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Publikationen 2019

Publikationen 2019

HGF MPG Joint Re­search Group for Deep-Sea Eco­logy and Tech­no­logy

Ansorge R., Romano S., Sayavedra L., González Porras M., Kupczok A., Tegetmeyer H.E., Petersen J., Dubilier N.: Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels. Nature Microbiology, 4: 2487–2497. doi:10.1038/s41564-019-0572-9. (2019)
Boetius A. : Global change microbiology - big questions about small life for our future. Nature Reviews Microbiology. 17:331-332. doi:10.1038/s41579-019-0197-2. (2019)
Braeckman U., Pasotti F., Vázquez S., Zacher K., Hoffmann R., Elvert M., Marchant H., Buckner C., Quartino M.L., MacCormack W., Soetaert K., Wenzhöfer F., Vanreusel A.: Degradation pathways of macroalgal detritus in shallow coastal Antarctic sediments. Limnology and Oceanography. 64:1423-1441. doi:10.1002/lno.11125. (2019)
Brown P., RELISH Consortium [Molari M.], Zhou Y.: Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Database, Volume 2019, 2019, baz085, https://doi.org/10.1093/database/baz085. (2019)
Cavicchioli R., Ripple W.J., Timmis K.N., Azam F., Bakken L.R., Baylis M., Behrenfeld M.J., Boetius A., et al.: Scientists’ warning to humanity: microorganisms and climate change. Nature Reviews Microbiology, 17:569-586. doi:10.1038/s41579-019-0222-5. (2019)
Hardisty A. R., Michener W.K., Agosti D., García E.A., Bastin L., Belbin L., Bowserg A., Buttigieg P. L., et al.: The Bari Manifesto: An interoperability framework for essential biodiversity variables. Ecological informatics 49, 22-31. (2019)
Hoffmann R., Al-Handal A.Y., Wulff A., Deregibus D., Zacher K., Quartino M.L., Wenzhöfer F., Braeckmann U.: Implications of glacial melt-related process on the potential primary production of a microphytobenthic community in Potter Cove (Antarctica). Frontiers in Marine Science, 6:655. doi:10.3389/fmars.2019.00655 (2019)
Koch H., Dürwald A., Schweder T., Noriega-Ortega B., Vidal-Melgosa S., Hehemann J.H., Dittmar T., Freese H.M., Becher D., Simon M., Wietz M.: Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides. The ISME Journal 13:92–103. doi: 10.1038/s41396-018-0252-4 (2019)
Krumpen T., Belter H.J., Boetius A., Damm E., Haas C., Hendricks S., Nicolaus M., Nöthig E.-M., Paul S., Peeken I., Ricker R., Stein R.: Arctic warming interrupts the Transpolar Drift and affects long-range transport of sea ice and ice-rafted matter. Scientific Reports. 9(1):5459. doi:10.1038/s41598-019-41456-y (2019)
Laso-Pérez R., Hahn C., van Vliet D.M., Tegetmeyer H., Schubotz F., Smit N.T., Pape T., Sahling H., Bohrmann G., Boetius A., Knittel K., Wegener G.: Anaerobic degradation of non-methane alkanes by "Candidatus Methanolaparia" in hydrocarbon seeps of the Gulf of Mexico. mBio 10(4):e01814-19. doi:10.1128/mBio.01814-19 (2019)
Mevenkamp L., Guilini K., Boetius A., Grave J.D., Laforce B., Vandenberghe D., Vincze L., Vanreusel A.: Responses of an abyssal meiobenthic community to short-term burial with crushed nodule particles in the south-east Pacific. Biogeosciences 16 (11), 2329-2341. doi:10.5194/bg-16-2329-2019. (2019)
