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Pu­bli­ka­tio­nen 2015

Pu­bli­ka­tio­nen 2015

Mole­cu­lar Eco­lo­gy Group

Bizic-Ionescu, M., M. Zeder, D. Ionescu, S. Orlic, B.M. Fuchs, H.-P. Grossart, and R. Amann: Com­par­si­on of bac­te­ri­al com­mu­nities on lim­nic ver­sus co­as­tal ma­ri­ne par­ti­cles re­veals pro­found dif­fe­ren­ces in co­lo­niza­t­i­on. En­vi­ron. Mi­cro­bi­ol., 17:3500-3514. (2015)  PubMed
Elling F.J., M. Könneke, M. Mußmann, A. Greve, K.U. Hinrichs: In­flu­ence of tem­pe­ra­tu­re, pH, and sal­in­i­ty on mem­bra­ne li­pid com­po­si­ti­on and TEX 86 of ma­ri­ne plank­to­nic thau­m­ar­chae­al iso­la­tes. Geochi­mi­ca et Cos­mochi­mi­ca Acta 171, 238-255 (2015)  ScienceDirect
Hahnke, R.L., C.M. Bennke, B.M. Fuchs, A.J. Mann, E. Rhiel, H. Teeling, R. Amann, and J. Harder: Di­lu­ti­on cul­ti­va­ti­on of ma­ri­ne he­te­ro­tro­phic bac­te­ria ab­un­dant af­ter a spring phy­to­plank­ton bloom in the North Sea. En­vi­ron. Mi­cro­bi­ol., 17:3515-3526. (2015)   PubMed
Korlević, M., P. Pop Ristova, R. Garić, R. Amann, and S. Orlić: Bac­te­ri­al di­ver­si­ty in the South Adria­tic Sea du­ring a strong deep win­ter con­vec­tion year. Appl. En­vi­ron. Mi­cro­bi­ol., 81:1715-1726. (2015)  PubMed  Full Text
Krupke, A., W. Mohr, J. LaRoche, B.M. Fuchs, R.I. Amann, and M.M.M. Kuypers: The ef­fect of nut­ri­ents on car­bon and ni­tro­gen fixa­ti­on by the UCYN-A-hap­to­phy­te sym­bio­sis. ISME J., 9:1635-1647. (2015)  PubMed  Full Text
Lucas, J., Wichels, A., Teeling, H., Chafee, M., Scharfe, M., Gerdts, G.: An­nu­al dy­na­mics of North Sea bac­te­rio­plank­ton: sea­so­nal va­ria­bi­li­ty su­per­im­po­ses short-term va­ria­ti­on. FEMS Mi­cro­bi­ol Ecol., 91:DOI:10.1093/​fem­sec/​fi­v099. (2015)  PubMed  Full Text
Pizzetti, I.; Schulz, F.; Tyml, T.; Fuchs, B. M.; Amann, R.; Horn, M.& Fazi, S.: Chla­my­di­al sea­so­nal dy­na­mics and iso­la­ti­on of “Can­di­da­tus Nep­tu­noch­la­my­dia ve­xil­li­fe­rae” from a Tyr­rhe­ni­an co­as­tal lake. En­vi­ron­men­tal Mi­cro­bio­lo­gy, No­vem­ber 1, (2015)  PubMed
Pjevac, P., M. Korlević, J. Berg, E¬. Bura-Nakic, I. Ciglenecki, R. Amann, and S. Orlić: Com­mu­ni­ty shift from pho­to­tro­phic to che­mo­tro­phic sul­fi­de oxi­da­ti­on fol­lo­wing an­oxic ho­lo­mi­xis in a stra­ti­fied sea­wa­ter lake. Appl. En­vi­ron. Mi­cro­bi­ol., 81:298-308. (2015)  ASM  Full Text
Ruff, SE ; Biddle, JF ; Teske, AP ; Knittel, K ; Boetius, A ; Ramette: A Glo­bal dis­per­si­on and lo­cal di­ver­si­fi­ca­ti­on of the me­tha­ne seep mi­cro­bio­me. Pro­cee­dings of the na­tio­nal aca­de­my of sci­en­ces of the United Sta­tes of Ame­ri­ca 112: 4015-4020 (2015)  PNAS  Full Text
Rossello-Mora, R. And R. Amann: Past and fu­ture spe­cies de­fi­ni­ti­ons for Bac­te­ria and Ar­chaea. Sys­tem. Appl. Mi­cro­bi­ol., 38:209-216. (2015)  PubMed
Schleifer, K.H., R. Amann, and R. Rossello-Mora: Ta­xo­no­my in the age of ge­no­mics. Sys­tem. Appl. Mi­cro­bi­ol., 38:207-208. (2015)  PubMed
Serrano, W., J. Schruebbers, R. Amann, and U. Fischer: Al­loch­ro­ma­ti­um hum­bold­tia­num sp. nov., iso­la­ted from soft co­as­tal se­di­ments. Int. J. Sys­tem. Evol. Mi­cro­bi­ol., (2015)  PubMed
Thiele, S., B. Fuchs, R. Amann, and M. Iversen: Co­lo­niza­t­i­on in the pho­tic zone and sub­se­quent chan­ges du­ring sin­king de­ter­mi­ned bac­te­ri­al com­mu­ni­ty com­po­si­ti­on in ma­ri­ne snow. Appl. En­vi­ron. Mi­cro­bi­ol., 81:1463-1471. (2015)  ASM
Xing, P., R.L. Hahnke, F. Unfried, S. Markert, S. Huang, T. Barbyron, J. Harder, D. Becher, T. Schweder, F.O. Glöckner, R.I. Amann, and H. Teeling: Ni­ches of two po­ly­sac­cha­ri­de-de­gra­ding Po­la­ri­bac­ter iso­la­tes from the North Sea du­ring a spring dia­tom bloom. ISME J., 9:1410-1422. (2015)  PubMed  Full Text
Yamaguchi, T., B.M. Fuchs, R. Amann, S. Kawakami, K. Kubota, M. Hatamoto, and T. Yamaguchi: Ra­pid and sen­si­ti­ve iden­ti­fi­ca­ti­on of ma­ri­ne bac­te­ria by an im­pro­ved in situ DNA hy­bri­di­za­t­i­on chain re­ac­tion (quickHCR-FISH). Sys­tem. Appl. Mi­cro­bi­ol., 38:400-405. (2015)  PubMed

