P. and T.G. Ferdelman: Vier­zig Tage in der Was­ser­wüs­te. In: Spek­trum der Wis­sen­schaft 03/​10, pp. 16-18 (2010).  Spektrum
Fischer, J.P. and F. Wenzhöfer: A No­vel Pla­nar Op­to­de Set­up for Con­cur­rent Oxy­gen and Light Field Ima­ging: Ap­p­li­ca­ti­on to a Bent­hic Pho­to­tro­phic Com­mu­ni­ty. In: Lim­no­lo­gy and Ocea­no­gra­phy Me­thods 8, pp. 254-268 (2010).  ASLO  Full Text
Gobet, A, C. Quince and A. Ramette: Mul­ti­va­ria­te Cu­toff Le­vel Ana­ly­sis (Mul­ti­Co­LA) of Lar­ge Com­mu­ni­ty Da­ta­sets. Nu­cleic Acids Re­se­arch 38 (15), pp. 1-9 (2010).  PubMed  Full Text
Grünke, S, A. Lichtschlag, D. de Beer, M. Kuypers, T. Lösekann-Behrens, A. Ramette and A. Boetius: No­vel Ob­ser­va­tions of Thiobacterium, a Sul­fur-Sto­ring Gam­ma­pro­te­ob­ac­te­ri­um Pro­du­cing Ge­la­ti­nous Mats. In: ISME Jour­nal 4, pp. 1031-1043 (2010).  PubMed  Full Text
Jørgensen, B.B, R. Dunker, S. Grünke and H. Røy: Fil­amen­tous Sul­fur Bac­te­ria, Beggiatoa spp., in Arc­tic Ma­ri­ne Se­di­ments (Sval­bard, 79°N). FEMS Mi­cro­bio­lo­gy Eco­lo­gy 73, pp. 500-513 (2010).  PubMed
Joye, S.B, M.W. Bowles, V.A. Samarkin, K.S. Hunter and H. Niemann: Bio­geo­che­mi­cal Si­gna­tu­res and Mi­cro­bi­al Ac­tivi­ty of Dif­fe­rent Cold-Seep Ha­bi­tats Along the Gulf of Me­xi­co Deep Slo­pe. Deep Sea Re­se­arch II 57, pp. 1990-2001 (2010).  ScienceDirect
Knief, C, A. Ramette, L. Frances, C. Alonso-Blanco and J.A. Vorholt: Site and Plant Spe­cies are Im­portant De­ter­mi­nants of the Methylobacterium Com­mu­ni­ty Com­po­si­ti­on in the Plant Phyl­lo­s­phe­re. In: ISME Jour­nal 4, pp. 719–728 (2010).  PubMed  Full Text
Knittel, K. and A. Boetius: An­ae­ro­bic Me­tha­ne Oxi­di­zers. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Part 19 (6), pp. 2023-2032. Sprin­ger Ver­lag, K.N. Tim­mis (ed.), (2010).  Springer
Lichtschlag, A., J. Felden, V. Brüchert, A. Boetius and D. de Beer: Geo­che­mi­cal Pro­ces­ses and Che­mo­syn­the­tic Pri­ma­ry Pro­duc­tion in Dif­fe­rent Thio­tro­phic Mats of the Hå­kon Mos­by Mud Vol­ca­no (Ba­rents Sea). Lim­no­lo­gy and Ocea­no­gra­phy 55, pp. 931-949 (2010).  ASLO   Full Text
Lichtschlag, A, J. Felden, F. Wenzhöfer, F. Schubotz, T. Ertefai, A. Boetius and D. de Beer: Me­tha­ne and Sul­fi­de Flu­xes in Per­ma­nent An­oxia: In situ Stu­dies at the Dvu­re­chens­kii Mud Vol­ca­no (Sorokin Trough, Black Sea). Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, pp. 5002-5018 (2010).  ScienceDirect
López-López, A, P. Yarza, M. Richter, A. Suárez-Suárez, J. Antón, H. Niemann and R. Rosselló-Móra: Ex­tre­me­ly Ha­lo­phi­lic Mi­cro­bi­al Com­mu­nities in An­ae­ro­bic Se­di­ments from a So­lar Sal­tern. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 2, pp. 258-271 (2010).  PubMed
Mau, S, M.B. Heintz, F.S. Kinnaman and D.L. Valentine: Com­po­si­tio­nal Va­ria­bi­li­ty and Air-sea Flux of Etha­ne and Pro­pa­ne in the Plu­me of a Lar­ge, Ma­ri­ne Seep Field Near Coal Oil Point, CA. In: Spe­cial Is­sue Pro­cee­dings of the 9th In­ter­na­tio­nal Con­fe­rence in Ma­ri­ne Se­di­ments, Geo-Ma­ri­ne Let­ters 30, pp. 367-378 (2010).
Meziti, A, A. Ramette, E. Mente and K. Kormas: Tem­po­ral Shifts of the Nor­way Lobs­ter (Nephrops norvegicus) Gut Bac­te­ri­al Com­mu­nities. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 74, pp. 472–484 (2010).  PubMed
Niemann, H. and A. Boetius: Mud Vol­ca­noes. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy,  Part 3, pp. 205-214. Sprin­ger Ver­lag,  K.N. Tim­mis (ed.), (2010).
Orcutt, B.N, S.B. Joye, S. Kleindienst, K. Knittel, A. Ramette, A. Reitz, V. Samarkin, T. Treude and A. Boetius: Im­pact of Na­tu­ral Oil and Hig­her Hy­dro­c­ar­bons on Mi­cro­bi­al Di­ver­si­ty, Dis­tri­bu­ti­on and Ac­tivi­ty in Gulf of Me­xi­co Cold-Seep Se­di­ments. Deep-Sea Re­se­arch II 57, pp. 2008–2021 (2010).  ScienceDirect
Santillano, D, A. Boetius and A. Ramette: Im­pro­ved dsrA-ba­sed Ter­mi­nal Re­stric­tion Frag­ment Length Po­ly­mor­phism Ana­ly­sis of Sul­fa­te-Re­du­cing Bac­te­ria. In: Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 76, pp. 5308-5311 (2010).  PubMed  Full Text
Schauer, R, C. Bienhold, A. Ramette and J. Harder: Bac­te­ri­al Di­ver­si­ty and Bio­geo­gra­phy in Deep-Sea Sur­face Se­di­ments of the South At­lan­tic Oce­an. In: ISME Jour­nal 4, pp. 159–170 (2010).  PubMed  Full Text
Schläppy, M.L, S. Schöttner, G. Lavik, M.M.M. Kuypers, D. de Beer and F. Hoffmann:: Evi­dence of Ni­tri­fi­ca­ti­on and De­ni­tri­fi­ca­ti­on in High and Low Mi­cro­bi­al Ab­un­dance Spon­ges. Ma­ri­ne Bio­lo­gy 157, pp. 593-602 (2010).  PubMed  Full Text
Sommer, S, P. Linke, O. Pfannkuche, H. Niemannn  and T. Treude: Bent­hic Re­spi­ra­ti­on in a Seep Ha­bi­tat Do­mi­na­ted by Den­se Beds of Am­pha­re­tid Po­ly­chae­tes at the Hi­kur­an­gi Mar­gin (New Ze­a­land). Ma­ri­ne Geo­lo­gy 272, pp. 223-232 (2010).  ScienceDirect
Wei, C.-L, G.T. Rowe, E. Escobar-Briones, A. Boetius, T. Soltwedel, M.J. Caley, Y. Soliman, F. Huettmann, F. Qu, Z. Yu, C.R. Pitcher, R.L. Haedrich, M.K. Wicksten, M.A. Rex, J.G. Baguley, J. Sharma, R. Danovaro, I.R. MacDonald, et al: Glo­bal Pat­terns and Pre­dic­tions of Seaf­loor Bio­mass using Ran­dom Fo­rests. PLoS ONE 5(11), pp. 1-15 (2010).  PubMed   Full Text
M.Sc theses
Sonntag, Björn: Mi­kro­bi­el­le Deu­te­rie­rung zur Er­mitt­lung von Me­tha­no­ge­ne­se­ra­ten. 66pp. Di­plo­ma, Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2010).