Molari M., Guilini K., Lins L., Ramette A., Vanreusel A.: CO2 leakage can cause loss of benthic biodiversity in submarine sands. Marine environmental research 144, 213-229. https://doi.org/10.1016/j.marenvres.2019.01.006. (2019).
Morganti T., Ribes M., Yahel G., Coma R.: Size is the major determinant of pumping rate in marine sponges. Frontiers in Aquatic Physiology. doi:10.3389/fphys.2019.01474. (2019)
Pearlman J. S., Bushnell M., Coppola L., Buttigieg P.L., et al.: Evolving and sustaining ocean best practices and standards for the next decade. Frontiers in Marine Science 6, 277. (2019)
Purser A., Herr H., Dreutter S., Dorschel B., Glud R.N., Hehemann L., Hoge U., Jamieson A.J., Linley T.D., Stewart H.A., Wenzhöfer F.: Depression chains in seafloor of contrasting morphology, Atacama Trench margin. A comment on Marsh et al. (2018). R. Soc. open sci. 6:182053 doi:10.1098/rsos.182053 (2019)
Reintjes G., Tegetmeyer H.E., Bürgisser M., Orlic S., Tews I., Zubkov M., Voß D., Zielinski O., Quast C., Glöckner F.O., Amann R., Ferdelman T.G., Fuchs B.M.: On-site analysis of the bacterial communities of the Ultraoligotrophic South Pacific Gyre. Applied and Environmental Microbiology. 85(14):e00184-19. doi:10.1128/AEM.00184-19 (2019)
Ruff S. E., Felden J., Gruber-Vodicka H. R., Marcon Y., Knittel K., Ramette A., Boetius A.: In situ development of a methanotrophic microbiome in deep-sea sediments. The ISME Journal, 13:197-213. doi:10.1038/s41396-018-0263-1 (2019)
Rybakova E., Kremenetskaia A., Vedenin A., Boetius A., Gebruk A.: Deep-sea megabenthos communities of the Eurasian Central Arctic are influenced by ice-cover and sea-ice algal falls. PloS one 14 (7), e02110092019. (2019)
Varliero G., Bienhold C., Schmid F., Boetius A., Molari M.: Microbial diversity and connectivity in deep-sea sediments of the South Atlantic Polar Front. Frontiers in Microbiology. 10:665. doi:10.3389/fmicb.2019.00665 (2019)
Wang Y., Wegener G., Hou J., Wang F., Xiao X.: Expanding anaerobic alkane metabolism in the domain of Archaea. Nature Microbiology. 4:595-602. doi:10.1038/s41564-019-0364-2 (2019)
White, R.H., Allen, K.D. Wegener, G.: Identification of a Redox Active Thioquinoxalinol Sulfate Compound Produced by an Anaerobic Methane-Oxidizing Microbial Consortium, ACS Omega 2019, 4, 27, 22613-22622. doi.org/10.1021/acsomega.9b03450 (2019)
Yang T., Teske A., Ambrose W., Salman-Carvalho V., Bagnell R., Nielsen L.P.: Intracellular calcite and sulfur dynamics of Achromatium cells observed in a lab-based enrichment and aerobic incubation experiment. Antonie van Leeuwenhoek.112,2:263-274. doi:10.1007/s10482-018-1153-2. (2019)
Other publications Book chapters
Knittel K., Wegener G., Boetius A.: Anaerobic methane oxidizers. In: Microbial Communities Utilizing Hydrocarbons and Lipids: Members, Metagenomics and Ecophysiology, Handbook of Hydrocarbon and Lipid Microbiology. Editor: T. J. McGenity. Springer International Publishing, pp. 113-132. doi:10.1007/978-3-303-14785-3_7 (2019)
Editorials
Speich S., Lee T., Muller-Karger F. E., Lorenzoni L., Pascual A., Jin D., Delory E., Reverdin G., Siddorn J., Lewis M. R., Marba N., Buttigieg P. L., et al.: Oceanobs19: An Ocean of Opportunity. Frontiers in Marine Science 6, 570. (2019)