Ma­ri­ne Geo­che­mis­try Group

Arrieta J.M., Mayol E., Hansman R.L., Herndl G.J., Dittmar T. and Duarte C.M.: Re­s­pon­se to com­ment on “Di­lu­ti­on li­mits dis­sol­ved or­ga­nic car­bon uti­liza­t­i­on in the deep oce­an”. Sci­ence 350, 6267, 1483-b, 1-2. (2015)  PubMed
Arrieta J.M., Mayol E., Hansman R.L., Herndl G.J., Dittmar T. and Duarte C.M.: Di­lu­ti­on li­mits dis­sol­ved or­ga­nic car­bon uti­liza­t­i­on in the deep oce­an. Sci­ence 348, 6232, 331-333. (2015)  PubMed
Benavides M., Moisander P.H., Berthelot H., Dittmar T., Grosso O. and Bonnet S.: Me­so­pel­agic N2 fixa­ti­on re­la­ted to or­ga­nic mat­ter com­po­si­ti­on in the So­lo­mon and Bis­marck Seas (Sou­thwest Pa­ci­fic). PLOS One. 10 (12) e014377, 1-19. (2015)  PubMed  Full Text
Chmiel H., Niggemann J., Kokic J., Ferland M.-E., Dittmar T., Sobek S.: Un­cou­p­led or­ga­nic mat­ter bu­ri­al and qua­li­ty in bo­re­al lake se­di­ments over the Ho­lo­ce­ne. Jour­nal of Geo­phy­si­cal Re­se­arch – Bio­geo­sci­en­ces 9, 1751-1763. (2015)  Wiley
De la Cruz F., Dittmar T., Niggemann J., Osburn C. and Barlaz M.A.: Eva­lua­ti­on of cop­per oxi­de oxi­da­ti­on for quan­ti­fi­ca­ti­on of li­gnin in mu­ni­ci­pal so­lid was­te. En­vi­ron­men­tal En­gi­nee­ring Sci­ence 32 (6), 486-496. (2015)  Liebertpub.
Gomez-Saez G.V., Riedel T., Niggemann J., Pichler T., Dittmar T. and Bühring S.I.: In­ter­ac­tion bet­ween iron and dis­sol­ved or­ga­nic mat­ter in a ma­ri­ne shal­low hydro­ther­mal sys­tem off Do­mi­ni­ca Is­land (Les­ser An­til­les). Ma­ri­ne Che­mis­try 177, 677-686. (2015)  Sciencdirect
Hansman R.L., Dittmar T. and Herndl G.J.: Con­ser­va­ti­on of dis­sol­ved or­ga­nic mat­ter mole­cu­lar com­po­si­ti­on du­ring mi­xing of the deep wa­ter mas­ses of the nor­theast At­lan­tic Oce­an. Ma­ri­ne Che­mis­try 177, 288-297. (2015)  Sciencdirect
Hawkes J.A., Rossel P.E., Stubbins A., Butterfield D., Connelly D.P., Achterberg E.P., Koschinsky A., Chavagnac V., Hansen C.T., Bach W. and Dittmar T.: Ef­fi­ci­ent re­mo­val of re­cal­cit­rant deep-oce­an dis­sol­ved or­ga­nic mat­ter du­ring hydro­ther­mal cir­cu­la­ti­on. Na­tu­re Geo­sci­ence 8, 856-860. (2015)  nature
Kellerman A., Kothawala D.N., Dittmar T. and Tranvik L.J.: Per­sis­tence of dis­sol­ved or­ga­nic mat­ter in lakes re­la­ted to its mole­cu­lar cha­rac­te­ris­tics. Na­tu­re Geo­sci­ence 8, 454-457. (2015)  nature
Kim T.-H., Kim G., Lee S.-A. and Dittmar T.: Ex­tra­or­di­na­ry slow de­gra­da­ti­on of dis­sol­ved or­ga­nic car­bon (DOC) in a cold mar­gi­nal sea. Sci­en­ti­fic Re­ports., 5 (13808) 1-6. DOI: 10.1038/​sre­p13808. (2015)  nature  Full Text
Kleindienst S., Seidel M., Ziervogel K., Grim S., Loftis K., Harrison S., Malkin S.Y., Perkins M.J., Field J., Sogin M.L., Dittmar T., Passow U., Medeiros P.M. and Joye S.B.: Che­mi­cal dis­per­s­ants can sup­press the ac­tivi­ty of na­tu­ral oil-de­gra­ding mi­cro­or­ga­nisms. Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces PNAS 112 (48) 14900-14905. (2015)  PubMed  Full Text
Medeiros P.M., Seidel M., Powers L.C., Dittmar T., Hansell D.A. and Miller W.L.: Dis­sol­ved or­ga­nic mat­ter com­po­si­ti­on and pho­to­che­mi­cal trans­for­ma­ti­ons in the nort­hern North Pa­ci­fic Oce­an. Geo­phy­si­cal Re­se­arch Let­ters 42, 863-870. (2015)  Wiley
Medeiros P.M., Seidel M., Ward N.D., Carpenter E.J., Gomes H.R., Niggemann J., Krusche A.V., Richey J.E., Yager P.L. and Dittmar T.: Fate of the Ama­zon Ri­ver dis­sol­ved or­ga­nic mat­ter in the tro­pi­cal At­lan­tic Oce­an. Glo­bal Bio­geo­che­mi­cal Cy­cles 29, 677-690. (2015)  Wiley
Pohlabeln A. and Dittmar T.: No­vel in­sights into the mole­cu­lar struc­tu­re of non-vo­la­ti­le ma­ri­ne dis­sol­ved or­ga­nic sul­fur. Ma­ri­ne Che­mis­try 168, 86-94. (2015)  ScienceDirect
Reckhardt A., Beck M., Seidel M., Riedel T., Wehrmann A., Bartholomä A., Schnetger B., Dittmar T. and Brumsack H.J.: Car­bon, nut­ri­ent and tra­ce me­tal cy­cling in san­dy se­di­ments: A com­pa­ri­son of high-en­er­gy be­aches and back­bar­ri­er ti­d­al flats. Es­tua­ri­ne, Co­as­tal and Shelf Sci­ence 159, 1-14. (2015)  ScienceDirect
Rossel P.E., Stubbins A., Hach P.F. and Dittmar T.: Bio­a­vail­a­bi­li­ty and mole­cu­lar com­po­si­ti­on of dis­sol­ved or­ga­nic mat­ter from a dif­fu­se hydro­ther­mal sys­tem. Ma­ri­ne Che­mis­try 177, 257-266. (2015)  ScienceDirect
Roth V.-N., Dittmar T., Gaupp R. and Gleixner G.: The mole­cu­lar com­po­si­ti­on of dis­sol­ved or­ga­nic mat­ter in fo­rest soils as a func­tion of pH and tem­pe­ra­tu­re. PLOS One 10 (3) e0119188, 1-23. (2015)  PubMed  Full Text
Santos I.R., Beck M., Brumsack H.J., Maher D.T., Dittmar T., Waska H. and Schnetger B.: Po­re­wa­ter ex­ch­an­ge as a dri­ver of car­bon dy­na­mics across a ter­restri­al-ma­ri­ne tran­sect: In­sights from cou­p­led 222Rn and pCO2 ob­ser­va­tions in the Ger­man Wad­den Sea. Ma­ri­ne Che­mis­try 171, 10-20. (2015)  ScienceDirect
Schwedt A., Seidel M., Dittmar T., Simon M., Bondarev V., Romano S., Lavik G. and Schulz-Vogt H.N.: Sub­stra­te use of Pseu­do­vi­brio sp. gro­wing in ul­tra-oli­go­tro­phic sea­wa­ter. PLOS One 10 (3) e0121675, 1-16. (2015)  PubMed  Full Text
Seidel M., Beck M., Greskowiak J., Riedel T., Waska H., Suryaputra I.G.N.A., Schnetger B., Niggemann J., Simon M. and Dittmar T.: Bent­hic-pel­agic cou­pling of nut­ri­ents and dis­sol­ved or­ga­nic mat­ter com­po­si­ti­on in an in­terti­dal san­dy beach. Ma­ri­ne Che­mis­try 176, 150-163. (2015)  ScienceDirect
Seidel M., Yager P.L., Ward N.D., Carpenter E.J., Gomes H.R., Krusche A.V., Richey J.E. and Dittmar T. and Medeiros P.M.: Mole­cu­lar-le­vel chan­ges of dis­sol­ved or­ga­nic mat­ter along the Ama­zon Ri­ver-to-oce­an con­ti­nu­um. Ma­ri­ne Che­mis­try 177, 218-231. (2015)  ScienceDirect
Stubbins A. and Dittmar T.: Il­lu­mi­na­ting the deep: Mole­cu­lar si­gna­tu­res of pho­to­che­mi­cal al­te­ra­ti­on of dis­sol­ved or­ga­nic mat­ter from North At­lan­tic Deep Wa­ter. Ma­ri­ne Che­mis­try 177, 318-324. (2015)  ScienceDirect
Stubbins A., Spencer R.G.M., Mann P.J., Holmes R.M., McClelland J.W., Niggemann J. and Dittmar T.: Uti­li­zing co­lo­red dis­sol­ved or­ga­nic mat­ter to de­ri­ve dis­sol­ved black car­bon ex­port by Arc­tic Ri­vers. Fron­tiers in Earth Sci­ence 3, 63, 1-11. (2015)  Frontiers
Suryaputra I.G.N.A., Santos I.R., Huettel M., Burnett W.C. and Dittmar T.:Non-con­ser­va­ti­ve be­ha­vi­or of fluo­re­scent dis­sol­ved or­ga­nic mat­ter (FDOM) wi­t­hin a sub­ter­ra­ne­an es­tua­ry. Con­ti­nen­tal Shelf Re­se­arch 110, 183-190. (2015)  ScienceDirect
Wagner S., Dittmar T. and Jaffé R.: Mole­cu­lar cha­rac­te­riza­t­i­on of dis­sol­ved black ni­tro­gen via elec­tro­s­pray io­niza­t­i­on Fou­rier trans­form ion cy­clo­tron re­so­nan­ce mass spec­tro­me­try. Or­ga­nic Geo­che­mis­try 79, 21-30. (2015)  ScienceDirect
Wagner S., Jaffe R., Cawley K., Dittmar T. and Stubbins A.: As­so­cia­ti­ons bet­ween the mole­cu­lar and op­ti­cal pro­per­ties of dis­sol­ved or­ga­nic mat­ter in the Flo­ri­da Ever­gla­des, a mo­del co­as­tal wet­land sys­tem. Fron­tiers in Che­mis­try 3, 66, 1-14. (2015)  PubMed  Full Text
Wagner S., Riedel T., Niggemann J., Vähätalo A.V., Dittmar T. and Jaffé R.: Lin­king the mole­cu­lar si­gna­tu­re of he­te­r­oato­mic dis­sol­ved or­ga­nic mat­ter to wa­ter­s­hed cha­rac­te­ris­tics in world ri­vers. En­vi­ron­men­tal Sci­ence and Tech­no­lo­gy 49 (23), 13798–13806. (2015)  PubMed
Waska H., Koschinsky A., Ruiz Chancho M.J. and Dittmar T.: In­ves­ti­ga­ting the po­ten­ti­al of so­lid-pha­se extrac­tion and Fou­rier-trans­form ion cy­clo­tron re­so­nan­ce mass spec­tro­me­try (FT-ICR-MS) for the iso­la­ti­on and iden­ti­fi­ca­ti­on of is­sol­ved me­tal-or­ga­nic com­ple­xes from na­tu­ral wa­ters. Ma­ri­ne Che­mis­try 173, 78-92. (2015)  ScienceDirect
Zark M., Riebesell U. and Dittmar T.: Ef­fects of oce­an aci­di­fi­ca­ti­on on ma­ri­ne dis­sol­ved or­ga­nic mat­ter are not de­tec­ta­ble over the suc­ces­si­on of phy­to­plank­ton blooms. Sci­ence Ad­van­ces 1 (9), e1500531, 1-7. (2015)  PubMed  Full Text