Ph.D. theses
Gobet, Angélique: Mi­cro­bi­al Com­mu­ni­ty Eco­lo­gy of Tem­pe­ra­te Co­as­tal Sands. Ja­cobs Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2010).
Grünke, Stefanie: Di­ver­si­ty of Mat-For­ming Sul­fi­de-Oxi­di­zing Bac­te­ria at Con­ti­nen­tal Mar­gins. 248pp. Dis­ser­ta­ti­on, Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2010).
Schöttner, Sandra: Bac­te­ri­al Ha­bi­tat Dif­fe­ren­tia­ti­on in Cold- and Warm-Wa­ter Co­ral Reef Eco­sys­tems. Ja­cobs Uni­ver­si­ty Bre­men / Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy, Bre­men (2010).

Ma­the­ma­ti­cal Mo­de­ling Group

Kindler, K, A. Khalili and R. Stocker: Dif­fu­si­on-Li­mi­ted Re­ten­ti­on of Po­rous Par­ti­cles at Den­si­ty In­ter­faces. In: Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces 107, pp.  22163-22168 (2010).  PubMed  Full Text
Kumar, J, P. Bera , A. Khalili:In­flu­ence of Iner­tia and Drag Terms on the Sta­bi­li­ty of Mi­xed Con­vec­tion in a Ver­ti­cal Po­rous-Me­di­um Chan­nel. In: In­ter­na­tio­nal Jour­nal of Heat and Mass 53 Nr. 23-24, pp. 5261-5273. doi:10.1016/​j.ijhe­at­mass­trans­fer.2010.07.033 (2010).  ScienceDirect
Morad, M.R., Khalili, A. Roskosch  and J. Lewandowski: Quan­ti­fi­ca­ti­on of Pum­ping Rate of Chi­ro­no­mus Plu­mo­sus Lar­vae in Na­tu­ral Bur­rows. In: Aqua­tic Eco­lo­gy. 44 (1), pp.143-153 (2010).  Springer  Full Text
Roskosch, A, Morad, M. R., Khalili, A., and Lewandowski, J.: Bio­ir­ri­ga­ti­on by Chi­ro­no­mus Plu­mo­sus: Ad­vec­tive Flow In­ves­ti­ga­ted by Par­ti­cle Image Ve­lo­ci­me­try. In: Jour­nal of the North Ame­ri­can Bentho­lo­gi­cal So­cie­ty. 29(3), pp. 789-802 (2010).  BioOne

De­part­ment of Mi­cro­bio­lo­gy

Amann, J, D. Lange, M. Schüler and R. Rabus: Sub­stra­te-De­pen­dent Re­gu­la­ti­on of Car­bon Ca­t­a­bo­lism in Ma­ri­ne Sul­fa­te-Re­du­cing Des­ul­fo­bac­te­ri­um Au­to­tro­phi­cum HRM2. In: Jour­nal of Mole­cu­lar Mi­cro­bio­lo­gy and Bio­tech­no­lo­gy 18, pp. 74–84 (2010).  PubMed
Brodkorb, D, M.  Gottschall, R. Marmulla, F. Lüddeke, J. Harder: Li­n­a­lool De­hy­dra­ta­se-Iso­me­ra­se, a Bi­func­tio­nal En­zy­me in the An­ae­ro­bic De­gra­da­ti­on of Mo­no­ter­pe­nes. In: Jour­nal of Bio­lo­gi­cal Che­mis­try 285, pp. 30436-30442 (2010).  PubMed  Full Text
Ettwig, KF, MK. Butler, D.  Le Paslier, E. Pelletier, S. Mangenot, M.M.M.  Kuypers, F. Schreiber, BE. Dutilh, J. Zedelius, D. de Beer, et al: TI Ni­tri­te-Dri­ven An­ae­ro­bic Me­tha­ne Oxi­da­ti­on by Oxy­ge­nic Bac­te­ria. In: Na­tu­re 464, pp. 543-548. doi: 03.2010/​0028-0836 (2010).  PubMed
Harder, J.: An­ae­ro­bic De­gra­da­ti­on of Iso­pre­ne-De­ri­ved Com­pounds. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Chap­ter 12, Part 11, pp. 957-962. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis, K.N. (ed). doi: 10.1007/​978-3-540-77587-4_68 (2010).  Springer
Harder, J: Iso­pre­ne, Iso­pre­no­ids and Ste­rols. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Chap­ter 7, Part 2, pp. 127-131. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis, K.N. (ed.) doi: 0.1007/​978-3-540-77587-4_7 (2010).  Springer
Katzmann, E, A. Scheffel, M. Gruska, J. M. Plitzko and D. Schüler: Loss of the Ac­tin-Like Pro­te­in MamK has Plei­otro­pic Ef­fects on Ma­gne­to­so­me For­ma­ti­on and Chain As­sem­bly in Ma­gne­to­spi­ril­lum. In: Mole­cu­lar Mi­cro­bio­lo­gy 77(1), pp. 208–224. doi:10.1111/​j.1365-2958.2010.07202.x (2010).  PubMed
Lin Yu-Shih, F,  J. F. Biddle, J.S. Lipp, B. N. Orcutt, T. Holler, A.Teske, K.U. Hinrichs: Ef­fect of Sto­r­a­ge Con­di­ti­ons on Ar­chae­al and Bac­te­ri­al Com­mu­nities in Sub­sur­face Ma­ri­ne Se­di­ments. In: Geo­mi­cro­bio­lo­gy Jour­nal 27: 3, pp. 261-272. doi: 10.1080/​01490450903410423 (2010).  TFO
Musat. F, H. Wilkes, A. Behrends, D. Woebken, F. Widdel: Mi­cro­bi­al Ni­tra­te-De­pen­dent Cy­clo­he­xa­ne De­gra­da­ti­on Cou­p­led with An­ae­ro­bic Am­mo­ni­um Oxi­da­ti­on. In: ISME Jour­nal 10, pp. 1751-7362 (2010).  PubMed
Neumann, J, O. Grundmann, J. Thöming, S. Schulte and S. Stolte: An­ae­ro­bic Bio­de­gra­da­bi­li­ty of Io­nic Li­quid Ca­ti­ons un­der De­ni­tri­fy­ing Con­di­ti­ons. In: Green Che­mis­try 12, pp. 620-627. doi: 10.1039/​b918453h (2010).  RSC
Rabus R. and K. Trautwein: Pro­teo­ge­no­mics to Stu­dy the An­ae­ro­bic De­gra­da­ti­on of Aro­ma­tic Com­pounds and Hy­dro­c­ar­bons. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Chap­ter 81, Part 35, pp. 4385-4405. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg,  K. N. Tim­mis (ed.) doi: 10.1007/​978-3-540-77587-4_344 (2010).  Springer
Rotaru, A.E, C. Probian, H. Wilkes and J. Harder: High­ly En­ri­ched Beta­pro­te­ob­ac­te­ria Gro­wing An­ae­ro­bi­cal­ly with P-Xy­le­ne and Ni­tra­te. In: FEMS Mi­cro­bio­lo­gy  Eco­lo­gy 71, pp. 460-468. doi:10.1111/​j.1574-6941.2009.00814.x (2010).  PubMed