Microsensor Group

Al-Najjar MAA, Munday C, Fink A, Abdel-Moati MAR, Hamza W, Korte L, Stuut JB, Al-Ansari IS, Al-Maslamani I, de Beer D.: Nutritive effect of dust on microbial biodiversity and productivity of the Arabian Gulf. Aquatic Ecosystem Health & Management:1-13. (2019)
Basu S, Gledhill M, de Beer D, Prabhu Matondkar SG, Shaked Y.: Colonies of marine cyanobacteria Trichodesmium interact with associated bacteria to acquire iron from dust. Communications Biology 2:284. (2019)
Eichner M, Basu S, Gledhill M, de Beer D, Shaked Y.: Hydrogen Dynamics in Trichodesmium Colonies and Their Potential Role in Mineral Iron Acquisition. Front Microbiol 10:1565. (2019)
Eichner M, Basu S, Wang S, De Beer D, Shaked Y.: Mineral iron dissolution in Trichodesmium colonies: The role of O2 and pH microenvironments. Limnol Oceanogr:accepted. (2019)
Eichner M, Thoms S, Rost B, Mohr W, Ahmerkamp S, Ploug H, Kuypers MMM, de Beer D.: N2 fixation in free-floating filaments of Trichodesmium is higher than in transiently suboxic colony microenvironments. New Phytologist 222:852-863. (2019)
Klawonn I, Eichner MJ, Wilson ST, Moradi N, Thamdrup B, Kümmel S, Gehre M, Khalili A, Grossart HP, Karl DM, Ploug H.: Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies. ISME J. (2019)
Stemmer K, Brey T, Gutbrod MS, Beutler M, Schalkhausser B, Beer D.: In situ Measurements of pH, Ca2+, and DIC Dynamics within the Extrapallial Fluid of the Ocean Quahog Arctica islandica. Journal of Shellfish Research 38:71-78. (2019)

Greenhouse Gases Research Group

Khachikyan A., Milucka J., Littmann S., Ahmerkamp S., Meador T., Könneke M., Burg T., Kuypers M.M.M.: Direct cell mass measurements expand the role of small microorganisms in nature. Applied and Environmental Microbiology, doi:10.1128/AEM.00493-19. (2019)
Callbeck C.M., Pelzer C., Lavik G., Ferdelman T.G., Graf J. S., Vekeman B., Schunck H., Littmann S., Fuchs B.M., Hach P.F., Kalvelage T., Schmitz R.A., Kuypers M.M.M.: Arcobacter peruensis sp. nov., a chemolithoheterotroph isolated from sulfide-and organic-rich coastal waters off Peru. Applied and Environmental Microbiology. doi: 10.1128/AEM.01344-19 (2019)
Berg J. S., Pjevac P., Sommer T., Buckner C. R. T., Philippi M., Hach P. F., Liebeke M., Holtappels M., Danza F., Tonolla M., Sengupta A., Schubert C. J., Milucka J., Kuypers M.M.M.: Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters. Environmental Microbiology, doi: 10.1111/1462-2920.14543. (2019)
Schorn S., Salman-Carvalho V., Littmann S., Ionescu D., Grossart H-P., Cypionka H.: Cell architecture of the giant sulfur bacterium Achromatium oxaliferum: extra-cytoplasmic localization of calcium carbonate bodies. FEMS Microbiology Ecology. Doi: 10.1093/femsec/fiz200. (2019)

Department of Microbiology

Chen S.C., N. Musat, O.J. Lechtenfeld, H. Paschke, M. Schmidt, N. Said, D. Popp, F. Calabrese, H. Stryhanyuk, U. Jaekel, Y.G. Zhu, S.B. Joye, H.H. Richnow, F. Widdel, and F. Musat: Anaerobic oxidation of ethane by archaea from a marine hydrocarbon seep. Nature 568, 108-111. (2019)
Fischer T., M. Schorb, G. Reintjes, A. Kolovou, R. Santarella-Mellwig, S. Markert, E. Rhiel, S. Littmann, D. Becher, T. Schweder and J. Harder: Biopearling of interconnected outer membrane vesicle chains by a marine flavobacterium. Applied Environmental Microbiology 17, 85. (2019)
Kappelmann L., K. Krüger, J.-H. Hehemann, J. Harder, S. Markert, F. Unfried, D. Becher, N. Shapiro, T. Schweder, R.I. Amann and H. Teeling: Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. ISME Journal 13, 76-91. (2019)
Puentes-Cala E. and J. Harder: An RND transporter in the monoterpene metabolism of Castellaniella defragrans. Biodegradation 30, 1-12. (2019)
Rabus R, L. Wöhlbrand, D. Thies, M. Meyer, B. Reinhold-Hurek, and P. Kämpfer: Aromatoleum gen. nov., a novel genus accommodating the phylogenetic lineage including Azoarcus evansii and related species, and proposal of Aromatoleum aromaticum sp. nov., Aromatoleum petrolei sp. nov., Aromatoleum bremense sp. nov., Aromatoleum toluolicum sp. nov., and Aromatoleum diolicum sp. nov.. Int J Syst Evol Microbiol 69, 982-997. (2019)