Mi­cro­sen­sor Group

Abed, R., D. De Beer and P. Stief: Func­tio­nal-Struc­tu­ral Ana­ly­sis of Ni­tro­gen-Cy­cle Bac­te­ria in a Hy­per­sa­li­ne Mat from the Oma­ni De­sert. Geo­mi­cro­bio­lo­gy Jour­nal, 32(2): p. 119-129. (2015)  TFO
Brocke, H.J., F. Wenzhoefer, D. de Beer, B. Mueller, F.C. van Duyl, and M.M. Nugues: High dis­sol­ved or­ga­nic car­bon re­lease by bent­hic cya­no­bac­te­ri­al mats in a Ca­rib­be­an reef eco­sys­tem. Sci­en­ti­fic Re­ports, 5(8852). (2015)  PubMed  Full Text
Chennu Arjun, Alistair Grinham, Lubos Polerecky, Dirk de Beer and Mohammad A. A. Al-Najjar: Ra­pid Re­ac­tiva­ti­on of Cya­no­bac­te­ri­al Pho­to­syn­the­sis and Mi­gra­ti­on upon Re­hy­dra­ti­on of De­sic­ca­ted Ma­ri­ne Mi­cro­bi­al Mats. Fron­tiers in Mi­cro­bio­lo­gy, 6 (1472). (2015)  PubMed  Full Text
Heim, C., K. Simon, D. Ionescu, A. Reimer, D. de Beer, N.V. Quéric, J. Reitner, and V. Thiel: As­ses­sing the uti­li­ty of tra­ce and rare earth ele­ments as bio­si­gna­tu­res in mi­cro­bi­al iron oxy­hy­droxi­des. Front. Earth Sci., 3(6). (2015)  Frontiers
Hofmann, L.C., A. Fink, K. Bischof, and D. de Beer: Mi­cro­sen­sor stu­dies on Pa­di­na from a na­tu­ral CO2 seep: im­pli­ca­ti­ons of mor­pho­lo­gy on ac­cli­ma­ti­on to low pH. J. Phy­col., 51(6): p. 1106–1115. (2015)  Wiley
Ionescu, D., M. Bizic-Ionescu, A. Khalili, R. Malekmohammadi, R. Morad M., D. de Beer, and H.-P. Grossart: A new tool for long-term stu­dies of POM-bac­te­ria in­ter­ac­tions: over­co­m­ing the cen­tu­ry-old Bott­le Ef­fect. Sci­en­ti­fic Re­ports, 5: p. 14706. (2015)  nature  Full Text
Ionescu, D., C. Heim, L. Polerecky, A. Ramette, S. Haeusler, M. Bizic-Ionescu, V. Thiel, and d.B. D.: Di­ver­si­ty of Iron Oxi­di­zing and Re­du­cing Bac­te­ria in Flow Re­ac­tors in the Äspö Hard Rock La­bo­ra­to­ry. Geo­mi­cro­bio­lo­gy Jour­nal, 32(2-3): p. 207-220. (2015)  TFO
Ionescu, D., C. Heim, L. Polerecky, V. Thiel, and D. de Beer: Bio­tic and abio­tic oxi­da­ti­on and re­duc­tion of iron at cir­cum­neu­tral pH are ins­e­pa­ra­ble pro­ces­ses un­der na­tu­ral con­di­ti­ons. Geo­mi­cro­bio­lo­gy Jour­nal, 32(3-4): p. 221-230. (2015)  TFO
Ionescu, D., S. Spitzer, A. Reimer, D. Schneider, J. Reitner, D. de Beer, and G. Arp: Cal­ci­um dy­na­mics in mi­cro­bia­li­te-for­ming exo­po­ly­mer-rich mats on the atoll of Ki­ri­ti­ma­ti, Re­pu­blic of Ki­ri­ba­ti, Cen­tral Pa­ci­fic. Ge­bio­lo­gy, 13(2): p. 170–180. (2015)  PubMed
Jones, D.S., L. Polerecky, S. Galdenzi, B.A. Dempsey, and J.L. Macalady: Fate of sul­fi­de in the Fra­sas­si cave sys­tem and im­pli­ca­ti­ons for sul­fu­ric acid spe­leo­ge­ne­sis. Che­mi­cal Geo­lo­gy, 410: p. 21-27. (2015)  ScienceDirect
Klatt, J.M., M.A.A. Al-Najjar, P. Yilmaz, G. Lavik, D. de Beer, and L. Polerecky: An­oxy­ge­nic pho­to­syn­the­sis con­trols oxy­ge­nic pho­to­syn­the­sis in a cya­no­bac­te­ri­um from a sul­fi­dic spring. Appl En­vi­ron Mi­cro­bi­ol, 81(6): p. 2025-2031 (2015)  ASM  Full Text
Klatt, J.M., S. Haas, P. Yilmaz, D. de Beer, and L. Polerecky: Hy­dro­gen sul­fi­de can in­hi­bit and en­han­ce oxy­ge­nic pho­to­syn­the­sis in a cya­no­bac­te­ri­um from sul­fi­dic springs. En­vi­ron. Mi­cro­bi­ol., 17(9): p. 3301–3313 (2015)  PubMed
Klatt, J.M., S. Meyer, S. Häusler, J.L. Macalady, D. de Beer, and L. Polerecky: Struc­tu­re and func­tion of na­tu­ral sulphi­de-oxi­di­zing mi­cro­bi­al mats un­der dy­na­mic in­put of light and che­mi­cal en­er­gy. ISME J., DOI10.1038/​is­mej.2015.167 (2015)  ISME
Leefmann, T., C. Heim, J. Lausmaa, P. Sjövall, D. Ionescu, J. Reitner, and V. Thiel: An ima­ging mass spec­tro­me­try stu­dy on the for­ma­ti­on of con­di­tio­n­ing films and bio­films in the sub­sur­face (Äspö Hard Rock La­bo­ra­to­ry, SE Swe­den). Geo­mi­cro­bio­lo­gy Jour­nal, 32: p. 197-206. (2015)  TFO
Li, T., B. Piltz, B. Podola, A. Dron, D. de Beer, and M. Melkonian: Mi­cro­s­ca­le Pro­filing of Pho­to­syn­the­sis-Re­la­ted Va­ria­bles in a High­ly Pro­duc­tive Bio­film Pho­to­bio­re­ac­tor. Bio­tech. Bio­eng., DOI 10.1002/​bit.25867: p. ac­cep­ted. (2015)  PubMed
Li, T., B. Podola, D. de Beer, and M. Melkonian: A me­thod to de­ter­mi­ne pho­to­syn­the­tic ac­tivi­ty from oxy­gen mi­cro­sen­sor data in bio­films sub­jec­ted to eva­po­ra­ti­on. J. Mi­crob. Meth., 117: p. 100-107. (2015)  ScienceDirect
Raulf, F.F., K. Fabricius, S. Uthicke, D. de Beer, R.M.M. Abed, and A. Ramette: Chan­ges in mi­cro­bi­al com­mu­nities in co­as­tal se­di­ments along na­tu­ral CO2 gra­di­ents at a vol­ca­nic vent in Pa­pua New Gui­nea. En­vi­ron. Mi­cro­bi­ol., 17(10): p. 3678–3691 (2015)  PubMed
Schutting, S., T. Jokic, M. Strobl, S.M. Borisov, D. de Beer, and I. Klimant: NIR Op­ti­cal Car­bon Di­oxi­de Sen­sors Ba­sed on High­ly Pho­to­s­table Di­hy­dro­xy-aza-BO­DI­PY Dyes. J. Ma­ter. Chem. C, 3: p. 5474-5483. (2015)  RSC
Spitzer, S., N. Brinkmann, A. Reimer, D. Ionescu, T. Friedl, D. de Beer, and G. Arp: Ef­fect of va­ria­ble pCO2 on Ca2+ re­mo­val and po­ten­ti­al cal­ci­fi­ca­ti­on of cya­no­bac­te­ri­al bio­films - an ex­pe­ri­men­tal mi­cro­sen­sor stu­dy. Geo­mi­cro­bio­lo­gy Jour­nal, 32(3-4): p. 304-315. (2015)  TFO
Wu, C.S., H. Roy and D. de Beer: Me­tha­no­ge­ne­sis in se­di­ments of an in­terti­dal sand flat in the Wad­den Sea. Es­tu­ar. Co­ast. Shelf Sci., 164: p. 39–45. (2015)  deepdive