Schauer, R, C. Bienhold, A. Ramette and J. Harder: Bac­te­ri­al Di­ver­si­ty and Bio­geo­gra­phy in Deep-Sea Sur­face Se­di­ments of the South At­lan­tic Oce­an. In: ISME Jour­nal 4, pp.159-170 (2010).  PubMed  Full Text
Schreiber L, T. Holler, K. Knittel, A. Meyerdierks, R. Amann: In­ti­fi­ca­ti­on of the Do­mi­nant Sul­fa­te Re­du­cing Bac­te­ria Part­ner of  An­ae­ro­bic Me­tha­notro­phs of the ANME-2 Cla­de. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy  2(8), pp. 2327–2340 (2010).  PubMed
Widdel, F. and F. Musat: En­er­ge­tic and Other Quan­ti­ta­ti­ve As­pects of Mi­cro­bi­al Hy­dro­c­ar­bon Uti­liza­t­i­on. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Chap­ter 1, Part 1, pp. 729-763, Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis, K.N (ed.) doi: 10.1007/​978-3-540-775874_57 (2010).  Springer
Widdel, F.  and O. Grundmann: Bio­che­mis­try of the An­ae­ro­bic De­gra­da­ti­on of Non Me­tha­ne Al­ka­nes. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Chap­ter 8, Part 11, pp. 909-924. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis, K.N (ed.) doi: 10.1007/​978-3-540- 77587-4_64 (2010).  Springer
Widdel, F. and F. Musat: Di­ver­si­ty and Com­mon Prin­ci­ples in En­zy­matic Ac­tiva­ti­on of Hy­dro­c­ar­bons. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Chap­ter 14, Part 4,  pp. 981-1009. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis, K.N (ed.) doi: 10.1007/​978-3540-77587-4_70 (2010).  Springer
Widdel, F: Cul­ti­va­ti­on of An­ae­ro­bic Mi­cro­or­ga­nisms with Hy­dro­c­ar­bons as Growth Sub­stra­tes. In: Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy, Part 33,  Chap­ter 35,  pp. 3787-3798. Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, Tim­mis, K.N (ed.) doi:  10.1007/​978-3-540-77587-4_298 (2010).  Springer
Winkelmann, N, U. Jaekel, C. Meyer, W. Serrano, R. Rachel, R. Rosselló-Mora and J. Harder: De­ter­mi­na­ti­on of the Di­ver­si­ty of Rho­do­pi­rel­lu­la Iso­la­tes from Eu­ro­pean Seas by Mul­ti­lo­cus Se­quence Ana­ly­sis. In: Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 76(3), pp. 776– 785. doi:10.1128/​AEM.01525-09 (2010).  PubMed  Full Text
Zedelius, J, Rabus, R., Grundmann, O., Werner, I., Brodkorb, D., Schreiber, F., Ehrenreich, P., Behrends, A., Wilkes, H., Kube, M., Reinhardt, R. and Widdel, F.: All­ka­ne De­gra­da­ti­on Un­der An­oxic Con­di­ti­ons by a Ni­tra­te-Re­du­cing Bac­te­ri­um with Pos­si­ble In­vol­ve­ment of the Elec­tron Ac­cep­tor in Sub­stra­te Ac­tiva­ti­on. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 3, pp. 125– 135. doi: 10.1111/​j.1758-2229.2010.00198.x (2010).  PubMed  Full Text
Zink, K., and R. Rabus: Stress-In­du­ced Chan­ges in Phos­pho­li­pids in Beta­pro­te­ob­ac­te­ri­um Aro­ma­to­le­um Aro­ma­ti­cum Strain EbN1 Due to Al­kyl­ben­ze­ne Growth Sub­stra­tes. In: Jour­nal of Mole­cu­lar and Mi­cro­bio­lo­gy and Bio­tech­no­lo­gy 18, pp. 92–101 (2010). PubMed
B.Sc and M.Sc theses
Blume, Thomas: Iso­lie­rung ma­ri­ner Bak­te­ri­en der Fa­mi­lie Flav­o­bac­te­ri­aceae und phy­lo­ge­ne­ti­sche Ein­ord­nung durch 16S rRNA Gen­se­quen­zie­rung. 57pp. Ba­che­l­or­ar­beit, B.Sc. Hoch­schu­le An­halt, Bre­men (2010).
Dyksma, Stefan: Ki­ne­ti­sche Ei­gen­schaf­ten der Li­n­a­lool De­hy­dra­ta­se-Iso­me­ra­se. 50pp. Ba­che­l­or­ar­beit, B.Sc. Hoch­schu­le Bre­mer­ha­ven, Bre­men (2010).
Grünberg, Maria: De­le­ti­on of the Li­n­a­lool De­hy­dra­ta­se-Iso­me­ra­se in Ca­s­tel­la­ni­el­la de­fra­grans. 37pp. Ba­che­l­or­ar­beit, B.Sc. Uni­ver­si­tät Ros­tock, Ros­tock/​Bre­men (2010).
Kulkarni, Upasana: Cha­rac­te­riza­t­i­on of Bac­te­ri­al Can­di­da­te Di­vi­si­on OP3. 40pp. Mas­ter­ar­beit, M.Sc. Uni­ver­si­tät Bre­men, Bre­men (2010).
Mardhiah Siregar, Ulfah: Mole­cu­lar Di­ver­si­ty in a Hy­dro­gen-Con­su­ming En­rich­ment Cul­tu­re from the South Pa­ci­fic Gyre. 40pp. Mas­ter the­sis, M.Sc. Uni­ver­si­ty of Gent, Gent (2010).
Marmulla, Robert: íœber­ex­pres­si­on der Li­n­a­lool De­hy­dra­ta­se-Iso­me­ra­se aus Ca­s­tel­la­ni­el­la de­fra­grans 65­Phen und Kon­struk­ti­on ei­ner De­le­ti­ons­mu­tan­te. 64pp.Ba­che­l­or­ar­beit, B.Sc. Uni­ver­si­ty of Ap­p­lied Sci­en­ces, FH Lau­sitz (2010).
Mayanna, Sathish: Di­ver­si­ty of Cul­tura­ble At­ta­ched-Li­ving Bac­te­ria from North Sea Se­di­ment. 58pp. Mas­ter the­sis, Eu­ro­pean M.Sc. Uni­ver­si­ty of Gent, Bre­men (2010).
Wang, Jun: Phy­si­cal En­rich­ment and Phy­sio­lo­gi­cal Ac­tivi­ties of Bac­te­ri­al Can­di­da­te Di­vi­si­on OP3. 55pp. Mas­ter the­sis, M.Sc. Uni­ver­si­ty of Gent, Bre­men (2010).
Weber, Johanna Katharina: A Ge­ra­ni­al De­hy­dro­ge­na­se from Ca­s­tel­la­ni­el­la De­fra­grans: Over­ex­pres­si­on in E. coli BL21 Star and In­iti­al Cha­rac­te­riza­t­i­on. 51pp. Mas­ter­ar­beit, M.Sc. Hoch­schu­le Bre­men, Bre­men (2010).