Microbial Physiology Group

Hu Z., H. J. C. T. Wessels, T. van Alen, M. S. M. Jetten, B. Kartal: Nitric oxide dependent anaerobic ammonium oxidation. Nature Communications 10:1910 (2019)
Ferousi C., S. Lindhoud, F Baymann, E. R. Hester, J Reimann, B. Kartal: Discovery of a functional, contracted heme-binding motif within a multiheme cytochrome. Journal of Biological Chemistry 294:16953-16965 (2019)
Vekeman B.: Methyloparacoccus. Bergey's Manual of Systematics of Archaea and Bacteria 1-9: DOI: 10.1002/9781118960608 (2019)
Callbeck C. M., C. Pelzer, G. Lavik, T. G. Ferdelman, J. S. Graf, B. Vekeman, H. Schunck, S. Littmann, B. M. Fuchs, P. F. Hach, T. Kalvelage, R. A. Schmitz, M.M.M. Kuypers: Arcobacter peruensis sp. nov., a chemolithoheterotroph isolated from sulfide-and Organic-Rich Coastal Waters off Peru. Applied and Environmental Microbiology 85:e01344-19 (2019)
Akram M., J. Reimann, A. Dietl, A Menzel, W. Versantvoort, B. Kartal, M.S.M. Jetten, T. R. M. A. Barends: Nitric oxide-binding heterodimeric cytochrome c complex from the anammox bacterium Kuenenia stuttgartiensis binds to hydrazine synthase. Journal of Biological Chemistry 294:16712-16728 (2019)
Russ L., T. A. van Alen, M. S. M. Jetten, H. J. M. op den Camp, B. Kartal: Interactions of anaerobic ammonium oxidizers and sulfide-oxidizing bacteria in a substrate-limited model system mimicking the marine environment. FEMS Microbiology Ecology 95:9 (2019)
Versantvoort W., S. Guerrero-Castillo, H. J. C. T. Wessels, L. van Niftrik, M.S. M. Jetten, U. Brandt, J. Reimann, B. Kartal: Complexome analysis of the nitrite-dependent methanotroph Methylomirabilis lanthanidiphila. Biochimica et Biophysica Acta – Bioenergetics 1860:734-744 (2019)
Dietl A., W. J. Maalcke, C. Ferousi, M. S. M. Jetten, B. Kartal, T. R. M. Barends: A 60-heme reductase complex from an anammox bacterium shows an extended electron transfer pathway. Acta Crystallographica Section D 75:333-341 (2019)
Stultiens K., S. GuerreroCruz, M. A. H. J. van Kessel, M. S. M. Jetten, B. Kartal, H. J. M. op den Camp: Interactions between anaerobic ammonium-and methane-oxidizing microorganisms in a laboratory-scale sequencing batch reactor. Applied Microbiology and Biotechnology 103:6783–6795 (2019)