Ma­ri­ne Iso­to­pen­geo­che­mie

Basak, C., Pahnke, K., Frank, M., Lamy, F., Gersonde, R.: Neo­dy­mi­um iso­to­pic cha­rac­te­riza­t­i­on of Ross Sea Bot­tom Wa­ter and its ad­vec­tion through the sou­thern South Pa­ci­fic. Earth and Pla­ne­ta­ry Sci­ence Let­ters 419, 211-221. doi: http://​dx.doi.org/​10.1016/​j.epsl.2015.03.011. (2015)  ScienceDirect
Böning, P., Shaw, T., Pahnke, K., Brumsack, H.-J.: Ni­ckel as in­di­ca­tor of fresh or­ga­nic mat­ter in up­wel­ling se­di­ments. Geochi­mi­ca et Cos­mochi­mi­ca Acta 162, 99-108. doi: http://​dx.doi.org/​10.1016/​j.gca.2015.04.027. (2015)  ScienceDirect
Doering, K., Ehlert, C., Grasse, P., Crosta, X., Fleury, S., Frank, M., Schneider, R.: Dif­fe­ren­ces bet­ween mono-ge­ne­ric and mi­xed dia­tom si­li­con iso­to­pe com­po­si­ti­ons tra­ce pre­sent and past nut­ri­ent uti­liza­t­i­on off Peru. Geochi­mi­ca et Cos­mochi­mi­ca Acta. (2015)  ScienceDirect  Full Text
Ehlert, C., Grasse, P., Gutiérrez, D., Frank, M.: Nut­ri­ent uti­li­sa­ti­on and wea­the­ring In­puts in the Pe­ru­vi­an up­wel­ling sin­ce the Litt­le Ice Age. Cli­ma­te of the Past 11, 187-202. doi: doi:10.5194/​cp-11-187-2015. (2015)  CotP  Full Text
Klawonn, I., Lavik, G., Böning, P., Marchant, H.K., Dekaezemacker, J., Mohr, W., Ploug, H.: Sim­ple ap­proach for the pre­pa­ra­ti­on of 15-15N2-en­ri­ched wa­ter for ni­tro­gen fixa­ti­on as­sess­ments: Eva­lua­ti­on, ap­p­li­ca­ti­on and re­com­men­da­ti­ons. Fron­tiers in Mi­cro­bio­lo­gy 6, 769. doi: doi.org/​10.3389/​fmi­cb.2015.00769. (2015)  PubMed  Full Text
Luguet, A., Behrens, M., Pearson, D.G., Konig, S., Herwartz, D.: Si­gni­fi­can­ce of the who­le rock Re-Os ages in cryp­ti­cal­ly and mo­dal­ly me­ta­so­ma­ti­sed cra­to­nic pe­ri­do­ti­tes: Cons­traints from HSE-Se-Te sys­te­ma­tics. Geochi­mi­ca Et Cos­mochi­mi­ca Acta 164, 441-463. doi: 10.1016/​j.gca.2015.06.016. (2015)  ScienceDirect
Stichel, T., Hartman, A.E., Duggan, B., Goldstein, S.L., Scher, H., Pahnke, K.: Se­pa­ra­ting bio­geo­che­mi­cal cy­cling of neo­dy­mi­um from wa­ter mass mi­xing in the Eas­tern North At­lan­tic. Earth and Pla­ne­ta­ry Sci­ence Let­ters 412, 245-260. doi: 10.1016/​j.epsl.2014.12.008. (2015)  ScienceDirect

De­part­ment of Mi­cro­bio­lo­gy

Beese-Vasbender, P.F., J.P. Grote, J. Garrelfs, M. Stratmann and K.J. Mayrhofer: Selec­tive mi­cro­bi­al elec­tro­syn­the­sis of me­tha­ne by a pure cul­tu­re of a ma­ri­ne li­tho­au­to­tro­phic ar­chaeon. Bio­elec­tro­che­mis­try 102, 50-55. (2015)  PubMed
Büsing, I., M. Kant, M. Dörries, L. Wöhlbrand and R. Rabus: The pre­dic­ted σ(54)-de­pen­dent re­gu­la­tor EtpR is es­sen­ti­al for ex­pres­si­on of ge­nes for an­ae­ro­bic p-ethyl­phe­nol and p-hy­drox­ya­ce­to­pheno­ne de­gra­da­ti­on in "Aro­ma­to­le­um aro­ma­ti­cum" EbN1. BMC Mi­cro­bi­ol. 15, 251. (2015)  PubMed  Full Text
Büsing, I., H.W. Höffken, M. Breuer, L. Wöhlbrand, B. Hauer and R. Rabus: Mole­cu­lar ge­ne­tic and crys­tal struc­tu­ral ana­ly­sis of 1-(4-hy­droxy­phe­nyl)-etha­nol de­hy­dro­ge­na­se from 'A­ro­ma­to­le­um aro­ma­ti­cum' EbN1. J. Mol. Mi­cro­bi­ol. Bio­tech­nol. 25:327-339. (2015)  PubMed  Full Text
Hahnke R.L., C.M. Bennke, B.M. Fuchs, A.J. Mann, E. Rhiel, H. Teeling, R.I. Amann and J. Harder: Di­lu­ti­on cul­ti­va­ti­on of ma­ri­ne he­te­ro­tro­phic bac­te­ria ab­un­dant af­ter a spring phy­to­plank­ton bloom in the North Sea. En­vi­ron. Mi­cro­bi­ol. 17, 3515-3526. (2015)  PubMed
Jarling, R., S. Kühner, J.E. Basílio, A. Gruner, M. Drozdowska, B.T. Golding, R. Rabus and H. Wilkes: Ver­sa­ti­le trans­for­ma­ti­ons of hy­dro­c­ar­bons in an­ae­ro­bic bac­te­ria: sub­stra­te ran­ges and re­gio- and ste­reo-che­mis­try of ac­tiva­ti­on re­ac­tions. Front. Mi­cro­bi­ol. 6:880 (2015)  PubMed  Full Text
Kizina, J., M. Žure, E. Rhiel, C.B. Munn, M. Richter and J. Harder: Per­ma­nent draft ge­no­me of ´Rho­do­pi­rel­lu­la is­lan­di­ca´ strain K833. Ma­ri­ne Ge­no­mics 24, 249-251. (2015)  PubMed
Kleiner, M., C. Wentrup, T. Holler, G. Lavik, J. Harder, C. Lott, S. Littmann, M.M.M. Kuypers and N. Dubilier: Use of car­bon mon­oxi­de and hy­dro­gen by a bac­te­ria-ani­mal sym­bio­sis from se­agrass se­di­ments. En­vi­ron­men­tal Mi­cro­bio­lo­gy, doi:10.1111/​1462-2920.12912. (2015)  PubMed  Full Text
Oni Oluwatobi E., Frauke Schmidt, Tetsuro Miyatake, Sabine Kasten, Matthias Witt, Kai-Uwe Hinrichs and Michael W. Friedrich: Mi­cro­bi­al Com­mu­nities and Or­ga­nic Mat­ter Com­po­si­ti­on in Sur­face and Sub­sur­face Se­di­ments of the Hel­go­land Mud Area, North Sea. Fron­tiers in Mi­cro­bio­lo­gy, 6(1290). (2015)  PubMed  Full Text
Xing, P., R.L. Hahnke, F. Unfried, S. Markert, S. Huang, T. Barbeyron, J. Harder, D. Becher, T. Schweder, F.O. Glöckner, R.I. Amann and H. Teeling: Ni­ches of two po­ly­sac­cha­ri­de-de­gra­ding Po­la­ri­bac­ter iso­la­tes from the North Sea du­ring a spring dia­tom bloom. ISME J. 9,1410-1422. (2015)  PubMed
Žure, M., C.B. Munn and J. Harder: Di­ver­si­ty of Rho­do­pi­rel­lu­la and re­la­ted planc­to­my­ce­tes in a North Sea co­as­tal se­di­ment em­ploy­ing carB as mole­cu­lar mar­ker. FEMS Mi­cro­bi­ol. Lett. 362, doi: 10.1093/​fems­le/​fnv127. (2015)  PubMed  Full Text