Mi­cro­sen­sor Group

Al-Najjar M.A.A, D. de Beer, B.B. Jørgensen, M. Kühl and L. Polerecky: Con­ver­si­on and Con­ser­va­ti­on of Light En­er­gy in a Pho­to­syn­the­tic Mi­cro­bi­al mat Eco­sys­tem. The ISME Jour­nal: 4, pp. 440-449. doi:10.1038/​is­mej.2009.121 (2010).  PubMed  Full Text
Barak, Y, F. Schreiber, S. H. Thorne, C. H. Contag, D. de Beer and A. Matin: Role of Nitric Oxi­de in Sal­mo­nella Ty­phi­mu­ri­um-Me­dia­ted Can­cer Cell Kil­ling. BMC Can­cer 10, pp.146-152 (2010).  PubMed  Full Text
Charette, M, C. Breier, H. Dulaiova, M. Gonneea, P. Henderson, K. Köger, A. Mulligan, A. Rao and C. Slomp: Nut­ri­ent Bio­geo­che­mis­try in Per­me­able Se­di­ments Im­pac­ted by Sub­ma­ri­ne Ground­wa­ter Di­sch­ar­ge. Gold­schmidt Con­fe­rence Ab­stracts A162 (2010).   Full Text
Ettwig, K. F, M. K. Butler, D. Le Paslier, E. Pelletier, S. Mangenot, M.M.M. Kuypers, F. Schreiber, B. E. Dutilh, J. Zedelius, D. de Beer, J. Gloerich, H. J. C. T. Wessels, T. et al: Ni­tri­te-Dri­ven An­ae­ro­bic Me­tha­ne Oxi­da­ti­on by Oxy­ge­nic Bac­te­ria. Na­tu­re 464, pp. 543-548 (2010).  PubMed
Gao, H, F. Schreiber, G. Collins, M. M. Jensen, J. E. Kostka, G. Lavik, D. de Beer, H. Y. Zhou and M.M.M. Kuypers: Ae­ro­bic De­ni­tri­fic­tai­on in Per­me­able Wad­den­sea Se­di­ments. The ISME Jour­nal 4, pp. 417-426 (2010).  PubMed  Full Text
Girnth, A.-C, S. Grünke, A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhöfer, D. de Beer and A. Boetius:A No­vel, Mat-For­ming Thiomargarita Po­pu­la­ti­on As­so­cia­ted with a Sul­fi­dic Flu­id Flow from a Deep-Sea Mud Vol­ca­no (Eas­tern Me­di­ter­ra­ne­an). En­vi­ron­men­tral Mi­co­bio­lo­gy 13(2), pp. 495-505. doi: 10.1111/​j.1462-2920.2010.02353.x (2010).  PubMed
Grünke, S., A. Lichtschlag, D. de Beer, M. Kuypers, T. Lösekann, A. Ramette, and A. Boetius: No­vel Ob­ser­va­tions of Thi­o­bac­te­ri­um, a Sul­fur-Sto­ring Gam­ma­pro­te­ob­ac­te­ri­um Pro­du­cing Ge­la­ti­nous mats. ISME-Jour­nal 4, pp. 1031–1043 (2010).  PubMed  Full Text
Heisterkamp, I. M, A. Schramm, D. de Beer and P. Stief: Ni­trous Oxi­de Pro­duc­tion As­so­cia­ted with Co­as­tal Ma­ri­ne In­ver­te­bra­tes. Ma­ri­ne Eco­lo­gy Pro­gress Se­ries 415, pp. 1-9 (2010).  MEPS  Full Text
Jogler, C, M. Niebler, W. Lin, M. Kube, G. Wanner, S. Kolinko, P. Stief, A. Beck, D. de Beer, N. Petersen, Y. Pan, R. Amann, R. Reinhard and, D. Schüler: Cul­ti­va­ti­on-In­de­pen­dent Cha­rac­te­riza­t­i­on of "Can­di­da­tus Ma­gne­tobac­te­ri­um ba­va­ri­cum" via Ul­tra­struc­tu­ral, Geo­che­mi­cal, Eco­lo­gi­cal and Me­ta­ge­no­mic Me­thods. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 2466-2478 (2010).  PubMed
Kohls K, R.M. Abed, L. Polerecky, M.E. Weber  and D. de Beer: Ha­lo­ta­xis of Cya­no­bac­te­ria in an In­terti­dal Hy­per­sa­li­ne Mi­cro­bi­al mat. En­vi­ron­men­tal Mi­cro­bio­lo­gy 3, pp. 567-575 (2010).  PubMed
Lichtschlag, A, J. Felden, V. Brüchert, A. Boetius and D. de Beer: Geo­che­mi­cal Pro­ces­ses and Che­mo­syn­the­tic Pri­ma­ry Pro­duc­tion in Dif­fe­rent Thio­tro­phic mats of the Hå­kon Mos­by Mud Vol­ca­no (Ba­rents Sea). Lim­no­lo­gy and  Ocea­no­gra­phy 55, pp. 931–949 (2010).  ASLO  Full Text
Lichtschlag, A, J. Felden, F. Wenzhofer, F. Schubotz, T. F. Ertefai, A. Boetius and D. de Beer: Me­tha­ne and Sul­fi­de Flu­xes in Per­ma­nent An­oxia: In situ Stu­dies at the Dvu­re­chens­kii Mud Vol­ca­no (Sorokin Trough, Black Sea). Geochi­mi­ca et Cos­mochi­mi­ca Acta 74, pp. 5002-5018 (2010).  ScienceDirect
Pellicer-Nacher, C., S. P. Sun, S. Lackner, A. Terada, F. Schreiber, Q. Zhou and B. F. Smets: Se­quen­ti­al Ae­ra­ti­on of Mem­bra­ne-Ae­ra­ted Bio­film Re­ac­tors for High-Rate Au­to­tro­phic Ni­tro­gen Re­mo­val: Ex­pe­ri­men­tal De­mons­tra­ti­on. En­vi­ron­men­tal Sci­ence & Tech­no­lo­gy  44, pp. 7628-7634 (2010).  PubMed
Rapaglia, J, E. DiSipio, H. Bokuniewicz , G.M. Zuppi, L. Zaggia, A. Galgaro and, A. Beck: Ground­wa­ter con­nec­tions un­der a bar­ri­er beach: A case stu­dy in the Ve­nice La­goon. Con­ti­nen­tal Shelf Re­se­arch 30, pp.119–126 (2010).  ScienceDirect
Schläppy, M.L, M. Weber, D. Mendola, F. Hoffmann and D. de Beer: He­te­ro­ge­neous Oxy­ge­na­ti­on Re­sul­ting from Ac­tive and Pas­si­ve Flow in two Me­di­ter­ra­ne­an Spon­ges, Dys­i­dea ava­ra and Chon­d­ro­sia reni­for­mis. Lim­no­lo­gy and Ocea­no­gra­phy 55, pp. 1289-1300.  ASLO  Full Text
Schläppy, M. L., S. I. Schöttner, G. Lavik, M. M. M. Kuypers, D. de Beer and F. Hoffmann: Evi­dence of Ni­tri­fi­ca­ti­on and De­ni­tri­fi­ca­ti­on in High and Low Mi­cro­bi­al Ab­un­dance Spon­ges. Ma­ri­ne Bio­lo­gy 157, pp. 593-602 (2010).  PubMed  Full Text
Schoon, R., A. Bissett and D. de Beer: Resi­li­ence of Pore-Wa­ter Che­mis­try and Cal­ci­fi­ca­ti­on in Pho­to­syn­the­tic Zo­nes of Cal­ci­fiy­ing Se­di­ments. Lim­no­lo­gy and Ocea­no­gra­phy 55, pp. 377-385 (2010).  ASLO  Full Text
Schreiber, F: Bak­te­ri­en bil­den Stick­stoff­mon­oxid und Lach­gas im Zahn­be­lag. Zahn­arzt und Pra­xis 5, pp. 350-352 (2010).