Molecular Ecology Group

Amann, R.: Das Frühjahrsmikrobiom der südlichen Nordsee: Bacterioplankton-Sukzessionen und bakterielle Polysaccharidverwertung in einem Küstenmeer. In: Die unbekannte Welt der Mikrobiome, pp. 31-41. Bayerische Akademie der Wissenschaften (Eds.) Verlag Dr. Pfeil, München, Germany. (2019)
Amann, R.I., S. Baichoo, B.J. Blencowe, P. Bork, M. Borodovsky, C. Brooksbank, P.S.G. Chain, R.R. Colwell, D.G. Daffonchio, A. Danchin, V. de Lorenzo, P.C. Dorrestein, R.D. Finn, C.M. Fraser, J.A. Gilbert, S.J. Hallam, P. Hugenholtz, J.P.A. Ioannidis, J.K. Jansson, J.F. Kim, H.-P. Klenk, M.G. Klotz, R. Knight, K.T. Konstantinidis, N.C. Kyrpides, C.E. Mason, A.C. McHardy, F. Meyer, C.A. Ouzounis, A.A.N. Patrinos, M. Podar, K.S. Pollard, J. Ravel, A.R. Muñoz, R.J. Roberts, R. Rosselló-Móra, S.-A. Sansone, P.D. Schloss, L.M. Schriml, J.C. Setubal, R. Sorek, R.L. Stevens, J.M. Tiedje, A. Turjanski, G.W. Tyson, D.W. Ussery, G.M. Weinstock, O. White, W.B. Whitman, and I. Xenarios: Towards unrestricted usage of public genomic data. Science 363: 6425-6427. (2019)
Francis, T.B., K. Krüger, B.M. Fuchs, H. Teeling, and R.I. Amann: Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae. System. Appl. Microbiol. 42: 41-53 (doi:10.1016/j.syapm.2018.08.007). (2019)
Hehemann, J.-H., G. Reintjes, L. Klassen, A.D. Smith, D. Ndeh, C. Arnosti, R. Amann, W. Abbott: Single cell fluorescence imaging of glycan uptake by intestinal bacteria. ISME J. 13: 1883-1889 (doi:10.1038/s41396-019-0406-z). (2019)
Kappelmann, L., K. Krüger, J.H. Hehemann, J. Harder, S. Markert, F. Unfried, D. Becher, N. Shapiro, T. Schweder, R.I. Amann, and H. Teeling: Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. ISME J. 13: 76-91 (doi:10.1038/s41396-018-0242-6). (2019)
Knittel, K., G. Wegener, A. Boetius: Anaerobic methane oxidizers. In: T. McGenity (ed.), Microbial communities utilizing hydrocarbons and lipids: members, metagenomics and ecophysiology, Handbook of Hydrocarbon and Lipid Micro-biology, Springer Nature Switzerland, chapter 7, pp. 113-132. (doi.org/10.1007/978-3-030-14785-3_7). (2019)
Krueger, K., M. Chafee, T.B. Francis, T.G. del Rio, D. Becher, T. Schweder, R.I. Amann, and H. Teeling: In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes. ISME J. 13: 2800-2816 (doi:10.1038/s41396-019-0476-y). (2019)
Laso-Pérez, R., C. Hahn, C., D.M. van Vliet, H.E. Tegetmeyer, F. Schubotz, N.T. Smit, T. Pape, H. Sahling, G. Bohrmann, A. Boetius, K. Knittel, and G. Wegener: Anaerobic degradation of non-methane alkanes by “Candidatus Methanoliparia” in hydrocarbon seeps of the Gulf of Mexico. mbio 10: e01814-19. (10.1128/mBio.01814-19). (2019)