Mi­cro­bi­al Ge­no­mics Group

Boeckmann, B., M. Marcet-Houben, J. A. Rees, K. Forslund, J. Huerta-Cepas, M. Muffato, P. Yilmaz, I. Xenarios, P. Bork, S. E. Lewis, et al.: Quest for Or­tho­logs Ent­ails Quest for Tree of Life: In Se­arch of the Gene Stream. Ge­no­me Bio­lo­gy and Evo­lu­ti­on 7:1988-1999. (2015)  PubMed  Full Text
Field, D., I. Friedberg, P. Sterk, R. Kottmann, F. O. Glöckner, L. Hirschman, G. M. Garrity, G. Cochrane, J. Wooley, and J. Gilbert: Mee­ting Re­port: “Me­ta­ge­no­mics, Me­ta­da­ta and Meta-ana­ly­sis” (M3) Spe­cial In­te­rest Group at ISMB 2009. SIGS 1:278. (2015)  PubMed  Full Text
Kizina, J., M. Zure, E. Rhiel, C. B. Munn, M. Richter, and J. Harder: Per­ma­nent draft ge­no­me of 'Rho­do­pi­rel­lu­la is­lan­di­ca' strain K833. Mar Ge­no­mics 24 Pt 3:249-51. (2015)  PubMed
Klatt, J. M., M. A. Al-Najjar, P. Yilmaz, G. Lavik, D. de Beer, and L. Polerecky: An­oxy­ge­nic pho­to­syn­the­sis con­trols oxy­ge­nic pho­to­syn­the­sis in a cya­no­bac­te­ri­um from a sul­fi­dic spring. Appl En­vi­ron Mi­cro­bi­ol 81:2025-31. (2015)  ASM  Full Text
Klatt, J. M., S. Haas, P. Yilmaz, D. de Beer, and L. Polerecky: Hy­dro­gen sul­fi­de can in­hi­bit and en­han­ce oxy­ge­nic pho­to­syn­the­sis in a cya­no­bac­te­ri­um from sul­fi­dic springs. En­vi­ron Mi­cro­bi­ol 17:3301-3313. (2015)  PubMed
Kolinko, S., M. Richter, F. O. Glöckner, A. Brachmann, and D. Schüler: Sin­gle-cell ge­no­mics of un­cul­ti­va­ted deep-bran­ching ma­gne­tot­ac­tic bac­te­ria re­veals a con­ser­ved set of ma­gne­to­so­me ge­nes. En­vi­ron. Mi­cro­bi­ol. 18:21-37. (2015)  PubMed
Kopf, A., M. Bicak, R. Kottmann, J. Schnetzer, I. Kostadinov, K. Lehmann, A. Fernandez-Guerra, C. Jeanthon, E. Rahav, M. Ullrich, et al.: The oce­an sam­pling day con­sor­ti­um. Gi­ga­Sci­ence 4:27. (2015)  PubMed  Full Text
Kopf, A., I. Kostadinov, A. Wichels, C. Quast, and F. O. Glöckner: Me­ta­tran­scrip­to­me of ma­ri­ne bac­te­rio­plank­ton du­ring win­ter time in the North Sea as­ses­sed by to­tal RNA se­quen­cing. Ma­ri­ne Ge­no­mics 19:45-46. (2015)  ScienceDirect  Full Text
Medema, M. H., R. Kottmann, P. Yilmaz, M. Cummings, J. B. Biggins, K. Blin, I. de Bruijn, Y. H. Chooi, J. Claesen, R. C. Coates, et al.: Mi­ni­mum In­for­ma­ti­on about a Bio­syn­the­tic Gene clus­ter. Nat Chem Biol 11:625-631. (2015)  nature
Pafilis, E., P. L. Buttigieg, B. Ferrell, E. Pereira, J. Schnetzer, C. Arvanitidis, and L. J. Jensen: EXTRACT: In­ter­ac­tive extrac­tion of en­vi­ron­ment me­ta­da­ta and term sug­ges­ti­on for me­ta­ge­no­mic samp­le an­no­ta­ti­on. Pro­cee­dings of the fifth Bio­Crea­ti­ve chal­len­ge eva­lua­ti­on work­shop:384–395. (2015)  PubMed  Full Text
Pafilis, E., S. P. Frankild, J. Schnetzer, L. Fanini, S. Faulwetter, C. Pavloudi, A. Vasileiadou, P. Leary, J. Hammock, K. Schulz, et al.: EN­VI­RON­MENTS and EOL: iden­ti­fi­ca­ti­on of En­vi­ron­ment On­to­lo­gy terms in text and the an­no­ta­ti­on of the En­cy­clo­pe­dia of Life. Bio­in­for­ma­tics 31:1872–1874. (2015)  PubMed  Full Text
Panzer, K., P. Yilmaz, M. Weiß, L. Reich, M. Richter, J. Wiese, R. Schmaljohann, A. Labes, J. F. Imhoff, F. O. Glöckner, et al.: Iden­ti­fi­ca­ti­on of Ha­bi­tat-Spe­ci­fic Bio­mes of Aqua­tic Fun­gal Com­mu­nities Using a Com­pre­hen­si­ve Ne­ar­ly Full-Length 18S rRNA Da­ta­set En­ri­ched with Con­textu­al Data. PLoS ONE 10:e0134377. (2015)  PubMed  Full Text
Richter, M., R. Rosselló-Móra, F. O. Glöckner, and J. Peplies: JSpe­cies­WS: a web ser­ver for pro­ka­ryo­tic spe­cies cir­cum­scrip­ti­on ba­sed on pair­wi­se ge­no­me com­pa­ri­son. Bio­in­for­ma­tics:on­line. (2015)  PubMed  Full Text
ten Hoopen, P., S. Pesant, R. Kottmann, A. Kopf, M. Bicak, S. Claus, K. Deneudt, C. Borremans, P. Thijsse, S. Dekeyzer, et al.: Ma­ri­ne mi­cro­bi­al bio­di­ver­si­ty, bio­in­for­ma­tics and bio­tech­no­lo­gy (M2B3) data re­porting and ser­vice stan­dards. SIGS 10:1-10. (2015)  PubMed  Full Text
Xing, P., R. L. Hahnke, F. Unfried, S. Markert, S. Huang, T. Barbeyron, J. Harder, D. Becher, T. Schweder, F. O. Glöckner, et al.: Ni­ches of two po­ly­sac­cha­ri­de-de­gra­ding Po­la­ri­bac­ter iso­la­tes from the North Sea du­ring a spring dia­tom bloom. ISME J 9:1410-1422. (2015)  PubMed  Full Text
Yarza, P., R. Munoz, J. Euzéby, W. Ludwig, K.-H. Schleifer, R. Amann, F. O. Glöckner, and R. Rosselló-Móra: All-Spe­cies Li­ving Tree Pro­ject. En­cy­clo­pe­dia of Me­ta­ge­no­mics: Ge­nes, Ge­no­mes and Me­ta­ge­no­mes: Ba­sics, Me­thods, Da­ta­ba­ses and Tools:25-33. (2015)  ScienceDirect
Yilmaz, P., and F. O. Glöckner: Me­ta­ge­no­mes: 23S Se­quen­ces. En­cy­clo­pe­dia of Me­ta­ge­no­mics: Ge­nes, Ge­no­mes and Me­ta­ge­no­mes: Ba­sics, Me­thods, Da­ta­ba­ses and Tools:396-402. (2015)  Springer