Schreiber, F, P. Stief, A. Gieseke, I. M. Heisterkamp, W. Verstraete, D. de Beer and P. Stoodley: De­ni­tri­fi­ca­ti­on in Hu­man Den­tal Plaque. BMC Bio­lo­gy 8(24), pp. 1-11 (2010).  PubMed  Full Text
Stief, P, A. Behrendt, G. Lavik and D. de Beer: Com­bi­ned Gel Pro­be and Iso­to­pe La­be­ling Tech­ni­que for Mea­su­ring Dis­si­mi­la­to­ry Ni­tra­te Re­duc­tion to Am­mo­ni­um in Se­di­ments at Mil­li­me­ter-Le­vel Re­so­lu­ti­on. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 76, pp. 6239-6247 (2010).  PubMed  Full Text
Stief, P, L. Polerecky, M. Poulsen and A. Schramm: Con­trol of Ni­trous Oxi­de Emis­si­on from Chi­ro­no­mus plu­mo­sus Lar­vae by Ni­tra­te and Tem­pe­ra­tu­re. Lim­no­lo­gy and Ocea­no­gra­phy 55, pp. 872-884 (2010).  ASLO  Full Text
Stief, P. and A. Schramm: Re­gu­la­ti­on of Ni­trous Oxi­de Emis­si­on As­so­cia­ted with Bent­hic In­ver­te­bra­tes. Freshwa­ter Bio­lo­gy 55, pp. 1647-1657 (2010).  Wiley
Schwermer, C. U, T.G. Ferdelman, P. Stief, A. Gieseke, N. Rezakhani, J. Van Rijn, D. de Beer and A. Schramm: Ef­fect of Ni­tra­te on Sul­fur Trans­for­ma­ti­ons in Sul­fi­do­ge­nic Sludge of a Ma­ri­ne Aqua­cul­tu­re Bio­fil­ter. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 72, pp. 476-484 (2010).  PubMed
Volkenborn, N, L. Polerecky, D. Wethey and S.A. Woodin: Oscil­la­to­ry Po­re­wa­ter Bioad­vec­tion in Ma­ri­ne Se­di­ments In­du­ced by Hy­drau­lic Ac­tivi­ties of Are­ni­co­la Ma­ri­na. Lim­no­lo­gy and Ocea­no­gra­phy 55, pp. 1231-1247 (2010).  ePIC  Full Text
von Ohle, C, A. Gieseke, L. Nistico, E.M. Decker, D. de Beer and P. Stoodley: Real Time Mi­cro­sen­sor Mea­su­re­ment of Lo­cal Me­ta­bo­lic Ac­tivi­ties in Ex Vivo Den­tal Bio­films Trea­ted with Chlor­he­xi­di­ne. Ap­p­lied En­vi­ron­men­tal Mi­cro­bio­lo­gy 76, pp. 2326 (2010).  PubMed   Full Text
Wangpraseurt, D, L. Polerecky, M. Weber, D. de Beer and M.M. Nugues: In Situ Cha­rac­te­riza­t­i­on of Oxy­ge­ne Mi­cro­en­vi­ron­ments in Co­ral alga In­ter­ac­tions. PLo­SO­ne, 7, e31192 (2010)  PLoSOne  Full Text
Zedelius, J., R. Rabus, O. Grundmann, I. Werner, D. Brodkorb, F. Schreiber, P. Ehrenreich, A. Behrends, H. Wilkes, M. Kube, R. Reinhardt, and F. Widdel: Al­ka­ne De­gra­da­ti­on by a New Type of De­ni­tri­fy­ing Bac­te­ri­um with pos­si­ble In­vol­ve­ment of the Elec­tron Ac­cep­tor in Sub­stra­te Ac­tiva­ti­on. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 3(1), pp.125–135. doi: 10.1111/​j.1758-2229.2010.00198.x (2010).  PubMed  Full Text
Zedelius, J., and F. Schreiber: An­ae­ro­be Me­than­oxi­da­ti­on durch oxy­ge­ne Bak­te­ri­en. Bio­fo­rum 33, pp. 28-30 (2010).
M.Sc theses
Havemeyer, Sandra: Bac­te­ri­al Po­ly­phos­pha­te Sto­r­a­ge and Phos­pha­te Re­lease. 35pp. Mas­ter the­sis, MSc. MAR­MIC Bre­men, Bre­men (2010).
Larsen, Lone Heimann: Mi­cro­bio­lo­gy of Ni­trous Oxi­de Pro­duc­tion from the Ma­ri­ne Mus­sel My­ti­lus edu­lis (Lin­na­eus). 81pp. Mas­ter the­sis, MSc.  Aar­hus Uni­ver­si­ty, Den­mark (2010).
Nitsch, Jana Lena:Ni­trat­auf­nah­me, -spei­che­rung und -ver­brauch von Dia­to­meen.105 pp. Di­plo­ma, Uni­ver­si­ty of Ol­den­burg, Bre­men (2010).
Wangpraseurt, Daniel: In situ Cha­rac­te­riza­t­i­on of Oxy­gen Mi­cro­en­vi­ron­ments in Co­ral- al­gal In­ter­ac­tions. 25pp. Mas­ter the­sis, MSc. Uni­ver­si­ty of Bre­men, Bre­men, Ger­ma­ny (2010).
Wiedling, Johanna: Bio­geo­che­mi­cal In­ves­ti­ga­ti­ons on a Shal­low-Wa­ter Me­tha­ne Seep in the Me­di­ter­ra­ne­an Sea. 37pp. Ba­che­lor the­sis, BSc. Uni­ver­si­ty of Greifs­wald, Greifs­wald (2010).
Ph.D theses
Al-Najjar, Mohammad Ahmad A: Flow of Light En­er­gy in Bent­hic Pho­to­syn­the­tic Mi­cro­bi­al mats. 153pp. Dis­ser­ta­ti­on Uni­ver­si­ty of Bre­men, Bre­men, Ger­ma­ny (2010).