Meier, D.V., P. Pjevac, W. Bach, S. Markert, T. Schweder, J. Jamieson, S. Petersen, R. Amann, and A. Meyerdierks: Microbial metal-sulfide oxidation in inactive hydrothermal vent chimneys suggested by metagenomic and metaproteomic analyses. Environ. Microbiol. 21: 682-701 (doi:10.1111/1462-2920.14514). (2019)
Orellana Retamal, L., T.B. Francis , K. Krueger , H. Teeling , M.-C. Mueller, B.M. Fuchs, K. Konstantinidis, and R. Amann: Niche differentiation among annually recurrent coastal marine group II Euryarchaeota. ISME J. 13: 3024-3036 (doi:10.1038/s41396-019-0491-z). (2019)
Pjevac, P., S. Dyksma, T. Goldhammer, I. Mujakic, M. Koblizek, M. Mußmann, R. Amann, and S. Orlic: In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica. Environ. Microbiol. 21: 3896-3908 (doi:10.1111/1462-2920.14739). (2019)
Ramírez, A.S., O.M. Vega-Orellana, T. Viver, J.B. Poveda, R.S. Rosales, C.G. Poveda, J. Spergser, M.P. Szostak, M.J. Caballero, L. Ressel, J.M. Bradbury, M.M. Tavío, K.T. Konstantinidis, R. Amann, S. Karthikeyan, and R. Rossello-Mora: First description of two moderately halophilic and psychrotolerant Mycoplasma species isolated from cephalopods and proposal of Mycoplasma marinum sp. nov. and Mycoplasma todarodis sp. nov. System. Appl. Microbiol. 42: 457-467. (2019)
Reintjes, G., C. Arnosti, B.M. Fuchs and R. Amann: Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeograpical study of microbial substrate utilisation. ISME J. 13: 1119-1132 (doi:10.1038/s41396-019-0406-z). (2019)
Reintjes, G., H.E. Tegetmeyer, M. Bürgisser, S. Orlić, I. Tews, M.V. Zubkov, D. Voß, O. Zielinski, C. Quast, F.O. Gloeckner, R. Amann, T. Ferdelman, and B. Fuchs: On-site analysis of bacterial communities of the ultra-oligotrophic South Pacific Gyre. Appl. Environ. Microbiol. 85:e00184-19 (doi:10.1128/AEM.00184-19). (2019)
Ruff, S.E., J. Felden, H.R. Gruber-Vodicka, Y. Marcon, K. Knittel, A. Ramette, and A. Boetius: In situ development of a methanotrophic microbiome in deep-sea sediments. ISME J. 13: 197-213 (doi:10.1038/s41396-018-0263-1). (2019)
Schada von Borzyskowski, L., F. Severi, K. Krüger, L. Hermann, A. Gilardet, F. Sippel, B. Pommerenke, P. Claus, N. Socorro Cortina, T. Glatter, S. Zauner, J. Zarzycki, B.M. Fuchs, E. Bremer, U.G. Maier, R.I. Amann and T.J. Erb: Marine Proteobacteria metabolize glycolate via the β-hydroxyaspartate cycle. Nature 575: 500-504 (doi:10.1038/s41586-019-1748-4). (2019)
Viver, T., L.H. Orellana, S. Diaz, M. Urdiain, M.D. Ramos-Barbero, J.E. Gonzales-Pastor, A. Oren, J.K. Hatt, R. Amann, J. Anton, K.T. Konstantinidis, and R. Rossello-Mora: Predominance of deterministic microbial community dynamics in salterns exposed to different light intensities. Environ. Microbiol. 21: 4300-4315 (doi:10.1111/1462-2920.14790). (2019)