HGF-MPG-Brü­cken­grup­pe

Ahmerkamp S., Winter C., Janssen F., Kuypers M.M.M., Holtappels M.: The im­pact of bed­form mi­gra­ti­on on bent­hic oxy­gen flu­xes. Jour­nal of Geo­phy­si­cal Re­se­arch: Bio­geo­sci­en­ces. 120, 2229–2242, (2015)  Wiley
Boetius A., Anesio A.M., Deming J.W., Mikucki J. & Rapp J.Z.: Mi­cro­bi­al eco­lo­gy of the cryo­s­phe­re: sea ice and gla­ci­al ha­bi­tats. Nat. Rev. Mi­cro­bi­ol. 13:677–690. doi:10.1038/​nrmi­cro3522. (2015)  PubMed
Brocke H.J., Wenzhöfer F., de Beer D., Mueller B., van Duyl F.C., Nugues M.N.: High dis­sol­ved or­ga­nic car­bon re­lease by bent­hic cya­no­bac­te­ri­al mats in a Ca­rib­be­an reef eco­sys­tem. Sci­en­ti­fic Re­por­ters 5: 8852 DOI: 10.1038/​sre­p08852. (2015)  PubMed  Full Text
Buttigieg P.L., Ramette A.: Bio­geo­gra­phic pat­terns of bac­te­ri­al mi­cro­di­ver­si­ty in Arc­tic deep-sea se­di­ments (HAUS­GAR­TEN, Fram Strait). Front Mi­cro­bi­ol. doi: 10.3389/​fmi­cb.2014.00660. (2015)  PubMed  Full Text
Degen R., Vedenin A., Gusky M., Boetius A., Brey T.: Pat­terns and trends of ma­cro­bent­hic ab­un­dance, bio­mass and pro­duc­tion in the deep Arc­tic Oce­an. Po­lar Re­se­arch 34, 24008, http://​dx.doi.org/​10.3402/​po­lar.v34.24008. (2015) Polar Research  Full Text
Donis D., Holtappels M., Noss C., Cathalot C., Hancke K., Polsenaere P., Lorke A., Glud R.N., Wenzhöfer F., Meysman F.J.R., McGinnis D.F.: An as­sess­ment of the pre­ci­si­on and con­fi­dence of aqua­tic eddy cor­re­la­ti­on. Jour­nal of At­mo­s­phe­ric and Ocea­nic Tech­no­lo­gy, Jour­nal of At­mo­s­phe­ric and Ocea­nic Tech­no­lo­gy 32, 642-655. (2015)  AMS  Full Text
Donis D., McGinnis D.F., Holtappels M., Felden J., Wenzhöfer F.: As­ses­sing bent­hic oxy­gen flu­xes in oli­go­tro­phic deep sea se­di­ments (HAUS­GAR­TEN ob­ser­va­to­ry). Deep Sea Re­se­arch I. 11: 1-10. doi: 10.1016/​j.dsr.2015.11.007. (2016)  ScienceDirect
Dowell F., Cardman Z., Dasarathy S., Kellermann M., Lipp J. S., Ruff S. E., Biddle J. F., McKay L., MacGregor B. J., Lloyd K. G., Albert D. B., Mendlovitz H., Hinrichs K.-U., Teske A.: Mi­cro­bi­al com­mu­nities in me­tha­ne- and short chain al­ka­ne-rich hydro­ther­mal se­di­ments of Gu­ay­mas Ba­sin. Fron­tiers in Mi­cro­bio­lo­gy. http://​dx.doi.org/​10.3389/​fmi­cb.2016.00017 (2016)  PubMed  Full Text
Fernández-Méndez M., Katlein C., Rabe B., Nicolaus M., Peeken I., Bakker K., Flores H., Boetius A.: Pho­to­syn­the­tic pro­duc­tion in the cen­tral Arc­tic Oce­an du­ring the re­cord sea-ice mi­ni­mum in 2012. Bio­geo­sci­en­ces 12: 3525-3549. doi:10.5194/​bg-12-3525-2015. (2015)  Biogeosciences  Full Text
Hassenrück C., Hofmann L.C., Bischof K., Ramette A.: Se­agrass bio­film com­mu­nities at a na­tu­ral­ly CO2-rich vent. En­vi­ron­men­tal Mi­cro­bio­lo­gy Re­ports 7:516–525. doi: 10.1111/​1758-2229.12282. (2015)  PubMed  Full Text
Hawkes J.A., Rossel P.E., Stubbins A., Butterfield D., Connelly D.P., Achterberg E.P., Koschinsky A., Chavagnac V., Hansen C.T., Bach W., Dittmar T.: Ef­fi­ci­ent re­mo­val of re­cal­cit­rant deep-oce­an dis­sol­ved or­ga­nic mat­ter du­ring hydro­ther­mal cir­cu­la­ti­on. Na­tu­re Geo­sci­ence, doi:10.1038/​ngeo2543. (2015)  nature
Ionescu D., Heim C., Polerecky L., Ramette A., Haeusler S., Bizic-Ionescu M., Thiel V., de Beer D.: Di­ver­si­ty of iron oxi­di­zing and re­du­cing bac­te­ria in flow re­ac­tors in the Äspö Hard Rock La­bo­ra­to­ry. Geo­mi­cro­bio­lo­gy Jour­nal 32:207-220. DOI: 10.1080/​01490451.2014.884196. (2015)  TFO
Katlein C., Arndt S., Nicolaus M., Perovich D.K., Jakuba M.V., Suman S., Elliott S., Whitcomb L.L., McFarland C.J., Gerdes R., Boetius A., German C.R.: In­flu­ence of ice thick­ness and sur­face pro­per­ties on light trans­mis­si­on through Arc­tic sea ice. Jour­nal of Geo­phy­si­cal Re­se­arch doi: 10.1002/​2015JC010914. (2015)  Wiley  Full Text
Lee Y.J., Matrai P.A., Friedrichs M.A.M., Saba V.S., Antoine D., Ardyna M., Asanuma I., Babin M., Bélanger S., Benoît‐Gagné M., Devred E., Fernández‐Méndez M., Gentili B., Hirawake T., Kang S.-H., Kameda T., Katlein C., Lee S.H., Lee Z., Mélin F., Scardi M., Smyth T.J., Tang S., Turpie K.R., Waters K.J., Westberry T.K.: An as­sess­ment of phy­to­plank­ton pri­ma­ry pro­duc­tivi­ty in the Arc­tic Oce­an from sa­tel­li­te oce­an co­lor/​in situ chlo­ro­phyll‐a‐ba­sed mo­dels. Jour­nal of Geo­phy­si­cal Re­se­arch: Oce­ans. doi: 10.1002/​2015JC011018. (2015)  Wiley  Full Text
Leduc D., Rowden A., Glud R.N., Wenzhöfer F., Kitazato H., Clark M.: Com­pa­ri­son bet­ween in­fau­nal com­mu­nities of the deep floor and edge of the Ton­ga Trench: pos­si­ble ef­fects of dif­fe­ren­ces in or­ga­nic mat­ter sup­p­ly. Deep Sea Re­se­arch I. (2015)  ScienceDirect
Lichtschlag A., Donis D., Janssen F., Jessen G.L., Holtappels M., Wenzhöfer F., Mazlumyan S., Sergeeva N., Waldmann C., Boetius A.: Ef­fects of fluc­tua­ting hy­po­xia on bent­hic oxy­gen con­sump­ti­on in the Black Sea (Cri­me­an shelf). Bio­geo­sci­en­ces 12: 5075-5092. doi:10.5194/​bg-12-5075-2015. (2015)  Biogeosciences  Full Text
Nolla-Ardèvol V., Strous M., Tegetmeyer H.E.: An­ae­ro­bic di­ges­ti­on of the mi­cro­al­ga Spi­ru­li­na at ex­tre­me al­ka­li­ne con­di­ti­ons: bio­gas pro­duc­tion, me­ta­ge­no­me, and me­ta­tran­scrip­to­me. Fron­tiers in Mi­cro­bio­lo­gy 6(597): 597. (2015)  PubMed  Full Text
Nolla-Ardèvol V., Peces M., Strous M., Tegetmeyer H.E.: Me­ta­ge­no­me from a Spi­ru­li­na di­gesting bio­gas re­ac­tor: ana­ly­sis via bin­ning of con­tigs and clas­si­fi­ca­ti­on of short reads. BMC Mi­cro­bio­lo­gy. 15:277. doi: 10.1186/​s12866-015-0615-1. (2015)  PubMed  Full Text
Pafilis E., Buttigieg P. L., Ferrel B.l, Pereira E., Schnetzer J., Arvanitidis C., Jensen L. J.: EXTRACT: In­ter­ac­tive extrac­tion of en­vi­ron­ment me­ta­da­ta and term sug­ges­ti­on for me­ta­ge­no­mic samp­le an­no­ta­ti­on. Da­ta­ba­se. (2015)  PubMed  Full Text
Pop Ristova P., Wenzhöfer F., Ramette A., Felden J., Boetius A.: Spa­ti­al sca­ling of bac­te­ri­al com­mu­nities as­so­cia­ted with cold seeps of the deep Eas­tern Me­di­ter­ra­ne­an sea. ISME. (2015)  PubMed  Full Text
Raulf F.F., Fabricius K., Uthicke S., de Beer D., Abed R.M., Ramette A.: Chan­ges in mi­cro­bi­al com­mu­nities in co­as­tal se­di­ments along na­tu­ral CO2 gra­di­ents at a vol­ca­nic vent in Pa­pua New Gui­nea. En­vi­ron Mi­cro­bi­ol. doi: 10.1111/​1462-2920.12729. (2015)  PubMed
Rossel P.E., Stubbins A., Hach P., Dittmar T.: Bio­a­vail­a­bi­li­ty and mole­cu­lar com­po­si­ti­on of dis­sol­ved or­ga­nic mat­ter from a dif­fu­se hydro­ther­mal sys­tem. Ma­ri­ne Che­mis­try. doi: org/​10.1016/ j.mar­chem.2015.07.002. (2015)  ScienceDirect
Ruff S. E., Biddle J. F., Teske A. P., Knittel K., Boetius A., Ramette A.: Glo­bal dis­per­si­on and lo­cal di­ver­si­fi­ca­ti­on of the me­tha­ne seep mi­cro­bio­me. Pro­cee­dings of the Na­tio­nal Aca­de­my of Sci­en­ces USA 112(13): 4015-4020. (2015)  PNAS
Wegener G., Krukenberg V., Riedel D., Tegetmeyer H.E., Boetius A.: In­ter­cel­lu­lar wiring enables elec­tron trans­fer bet­ween me­tha­notro­phic ar­chaea and bac­te­ria. Na­tu­re 526 (7574):587-590. (2015)  nature
Diploma theses / Master theses
Varliero, G.: Pro­ka­ryo­tic com­mu­ni­ty struc­tu­re in ul­tra-slow sprea­ding Sou­thwest In­dian Ridge. Uni­ver­si­ty of Bo­lo­gna/​Max Planck In­sti­tu­te for Ma­ri­ne Mi­cro­bio­lo­gy. (2015)
Ph.D. theses
Jessen Reyes, G. L.: Struc­tu­ral and func­tio­nal chan­ges in ma­ri­ne mi­cro­bi­al com­mu­nities as­so­cia­ted with oxy­gen dy­na­mics. 193 pp. Uni­ver­si­ty of Bre­men. (2015)
Krukenberg, V.: Phy­sio­lo­gi­cal and ge­no­mic cha­rac­te­riza­t­i­on of ther­mo­phi­lic me­tha­notro­phic ar­chaea and part­ner bac­te­ria. 224 pp. Uni­ver­si­ty of Bre­men. (2015)
Wulff, T.: Phy­sics and eco­lo­gy of the mar­gi­nal ice zone of the Fram Strait – a ro­bo­tic ap­proach. Uni­ver­si­ty of Bre­men. (2015)