De­part­ment of Mole­cu­lar Eco­lo­gy

Abed RM, N. Musat, F. Musat, M. Mußmann: Struc­tu­re of Mi­cro­bi­al Com­mu­nities and Hy­dro­c­ar­bon-De­pen­dent Sul­fa­te Re­duc­tion in the An­oxic Lay­er of a Pol­lu­ted Mi­cro­bi­al mat. In: Ma­ri­ne Pol­lu­ti­on Bul­le­tin 62, pp. 539-546 (2010).  PubMed
Alonso, C, P.R. Gómez-Pereira, A. Ramette, L. Ortega, B.M. Fuchs and R. Amann: Mul­ti­le­vel Ana­ly­sis of the Bac­te­ri­al Di­ver­si­ty along the En­vi­ron­men­tal Gra­di­ent Rí­o de la Pla­ta–South At­lan­tic Oce­an. In: Aqua­tic Mi­cro­bi­al Eco­lo­gy 61, pp. 57-72. doi: 10.3354/​ame01439 (2010).  AME
Aquilina, A,N.J. Knab, K. Knittel, G. Kaur, A. Geissler, S.P. Kelly, H.  Fossing, C.S. Boot, R.J. Parkes, R.A. Mills, A. Boetius, J.R. Lloyd, R.D. Pancost: Bio­mar­ker In­di­ca­tors for An­ae­ro­bic Oxi­di­zers of Me­tha­ne in Bra­ckish-Ma­ri­ne Se­di­ments with Dif­fu­si­ve Me­tha­ne Flu­xes. In: Or­ga­nic Bio­che­mis­try 41, pp. 414-426 (2010).  ScienceDirect
Arnds, J, K. Knittel, U. Buck, M. Winkel, R. Amann: De­ve­lop­ment of a 16S rRNA- Tar­ge­ted Pro­be Set for Ver­ru­co­mi­cro­bia and its Ap­p­li­ca­ti­on for Fluo­re­scence in Situ Hy­bri­di­za­t­i­on in a Hu­mic Lake. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 33, pp. 139-148 (2010).  PubMed
Augspurger, C,C. Karwautz, M. Mussmann, H. Daims, T.J. Battin: Dri­vers of Bac­te­ri­al Co­lo­niza­t­i­on Pat­terns in Stream Bio­films. In: FEMS Mi­cro­bi­ol Ecol. 72(1), pp. 47-57 (2010).  PubMed
Boetius, A. and K. Knittel: Ha­bi­tats of An­ae­ro­bic Me­tha­ne Oxi­di­zers. In Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy. Part 21, pp. 2193-2202, Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, K. N. Tim­mis (ed.), doi: 10.1007/​978-3-540-77587-4_159 (2010).  Springer
Girnth, A.C, S. Grünke, I.A. Lichtschlag, J. Felden, K. Knittel, F. Wenzhöfer, D. de Beer, A. Boetius: A No­vel, Mat-For­ming Thiomargarita Po­pu­la­ti­on As­so­cia­ted with a Sul­fi­dic Flu­id Flow from a Deep-Sea Mud Vol­ca­no. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13 (2), pp. 495-505. doi:10.1111/​j.1462-2920.2010.02353 (2010).  PubMed
Gomez-Pereira, P, C. Alonso, M. Oliver, J. van Beusekom, and B. Fuchs:  Dis­tinct Flav­o­bac­te­ri­al Com­mu­nities in Con­tras­ting Wa­ter Mas­ses of the North At­lan­tic Oce­an. In: ISME Jour­nal 4, pp. 472–487 (2010).  PubMed  Full Text
Jogler, C, M. Niebler, W. Lin, M. Kube, G. Wanner, S. Kolinko, P. Stief, A.J. Beck, D. de Beer, N. Petersen, Y. Pan, R. Amann, R. Reinhard, and D. Schüler.:Cul­ti­va­ti­on In­de­pen­dent Cha­rac­te­riza­t­i­on of Candidatus Magnetobacterium bavaricum Via Ul­tra­struc­tu­ral, Geo­che­mi­cal, Eco­lo­gi­cal and Me­ta­ge­no­mic Me­thods. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 2466-2478 (2010).  PubMed
Julies, E, B. Fuchs, C. Arnosti, and V.  Brüchert: Or­ga­nic Car­bon De­gra­da­ti­on in An­oxic Or­ga­nic-Rich Shelf Se­di­ments: Bio­geo­che­mi­cal Ra­tes and Mi­cro­bi­al Ab­un­dance. In: Geo­mi­cro­bio­lo­gy Jour­nal 27, pp. 303-314 (2010).  TFO
Knittel, K. and A. Boetius:An­ae­ro­bic Me­tha­ne Oxi­di­zers. In Hand­book of Hy­dro­c­ar­bon and Li­pid Mi­cro­bio­lo­gy. Part 19, pp. 2023-2032,  Sprin­ger-Ver­lag Ber­lin, Hei­del­berg, K. N. Tim­mis (ed.), doi:10.1007/​978-3-540-77587-4_147 (2010).  Springer
Lenk, S, J. Arnds, K. Zerjatke, N. Musat, R. Amann, M. Mußmann: No­vel Groups of Gam­ma­pro­te­ob­ac­te­ria Ca­ta­ly­se Sul­fur Oxi­da­ti­on and Car­bon Fixa­ti­on in a Co­ast al, In­terti­dal Se­di­ment. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 13(3), pp. 758-774. doi: 10.1111/​j.1462-2920.2010.02380.x (2010).  PubMed
Meyerdierks, A., and F.O. Gloeckner: Me­ta­ge­no­me Ana­ly­sis. In: In­tro­duc­tion to Ma­ri­ne Ge­no­mics. pp. 33-71, Sprin­ger-Ver­lag Hei­del­berg, Cock, J.M., Tes­s­mar-Rai­b­le, K., Boy­en, C., and Vi­ard, F (eds.) (2010).
Meyerdierks, A, M. Kube, L. Kostadinov, H. Teeling, F.O. Glöckner, R. Reinhardt and R. Amann: Me­ta­ge­no­me and mRNA Ex­pres­si­on Ana­ly­ses of An­ae­ro­bic Me­tha­notro­phic Ar­chaea of the ANME-1 Group. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 422-439 (2010).  PubMed
Moraru, C, P. Lam, B.M. Fuchs, M.M.M. Kuypers and R. Amann: Ge­ne­FISH – an in Situ Tech­ni­que for Lin­king Gene Pre­sence and Cell Iden­ti­ty in En­vi­ron­men­tal Mi­cro­or­ga­nisms. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 3057-3073 (2010).  PubMed
Moraru, C, G. Moraru, B.M. Fuchs and R. Amann: Con­cepts and Soft­ware for a Ra­tio­nal De­sign of Po­ly­nu­cleo­ti­de Pro­bes. In:  En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 3, pp. 69–78. doi:10.1111/​j.1758-2229.2010.00189 (2010).  PubMed
Mussmann, M,  S. Lenk, J. Arnds, K. Zerjatke, C. Moraru and R. Amann: No­vel Groups of Sul­fur Oxi­di­zing Bac­te­ria in Co­as­tal Se­di­ments. Gold­schmidt Con­fe­rence Ab­stracts A741 (2010).  PubMed
Orcutt, B.N, S.B. Joye, S. Kleindienst, K. Knittel, A. Ramette, A. Reitz, V. Samarkin, T. Treude, A. Boetius: Im­pact of Na­tu­ral Oil and Hig­her Hy­dro­c­ar­bons on Mi­cro­bi­al Di­ver­si­ty, Dis­tri­bu­ti­on, and Ac­tivi­ty in Gulf of Me­xi­co Cold-Seep Se­di­ments. Deep-Sea Re­se­arch Part II 57, pp. 2008-2021 (2010).  ScienceDirect
Pena, A., H. Teeling, J. Huerta-Cepas, F. Santos, P. Yarza, J. Brito-Echeverria, M. Lucio, P. Schmitt-Kopplin, I. Meseguer, C. Schenowitz, C. Dossat, V. Barbe, J. Dopazo,  R. Rossello Mora, M. Schüler, F. O. Glöckner, R. Amann, T. Galbadon, and J. Anton.: Fine-Sca­le Evo­lu­ti­on: Ge­no­mic, Phe­no­ty­pic and Eco­lo­gi­cal Dif­fe­ren­tia­ti­on in Two Salinibacter rubber Strains. In: ISME Jour­nal 4, pp. 882-895 (2010).  PubMed  Full Text
Schreiber, L, T. Holler, K. Knittel, A. Meyerdierks  and R. Amann: Iden­ti­fi­ca­ti­on of the Do­mi­nant Sul­fa­te-Re­du­cing Bac­te­ri­al Part­ner of An­ae­ro­bic Me­tha­notro­phs of the ANME-2 Cla­de. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp.2327-2340 (2010).  PubMed
Serrano, W., R. Amann, R. Rossello-Mora, and U. Fischer: Eva­lua­ti­on of the Use of Mul­ti­lo­cus Se­quence Ana­ly­sis (MLSA) to Re­sol­ve Ta­xo­no­mic Con­flicts with the Ge­nus Ma­rich­ro­ma­ti­um . In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 33, pp. 116-121 (2010).  PubMed
Simonato, F, P.R Gómez-Pereira, B.M. Fuchs and R. Amann: Bac­te­rio­plank­ton Di­ver­si­ty and Com­mu­ni­ty Com­po­si­ti­on in the Sou­thern La­goon of Ve­nice. Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 33, pp.128-138 (2010).  PubMed
Yarza, P, W. Ludwig, J. Euzeby, R. Amann, K.-H. Schleifer, F.O. Glöckner, and R. Rossello Mora: Up­date of the All-Spe­cies Li­ving Tree Pro­ject Ba­sed on 16S and 23S rRNA Se­quence Ana­ly­ses. In: Sys­te­ma­tic and Ap­p­lied Mi­cro­bio­lo­gy 33, pp. 291-299 (2010).  PubMed
M.Sc. theses
Bennke, Christin: Dis­tri­bu­ti­on of Sub­groups of Ma­ri­ne Bac­te­ro­ide­tes in the North At­lan­tic Oce­an. 81pp. Di­plo­ma The­sis, Uni­ver­si­ty of Greifs­wald (2010).