Department of Biogeochemistry

Berg, J. S., Pjevac, P., Sommer, T., Buckner, C. R. T., Philippi, M., Hach, P. F., Liebeke, M., Holtappels, M., Danza, F., Tonolla, M., Sengupta, A., Schubert, C. J., Milucka, J. and Kuypers, M. M. M.: Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters. Environmental Microbiology 21(5): 1611-1626. (2019)
Braeckman, U., Pasotti, F., Vázquez, S., Zacher, K., Hoffmann, R., Elvert, M., Marchant, H.K., Buckner, C.R.T., Quartino, M. L., Mác Cormack, W., Soetaert, K., Wenzhöfer, F. and Vanreusel, A.: Degradation of macroalgal detritus in shallow coastal Antarctic sediments. Limnology and Oceanography 64(4): 1423-1441. (2019)
Callbeck, C. M., Pelzer, C., Lavik, G., Ferdelman, T. G., Graf, J. S., Vekeman, B., Schunck, H., Littmann, S., Fuchs, B. M., Hach, P. F., Kalvelage, T., Schmitz, R. A. and Kuypers, M. M. M.: Arcobacter peruensis sp. nov., a Chemolithoheterotroph Isolated from Sulfide- and Organic-Rich Coastal Waters off Peru. Applied and Environmental Microbiology 85(24): e01344-01319. DOI:10.1128/AEM.01344-19 (2019)
Eichner, M., Thoms, S., Rost, B., Mohr, W., Ahmerkamp, S., Ploug, H., Kuypers, M. M. M. and de Beer, D.: N2 fixation in free-floating filaments of Trichodesmium is higher than in transiently suboxic colony microenvironments. New Phytologist 222(2): 852-863. (2019)
Fischer, T., Schorb, M., Reintjes, G., Kolovou, A., Santarella-Mellwig, R., Markert, S., Rhiel, E., Littmann, S., Becher, D., Schweder, T. and Harder, J.: Biopearling of Interconnected Outer Membrane Vesicle Chains by a Marine Flavobacterium. Applied and Environmental Microbiology 85(19): e00829-00819. DOI:10.1128/AEM.00829-19 (2019)
Jäckle, O., Seah, B. K. B., Tietjen, M., Leisch, N., Liebeke, M., Kleiner, M., Berg, J. S. and Gruber-Vodicka, H. R.: Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. Proceedings of the National Academy of Sciences 116(17): 8505-8514. (2019)
Khachikyan, A., Milucka, J., Littmann, S., Ahmerkamp, S., Meador, T., Könneke, M., Burg, T. and Kuypers, M. M. M.: Direct Cell Mass Measurements Expand the Role of Small Microorganisms in Nature. Applied and Environmental Microbiology 85(14): e00493-00419. DOI:10.1128/AEM.00493-19 (2019)
Kitzinger, K., Padilla, C. C., Marchant, H. K., Hach, P. F., Herbold, C. W., Kidane, A. T., Könneke, M., Littmann, S., Mooshammer, M., Niggemann, J., Petrov, S., Richter, A., Stewart, F. J., Wagner, M., Kuypers, M. M. M. and Bristow, L. A.: Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment. Nature Microbiology 4(2): 234-243. DOI:10.1038/s41564-018-0316-2 (2019)
Klawonn, I., Bonaglia, S., Whitehouse, M. J., Littmann, S., Tienken, D., Kuypers, M. M. M., Brüchert, V. and Ploug, H.: Untangling hidden nutrient dynamics: rapid ammonium cycling and single-cell ammonium assimilation in marine plankton communities. The ISME Journal 13(8): 1960-1974. (2019)
Klawonn, I., Eichner, M. J., Wilson, S. T., Moradi, N., Thamdrup, B., Kümmel, S., Gehre, M., Khalili, A., Grossart, H.-P., Karl, D. M. and Ploug, H.: Distinct nitrogen cycling and steep chemical gradients in Trichodesmium colonies. The ISME Journal DOI:10.1038/s41396-019-0514-9. (2019)
Konze, S. A., Abraham, W.-R., Goethe, E., Surges, E., Kuypers, M. M. M., Hoeltig, D., Meens, J., Vogel, C., Stiesch, M., Valentin-Weigand, P., Gerlach, G.-F. and Buettner, F. F. R.: Link between Heterotrophic Carbon Fixation and Virulence in the Porcine Lung Pathogen Actinobacillus pleuropneumoniae. Infection and Immunity 87(9): e00768-00718. DOI:10.1128/IAI.00768-18 (2019)
Lahme, S., Enning, D., Callbeck, C. M., Menendez Vega, D., Curtis, T. P., Head, I. M. and Hubert, C. R. J.: Metabolites of an Oil Field Sulfide-Oxidizing, Nitrate-Reducing Sulfurimonas sp. Cause Severe Corrosion. Applied and Environmental Microbiology 85(3): e01891-01818. DOI:10.1128/AEM.01891-18 (2019)