De­part­ment of Bio­geo­che­mis­try

Kalvelage, T., Lavik, G., Jensen, M. M., Revsbech, N. P., Löscher, C., Schunck, H., Desai, D. K., Hauss, H., Kiko, R., Holtappels, M., and Kuypers, M.K.: Ae­ro­bic Mi­cro­bi­al Re­spi­ra­ti­on In Ocea­nic Oxy­gen Mi­ni­mum Zo­nes. PloS one, v. 10, no. 7, p. e0133526. (2015)  PubMed  Full Text
Klatt, J. M., Al-Najjar, M. A., Yilmaz, P., Lavik, G., de Beer, D., and Polerecky, L.: An­oxy­ge­nic pho­to­syn­the­sis con­trols oxy­ge­nic pho­to­syn­the­sis in a cya­no­bac­te­ri­um from a sul­fi­dic spring. Ap­p­lied and En­vi­ron­men­tal Mi­cro­bio­lo­gy, v. 81, no. 6, p. 2025-2031. (2015)  ASM  Full Text
Klawonn, I., Lavik, G., Böning, P., Marchant, H. K., Dekaezemacker, J., Mohr, W., and Ploug, H.: Sim­ple ap­proach for the pre­pa­ra­ti­on of 15− 15N2-en­ri­ched wa­ter for ni­tro­gen fixa­ti­on as­sess­ments: eva­lua­ti­on, ap­p­li­ca­ti­on and re­com­men­da­ti­ons. Fron­tiers in mi­cro­bio­lo­gy, v. 6. (2015)  PubMed  Full Text
Kleiner, M., Wentrup, C., Holler, T., Lavik, G., Harder, J., Lott, C., Littmann, S., Kuypers, M. M., and Dubilier, N.: Use of car­bon mon­oxi­de and hy­dro­gen by a bac­te­ria–ani­mal sym­bio­sis from se­agrass se­di­ments. En­vi­ron­men­tal Mi­cro­bio­lo­gy, v. 17, no. 12, p. 5023-5035. (2015)  PubMed  Full Text
Löscher, C., Bange, H. W., Schmitz, R., Callbeck, C., Engel, A., Hauss, H., Kanzow, T., Kiko, R., Lavik, G., and Loginova, A.: Wa­ter co­lumn bio­geo­che­mis­try of oxy­gen mi­ni­mum zo­nes in the eas­tern tro­pi­cal North At­lan­tic and eas­tern tro­pi­cal South Pa­ci­fic Oce­ans. Bio­geo­sci­en­ces Dis­cus­sions, v. 12, no. 6, p. 4495-4556. (2015)  Biogeosciences
Schwedt, A., Seidel, M., Dittmar, T., Simon, M., Bondarev, V., Romano, S., Lavik, G., and Schulz-Vogt, H. N.: Sub­stra­te use of Pseu­do­vi­brio sp. gro­wing in ul­tra-oli­go­tro­phic sea­wa­ter. PloS one, v. 10, no. 3, p. e0121675. (2015)  PubMed  Full Text
Svedén, J. B., Adam, B., Walve, J., Nahar, N., Musat, N., Lavik, G., Whitehouse, M. J., Kuypers, M. M., and Ploug, H.: High cell-spe­ci­fic ra­tes of ni­tro­gen and car­bon fixa­ti­on by the cya­no­bac­te­ri­um Apha­ni­zo­me­non sp. at low tem­pe­ra­tu­res in the Bal­tic Sea. FEMS mi­cro­bio­lo­gy eco­lo­gy, p. fi­v131. (2015)  PubMed
Anna L. Dörgens, Soeren Ahmerkamp, Jörg Müssig, Roman Stocker, Marcel M. M. Kuypers, Arzhang Khalili and Kolja Kindler: A la­bo­ra­to­ry mo­del of ma­ri­ne snow. Pre­pa­ra­ti­on and cha­rac­te­riza­t­i­on of po­rous fi­ber par­ti­cles. Lim­no­lo­gy and Ocea­no­gra­phy: Me­thods, V. 13, I. 11, No­vem­ber Pa­ges 664–671 (2015)  Wiley
Danny Ionescu, Mina Bizic-Ionescu, Arzhang Khalili, Reza Malekmohammadi, Mohammad Reza Morad, Dirk de Beer & Hans-Peter Grossart: A new tool for long-term stu­dies of POM-bac­te­ria in­ter­ac­tions: over­co­m­ing the cen­tu­ry-old Bott­le Ef­fect. Sci­en­ti­fic Re­ports 5, Ar­ti­cle num­ber: 14706 (2015)  nature  Full Text
Jana Milucka, Mathias Kirf, Lu Lu, Andreas Krupke, Phyllis Lam, Sten Littmann, Marcel MM Kuypers and Carsten J Schubert: Me­tha­ne oxi­da­ti­on cou­p­led to oxy­ge­nic pho­to­syn­the­sis in an­oxic wa­ters. The ISME Jour­nal 9, 1991–2002; doi:10.1038/​is­mej.2015.12. (2015)  nature  Full Text
Kirsten Oswald, Jana Milucka, Andreas Brand, Sten Littmann, Bernhard Wehrli, Marcel M. M. Kuypers, and Carsten J. Schubert: Light-de­pen­dent ae­ro­bic me­tha­ne oxi­da­ti­on re­du­ces me­tha­ne emis­si­ons from sea­so­nal­ly stra­ti­fied lakes. PLoS One 10(7): e0132574; doi: 10.1371/​jour­nal.pone.0132574. (2015)  PubMed  Full Text
Ahmerkamp, S., C. Winter, F. Janssen, M. M. M. Kuypers and M. Holtappels: The im­pact of bed­form mi­gra­ti­on on bent­hic oxy­gen flu­xes. Jour­nal of Geo­phy­si­cal Re­se­arch: Bio­geo­sci­en­ces 120(11): 2229-2242. (2015)  Wiley
Donis, D., M. Holtappels, C. Noss, C. Cathalot, K. Hancke, P. Polsenaere, F. Wenzhöfer, A. Lorke, F. J. R. Meysman, R. N. Glud and D. F. McGinnis: An As­sess­ment of the Pre­ci­si­on and Con­fi­dence of Aqua­tic Eddy Cor­re­la­ti­on Mea­su­re­ments. Jour­nal of At­mo­s­phe­ric and Ocea­nic Tech­no­lo­gy 32(3): 642-655. (2015)  AMS  Full Text
Holtappels, M., C. Noss, K. Hancke, C. Cathalot, D. F. McGinnis, A. Lorke and R. N. Glud: Aqua­tic Eddy Cor­re­la­ti­on: Quan­ti­fy­ing the Ar­ti­fi­ci­al Flux Cau­sed by Stir­ring-Sen­si­ti­ve O2 Sen­sors. Plos One 10(1): e0116564. (2015)  PubMed  Full Text
Kalvelage, T., G. Lavik, M. M. Jensen, N. P. Revsbech, C. Löscher, H. Schunck, D. K. Desai, H. Hauss, R. Kiko, M. Holtappels, J. LaRoche, R. A. Schmitz, M. I. Graco and M. M. M. Kuypers: Ae­ro­bic Mi­cro­bi­al Re­spi­ra­ti­on In Ocea­nic Oxy­gen Mi­ni­mum Zo­nes. Plos One 10(7): e0133526. (2015)  PubMed  Full Text
Lichtschlag, A., D. Donis, F. Janssen, G. L. Jessen, M. Holtappels, F. Wenzhöfer, S. Mazlumyan, N. Sergeeva, C. Waldmann and A. Boetius: Ef­fects of fluc­tua­ting hy­po­xia on bent­hic oxy­gen con­sump­ti­on in the Black Sea (Cri­me­an shelf). Bio­geo­sci­en­ces 12(16): 5075-5092. (2015)  Biogeosciences  Full Text
Hansel CM, TG Ferdelman, and BM Tebo: Cryp­tic cross-linka­ges among bio­geo­che­mi­cal cy­cles: no­vel in­sights from re­ac­tive in­ter­me­dia­tes. Ele­ments, 11, 409-414. (2015)  GeoScienceWorld
D’Hondt S, F Inagaki, CA Zarikian, LJ Abrams, N Dubois, T Engelhardt, H Evans, T Ferdelman, B Gribsholt, RN Harris, BW Hoppie, J-H Hyun, J Kallmeyer, J Kim, JE Lynch, CC McKinley, S Mitsunobu, Y Morono, RW Murray, R Pockalny, J Sauvage, T Shiomono, F Shiraishi, DC Smith, CE Smith-Duque, AJ Spivack, BO Steinsbu, Y Suzuki, M Szpak, L Toffin, G Uramoto, YT Tamagusi, G Zhan, X-H Zhang and W Ziebis: Pre­sence of oxy­gen and ae­ro­bic com­mu­nities from sea floor to bas­e­ment in deep-sea se­di­ments. Na­tu­re Geo­sci­ence 8, 299-304. (2015)  nature
Wehrmann LM, J Titschack, ME Böttcher, and TG Ferdelman: Lin­king se­di­men­ta­ry sul­fur and iron bio­geo­che­mis­try to growth pat­terns of a cold-wa­ter co­ral mound in the Por­cu­p­i­ne Ba­sin, S.W. Ire­land (IODP Ex­pe­di­ti­on 307). Geo­bio­lo­gy, 13, 424-442. (2015)  PubMed
A Krupke, W Mohr, J LaRoche, BM Fuchs, RI Amann, MMM Kuypers: The ef­fect of nut­ri­ents on car­bon and ni­tro­gen fixa­ti­on by the UCYN-A–hap­to­phy­te sym­bio­sis. The ISME jour­nal 9 (7), 1635-1647 (2015)  PubMed  Full Text
A Perfumo, A Elsaesser, S Littmann, RA Foster, MMM Kuypers: Epifluo­re­scence, SEM, TEM and na­no­SIMS image ana­ly­sis of the cold phe­no­ty­pe of Clo­s­tri­di­um psy­chro­philum at sub­ze­ro tem­pe­ra­tu­res. FEMS mi­cro­bio­lo­gy eco­lo­gy 90 (3), 869-882 (2015)  PubMed  Full Text
MMM Kuypers: Mi­cro­bio­lo­gy: A di­vi­si­on of la­bour com­bi­ned. Na­tu­re 528 (7583), 487-488 (2015)  PubMed