Monsees, Hendrik: Ein­fluss von Licht auf die Ni­tri­fi­ka­ti­on mi­kro­bi­el­ler Bio­fil­me auf Le­ben­den Stei­nen in ma­ri­nen Zier­fi­schauf­zucht­an­la­gen. 110pp. Di­plo­ma the­sis, Uni­ver­si­ty of Bre­men, Bre­men (2010).
Nitzsche, Katja: Mi­cro­bi­al Di­ver­si­ty of Hydro­ther­mal­ly In­flu­en­ced Ar­se­nic-Rich Se­di­ments of the Co­ast of Mi­los Is­land, Greece. 121pp. Di­plo­ma The­sis, TU Berg­aka­de­mie Frei­berg, (2010).
Ruff, Emil: Mi­cro­bi­al Com­mu­nities of Ma­ri­ne Me­tha­ne Seeps at Hi­kur­an­gi Mar­gin (New Ze­a­land). 91pp. Di­plo­ma The­sis, Uni­ver­si­ty of Stutt­gart (2010).
Torres Monroy, Ingrid: Growth Cha­rac­te­ris­tics of Anero­bic An­oxy­ge­nic Pho­to­tro­phic Strains of the NOR5/​OM60 Cla­de. Mas­ter the­sis (Mar­Mic), 43pp. Uni­ver­si­ty of Bre­men, Bre­men (2010).
Ph.D. theses
Gomez Pereira, Paola Rocio: Ma­ri­ne Bac­te­ro­ide­tes: Dis­tri­bu­ti­on Pat­terns and Role in the De­gra­da­ti­on of Or­ga­nic Mat­ter. 317pp. Dis­ser­ta­ti­on  Uni­ver­si­ty of Bre­men, Bre­men (2010).
Moraru, Cristina: Fluo­re­scence in Situ Hy­bri­di­za­t­i­on of Ge­nes in En­vi­ron­men­tal Mi­cro­bio­lo­gy. 181pp. Dis­ser­ta­ti­on Uni­ver­si­ty of Bre­men, Bre­men (2010).
Schauer, Regina: Di­ver­si­ty and Func­tion of Mi­cro­bi­al Com­mu­nities in Se­di­ments from Dif­fe­rent Deep-Sea Ha­bi­tats. 184pp. Dis­ser­ta­ti­on, Uni­ver­si­ty of Bre­men, Bre­men (2010).
Schreiber, Lars: As­ses­sing the Ge­ne­tic Po­ten­ti­al of Un­cul­ti­va­ted Sul­fa­te-Re­du­cing Bac­te­ria. 150pp. Dis­ser­ta­ti­on, Uni­ver­si­ty of Bre­men, Bre­men (2010).

Nut­ri­ent Group

Contreras, S, C. B. Lange, S. Pantoja, G. Lavik, D. Rincón-Martí­nez, and M. M. M. Kuypers: A Rai­ny Nort­hern Ata­ca­ma De­sert Du­ring the Last In­ter­gla­ci­al. In: Geo­phy­si­cal Re­se­arch Let­ters 37,L23612, pp. 1-5. doi: 10.1029/​2010GL045728 (2010).  Wiley  Full Text
Ettwig, K. F, M. K. Butler, D. Le Paslier, E. Pelletier, S. Mangenot, M.M.M. Kuypers, F. Schreiber, B. E. Dutilh, J. Zedelius, D. de Beer, J. Gloerich, H.J.C.T. Wessels, et al: Ni­tri­te-Dri­ven An­ae­ro­bic Me­tha­ne Oxi­da­ti­on by Oxy­ge­nic Bac­te­ria. In: Na­tu­re 464, pp. 543-548 (2010).  PubMed
Gao, H, F. Schreiber, G. Collins, M. M. Jensen, J. E Kostka, G. Lavik, D. de Beer, H.-Y. Zhou and M. M. M. Kuypers: Ae­ro­bic de­ni­tri­fi­ca­ti­on in per­me­able Wad­den Sea se­di­ments. In: ISME Jour­nal 4, pp. 417-426 (2010).  PubMed  Full Text
Gihring, T. M., G. Lavik, M. M. M. Kuypers and J. E. Kostka: Di­rect De­ter­mi­na­ti­on of Ni­tro­gen Cy­cling ra­tes and Pa­thways in Arc­tic Fjord Se­di­ments (Sval­bard, Nor­way). In: Lim­no­lo­gy and Ocea­no­gra­phy 55, pp. 740–752 (2010).  ASLO  Full Text
Grünke, S., A. Lichtschlag, D. de Beer, M.M.M. Kuypers, T. Lösekann-Behrens, A. Ramette and A. Boetius: No­vel Ob­ser­va­tions of Thi­o­bac­te­ri­um, a Sul­fur-Sto­ring Gam­ma­pro­te­ob­ac­te­ri­um Pro­du­cing Ge­la­ti­nous mat. In: ISME Jour­nal 4, pp. 1031–1043. doi: 10.1038/​is­mej.2010.23 (2010).  PubMed  Full Text
Kraal, P.C.P. Slomp, A. Forster and M.M.M. Kuypers: Phos­pho­rus Cy­cling from the Mar­gin to Abys­sal Depths in the Pro­to-At­lan­tic Du­ring Ocea­nic An­oxic Event 2. In: Pa­laeo­geo­gra­phy, Pa­laeo­cli­ma­to­lo­gy, Pa­laeo­e­co­lo­gy 295, pp. 42-54 (2010).  ScienceDirect
Lam, P. and M.M.M. Kuypers: Mi­cro­bi­al Ni­tro­gen Cy­cling Pro­ces­ses in Oxy­gen Mi­ni­mum Zo­nes. An­nu­al Re­view of Ma­ri­ne Sci­ence 3, pp. 317-345. doi:10.1146/​annu­rev-ma­ri­ne-120709-142814 (2010).  PubMed
Moraru, C, P. Lam, B. M. Fuchs, M.M M. Kuypers and R. Amann: Ge­ne­FISH – an In Situ Tech­ni­que for Lin­king Gene Pre­sence and Cell Iden­ti­ty in En­vi­ron­men­tal Mi­cro­or­ga­nisms. In: En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 3057–3073 (2010).  PubMed
Ploug, H, Musat N., Adam B., Moraru C.L., Lavik G., Vagner T., Bergman B and M.M.M. Kuypers: Car­bon and Ni­tro­gen Flu­xes As­so­cia­ted with the Cya­no­bac­te­ri­um Apha­ni­zo­me­non Sp. in the Bal­tic Sea. In: The ISME Jour­nal 4, pp.1215–1223 (2010).  PubMed  Full Text
Rattray, J. E, J. van de Vossenberg, A. Jaeschke, E. C. Hopmans, S. G. Wakeham, G. Lavik, M.M.M. Kuypers, M. Strous, M. S.M. Jetten, S. Schouten and J. S. Sinninghe Damsté: Im­pact of Tem­pe­ra­tu­re on Lad­de­ra­ne Li­pid Dis­tri­bu­ti­on in Anam­m­ox Bac­te­ria. In: Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy 76, pp. 1596-1603 (2010).  PubMed  Full Text
Schläppy, M.-L, S. I. Schöttner, G. Lavik, M. M. M. Kuypers, D. de Beer and F. Hoffmann:  Evi­dence for Ni­tri­fi­ca­ti­on and De­ni­tri­fi­ca­ti­on in High and Low Mi­cro­bi­al Ab­un­dance Spon­ges. In: Ma­ri­ne Bio­lo­gy 157, pp. 593-602 (2010).  PubMed  Full Text
M.Sc theses
Krupke, Andreas: Nut­ri­ent and Car­bon Trans­fer Bet­ween Sul­fa­te Re­du­cing and Pho­to­tro­phic Sul­fur Bac­te­ria Wi­t­hin the Che­mo­cli­ne of the Mero­mic­tic Lake Ca­da­g­no, Swit­z­er­land (2010).
Marchant, Hannah: The Ef­fects of Oce­an Aci­di­fi­ca­ti­on on Ni­tro­gen Cy­cling in Per­me­able Co­as­tal Se­di­ments.70pp. Mas­ter of Sci­ence, MSc. Max Planck Re­se­arch School of Ma­ri­ne Mi­cro­bio­lo­gy  and the Uni­ver­si­ty of Bre­men, Bre­men (2010).
Sokoll, Sarah: Pro­ces­ses of Ni­tro­gen Loss on the Ma­kran Shelf in the Ara­bi­an Sea. 78pp. Mas­ter of Sci­ence, MSc. Uni­ver­si­ty of Ros­tock and Max-Planck-In­sti­tu­te for Ma­ri­ne In­sti­tu­te for Bio­sci­en­ces-Ma­ri­ne Bio­lo­gy Mi­cro­bio­lo­gy Bre­men (2010).

Mi­cro­bi­al Fit­ness Group

Geelhoed, J.S, H.V.M Hamelers and A.J.M Stams: Electri­ci­ty-Me­dia­ted Bio­lo­gi­cal Hy­dro­gen Pro­duc­tion. Cur­rent Opi­ni­on in Mi­cro­bio­lo­gy 13, pp. 307–315. doi:10.1016/​j.mib.2010.02.002 (2010).  PubMed
Medema, M.H., M. Zhou, S .van Hijum, J. Gloerich, H. Wessels, R.J. Siezen and M. Strous: A Pre­dic­ted Phy­si­co­che­mi­cal­ly Dis­tinct Sub-Pro­teo­me As­so­cia­ted with the In­tra­cel­lu­lar Or­ga­nel­le of the Anam­m­ox Bac­te­ri­um Kue­n­e­nia Stutt­gar­ti­en­sis. BMC Ge­no­mics 11, pp. 1-14. doi: 10.1186/​1471-2164-11-299 (2010).  PubMed  Full Text
Van Niftrik, L, M. van Helden, S. Kirchen, E.G. van Donselaar, H.R. Harhangi, R.I. Webb, A. Fuerst,  J.M.H. Op den Camp, M.S.M. Jetten and M. Strous: In­tra­cel­lu­lar Lo­ca­liza­t­i­on of Mem­bra­ne-Bound AT­Pa­ses in the Com­part­ment­a­li­zed Anam­m­ox Bac­te­ri­um Candidatus Kuenenia stuttgartiensis. Mole­cu­lar Mi­cro­bio­lo­gy 77(3), pp. 701–715. doi:10.1111/​j.1365-2958.2010.07242.x (2010).  PubMed  Full Text

Sym­bio­sis Group

Perner, M,  J.M. Petersen, F. Zielinski, H.H.Gennerich and R. Seifert: Geo­che­mi­cal Cons­traints on the Di­ver­si­ty and Ac­tivi­ty­of H2-Oxi­di­zing Mi­cro­or­ga­nisms in dif­fu­se Hydro­ther­mal fluids from a ba­salt- and an ul­tra­f­a­mic-hosted vent. FEMS Mi­cro­bio­lo­gy Eco­lo­gy 74(1), pp. 55–71, Gary King (ed.). doi: 10.1111/​j.1574-6941.2010.00940.x (2010).  PubMed
Petersen, J.M, A. Ramette, C. Lott, M.A. Cambon Bonavita, M. Zbinden and N. Dubilier: Dual Sym­bio­sis of the Vent Shrimp Ri­mi­ca­ris Exo­cu­la­ta with Fil­amen­tous Gam­ma- and Ep­si­lon­pro­te­ob­ac­te­ria at four Mid-At­lan­tic Ridge Hydro­ther­mal Vent Fiel­ds. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp.  2204-2218. doi:10.1111/​j.1462-2920.2009.02129.x (2010).  PubMed
Ruehland, C. and N. Dubilier: Gam­ma- and Ep­si­lon­pro­te­ob­ac­te­ri­al Ec­to­sym­bi­onts of a Shal­low-Wa­ter Ma­ri­ne Worm are Re­la­ted to Deep-Sea Hydro­ther­mal Vent Ec­to­sym­bi­onts. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 2312–2326. doi:10.1111/​j.1462-2920.2010.02256.x (2010).  PubMed
Verna, C, A. Ramette, H. Wiklund, T.G. Dahlgren, A.G. Glover, F. Gaill and N. Dubilier: High Sym­bi­ont Di­ver­si­ty in the Bone-Ea­ting Worm Ose­dax mu­cof­lo­ris from Shal­low Wha­le-falls in the North At­lan­tic. En­vi­ron­men­tal Mi­cro­bio­lo­gy 12, pp. 2355–2370. doi: 10.1111/​j.1462-2920.2010.02299.x (2010).  PubMed
Zielinski, F. and N. Dubilier: Der Eu­ka­ryo­ten-Zell­kern als öko­lo­gi­sche Ni­sche für Bak­te­ri­en. Bio­Spek­trum 16, pp.12-15 (2010).  Full Text
Back to Top