Sym­bio­sis Group

Kleiner M, Wentrup C, Holler T, Lavik G, Harder J, Lott C, Littmann S, Kuypers MMM, Dubilier N.: Use of car­bon mon­oxi­de and hy­dro­gen by a bac­te­ria – ani­mal sym­bio­sis from se­agrass se­di­ments. En­vi­ron. Mi­cro­bi­ol. 17: 5023- 5035. doi:10.1111/​1462-2920.12912 (2015)  PubMed  Full Text
Sayavedra L, Kleiner M, Ponnudurai R, Wetzel S, Pelletier E, Barbe V, Shoguchi E, Satoh N, Reusch TBH, Rosenstiel P, Schilhabel MB, Becher D, Schweder T, Markert S, Dubilier N, Petersen JM.: Ab­un­dant to­xin-re­la­ted ge­nes in the ge­no­mes of be­ne­fi­ci­al sym­bi­onts from deep-sea hydro­ther­mal vent mus­sels. eLi­fe 2015;10.7554/​eLi­fe.07966. doi: http://​dx.doi.org/​10.7554/​eLi­fe.0796 (2015)  PubMed  Full Text
Dubilier N., McFall-Ngai M., Zhao L.: Crea­te a glo­bal mi­cro­bio­me ef­fort. Na­tu­re 526: 631-634 (2015)  PubMed
Schimak MP, Kleiner M, Wetzel S, Liebeke M, Dubilier N, Fuchs BM.: Mul­til­a­be­led fluo­re­scence in situ hy­bri­di­za­t­i­on (MiL-FISH) oli­go­nu­cleo­ti­des im­pro­ve vi­sua­liza­t­i­on of bac­te­ri­al cells. Appl. En­vi­ron. Mi­cro­bi­ol. On­line Ear­ly, Oc­to­ber 16, 2015. doi:10.1128/​AEM.02776-15. (2015)  PubMed  Full Text
Seah, B. K. B., & Gruber-Vodicka, H. R.: gb­tools: In­ter­ac­tive Vi­sua­liza­t­i­on of Me­ta­ge­no­me Bins in R. Fron­tiers in Mi­cro­bio­lo­gy, 6, 1451.http://​doi.org/​10.3389/​fmi­cb.2015.01451 (2015)  PubMed  Full Text
Liebeke, M.: Uni­que me­ta­bo­li­tes pro­tect ear­thworms against plant po­ly­phe­nols. Na­tu­re Com­mu­ni­ca­ti­ons 6, Ar­ti­cle num­ber:7869 doi:10.1038/​ncomms8869 (2015)  PubMed  Full Text
Gruhl, A. & Schwaha, T.: Bryo­zoa (Ec­topro­ca­ta). In: Schmidt-Rha­e­sa, A., Harzsch, S., Pursch­ke, G. (eds.) Struc­tu­re and Evo­lu­ti­on of In­ver­te­bra­te Ner­vous Sys­tems. Ox­ford Uni­ver­si­ty Press, pp. 325 – 340 (2015)  Oxford
Klose, J., Martin F. Polz, Michael Wagner, Mario P. Schimak, Sabine Gollnera, and Monika Bright: En­do­sym­bi­onts es­cape dead hydro­ther­mal vent tu­be­worms to en­rich the free-li­ving po­pu­la­ti­on. vol. 112 no. 36, 11300–11305, doi: 10.1073/​pnas.1501160112 (2015)  PubMed  Full Text
MSc Theses
Miriam Brandt: "Cha­rac­te­riza­t­i­on and com­pa­ra­ti­ve stu­dy of the che­mo­syn­the­thic sym­bio­sis in gut­less ma­ri­ne oli­gochae­tes from Be­li­ze and Ber­mu­da". Uni­ver­si­ty of Bre­men. (2015)
Miguel Angel Gonzalez Porras: "Pro­bing the com­ple­xi­ty of a deep-sea sym­bio­sis: Es­ta­blis­hing ge­ne­FISH as a tech­ni­que to image sym­bi­ont strain-spe­ci­fic dif­fe­ren­ces in me­ta­bo­lic po­ten­ti­al". In­ter­na­tio­nal MSc in Ma­ri­ne Bio­di­ver­si­ty and Con­ser­va­ti­on. MSc pro­gram of con­sor­ti­um of 6 Eu­ro­pean uni­ver­si­ties. (2015)
Benedikt Geier: "A cor­re­la­ti­ve ap­proach for com­bi­ning mul­ti­modal ima­ging tech­ni­ques in a 3D sce­na­rio". Ex­ter­nal stu­dent from the LMU Mu­nich. (2015)
Anna Kemper: "Sym­bi­ont me­ta­bo­lic po­ten­ti­al and host sym­bi­ont in­ter­ac­tions in the lu­ci­nid che­mo­syn­the­tic sym­bio­sis from Elba, Ita­ly. In­ter­na­tio­nal Max Planck Re­se­arch School for Ma­ri­ne Mi­cro­bio­lo­gy, Uni­ver­si­ty of Bre­men. (2015)
Rahel Yemanaberhan: "Car­bon in­cor­po­ra­ti­on and trans­fer in ma­ri­ne sym­bio­tic worms". In­ter­na­tio­nal Max Planck Re­se­arch School for Ma­ri­ne Mi­cro­bio­lo­gy, Uni­ver­si­ty of Bre­men. (2015)
PhD Theses
Judith Zimmermann: "Di­ver­si­ty, spe­ci­fi­ci­ty and evo­lu­tio­na­ry his­to­ry of ma­ri­ne in­ver­te­bra­te sym­bio­ses and func­tions of the sul­fur-oxi­di­zing sym­bi­onts". Fach­be­reich Bio­lo­gie/​Che­mie, Uni­ver­si­ty of Bre­men (2015)

Mar­Mic

Master Thesis
Melanie Buß: The im­port­an­ce and dif­fi­cul­ties of me­ta­da­ta ac­qui­si­ti­on and ca­te­go­riza­t­i­on for fun­gal 18S rRNA gene se­quen­ces. 123 pp. Uni­ver­si­ty of Bre­men. (2015)
Aldo Gonzalez–Ortiz: Iron Re­duc­tion and Me­tha­no­ge­ne­sis in Ma­ri­ne Sub­sur­face Se­di­ments from Hel­go­land. 164 pp. Uni­ver­si­ty of Bre­men. (2015)
Kerry Latham: Ni­tri­fi­ca­ti­on in san­dy co­as­tal se­di­ments. 48 pp. Uni­ver­si­ty of Bre­men. (2015)
Nataly Guevara C.: Ef­fects of oce­an aci­di­fi­ca­ti­on and El Niño event on mi­cro­bi­al com­mu­nities and ag­gre­ga­te for­ma­ti­on. 101 pp. Uni­ver­si­ty of Bre­men. (2015)
Jennifer Pastor: In­ves­ti­ga­ti­on of flux dy­na­mics across three iron re­gimes and the spa­tio-tem­po­ral trends of a tran­si­ent bloom in the Sou­thern Oce­an. 48 pp. Uni­ver­si­ty of Bre­men. (2015)
Anna Kemper: Sym­bi­ont me­ta­bo­lic po­ten­ti­al and host-sym­bi­ont in­ter­ac­tions in the lu­ci­nid che­mo­syn­the­tic sym­bio­sis from Elba, Ita­ly. 71 pp. Uni­ver­si­tät of Bre­men (2015)
Chao Peng: Oxy­gen con­sump­ti­on and De­ni­tri­fi­ca­ti­on ra­tes in sor­ted san­dy se­di­ments. 58 pp. Uni­ver­si­ty of Bre­men. (2015)
Rafael Laso Perez: Mole­cu­lar in­sights into a bu­ta­ne-de­gra­ding ther­mo­pi­lic con­sor­tia. 68 pp. Uni­ver­si­ty of Bre­men. (2015)
Birthe Zäncker: Per­sis­tence and dis­per­sal of mi­cro­bi­al po­pu­la­ti­ons in sub­sur­face ma­ri­ne se­di­ments. 67 pp. Uni­ver­si­ty of Bre­men. (2015)
Caitlin Petro: Ac­tivi­ty and as­sem­bly of sul­fa­te-re­du­cing mi­cro­or­ga­nisms in sub­sur­face ma­ri­ne se­di­ments. 72 pp. Aar­hus Uni­ver­si­ty. (2015)
Veronika Will: Iden­ti­fi­ca­ti­on of ge­nes and gene pro­ducts in­vol­ved in dia­tom-bac­te­ria in­ter­ac­tions. 66 pp. Ja­cobs Uni­ver­si­ty. (2015)
Rahel Yemanaberhan: Car­bon In­cor­po­ra­ti­on and Trans­fer in Ma­ri­ne Worms. 72 pp. Ja­cobs Uni­ver­si­ty. (2015)
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