Meister, P., Brunner, B., Picard, A., Böttcher, M. E. and Jørgensen, B. B.: Sulphur and carbon isotopes as tracers of past sub-seafloor microbial activity. Scientific Reports 9(1): 604. DOI:10.1038/s41598-018-36943-7 (2019)
Meister, P., Liu, B., Khalili, A., Böttcher, M. E. and Jørgensen, B. B.: Factors controlling the carbon isotope composition of dissolved inorganic carbon and methane in marine porewater: An evaluation by reaction-transport modelling. Journal of Marine Systems 200: 103227. DOI:10.1016/j.jmarsys.2019.103227 (2019)
Olofsson, M., Kourtchenko, O., Zetsche, E.-M., Marchant, H. K., Whitehouse, M. J., Godhe, A. and Ploug, H.: High single-cell diversity in carbon and nitrogen assimilations by a chain-forming diatom across a century. Environmental Microbiology 21(1): 142-151. (2019)
Orsi, W. D., Vuillemin, A., Rodriguez, P., Coskun, Ö. K., Gomez-Saez, G. V., Lavik, G., Morholz, V. and Ferdelman, T. G.: Metabolic activity analyses demonstrate that Lokiarchaeon exhibits homoacetogenesis in sulfidic marine sediments. Nature Microbiology DOI: 10.1038/s41564-019-0630-3. (2019)
Petro, C., Zäncker, B., Starnawski, P., Jochum, L. M., Ferdelman, T. G., Jørgensen, B. B., Røy, H., Kjeldsen, K. U. and Schramm, A.: Marine Deep Biosphere Microbial Communities Assemble in Near-Surface Sediments in Aarhus Bay. Frontiers in Microbiology 10(758). DOI:10.3389/fmicb.2019.00758 (2019)
Reintjes, G., Tegetmeyer, H. E., Bürgisser, M., Orlić, S., Tews, I., Zubkov, M., Voß, D., Zielinski, O., Quast, C., Glöckner, F. O., Amann, R., Ferdelman, T. G. and Fuchs, B. M.: On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre. Applied and Environmental Microbiology 85(14): e00184-00119. DOI:10.1128/AEM.00184-19 (2019)
Rubin-Blum, M., Antony, C. P., Sayavedra, L., Martínez-Pérez, C., Birgel, D., Peckmann, J., Wu, Y.-C., Cardenas, P., MacDonald, I., Marcon, Y., Sahling, H., Hentschel, U. and Dubilier, N.: Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts. The ISME Journal 13(5): 1209-1225. (2019)
Schoffelen, N. J., Mohr, W., Ferdelman, T. G., Duerschlag, J., Littmann, S., Ploug, H. and Kuypers, M. M. M.: Phosphate availability affects fixed nitrogen transfer from diazotrophs to their epibionts. The ISME Journal 13(11): 2701-2713. (2019)
Schorn, S., Salman-Carvalho, V., Littmann, S., Ionescu, D., Grossart, H.-P. and Cypionka, H.: Cell architecture of the giant sulfur bacterium Achromatium oxaliferum: Extra-cytoplasmic localization of calcium carbonate bodies. FEMS Microbiology Ecology. DOI: 10.1093/femsec/fiz200. (2019)
Schutte, C. A., Ahmerkamp, S., Wu, C. S., Seidel, M., de Beer, D., Cook, P. L. M. and Joye, S. B.: Biogeochemical Dynamics of Coastal Tidal Flats. Coastal Wetlands, Eds: G. M. E. Perillo, E. Wolanski, D. R. Cahoon and C. S. Hopkinson, Elsevier . DOI:10.1016/B978-0-444-63893-9.00012-5: 407-440. (2019)
Velasco-Acebes, J., Tornos, F., Kidane, A. T., Wiedenbeck, M., Velasco, F. and Delgado, A.: Isotope geochemistry tracks the maturation of submarine massive sulfide mounds (Iberian Pyrite Belt). Mineralium Deposita 54(6): 913-934. (2019)
Waska, H., Greskowiak, J., Ahrens, J., Beck, M., Ahmerkamp, S., Böning, P., Brumsack, H. J., Degenhardt, J., Ehlert, C., Engelen, B., Grünenbaum, N., Holtappels, M., Pahnke, K., Marchant, H. K., Massmann, G., Meier, D., Schnetger, B., Schwalfenberg, K., Simon, H., Vandieken, V., Zielinski, O. and Dittmar, T.: Spatial and Temporal Patterns of Pore Water Chemistry in the Inter-Tidal Zone of a High Energy Beach. Frontiers in Marine Science 6(154). DOI:10.3389/fmars.2019.00154 (2019)

Flow Cytrometry Research Group

Reintjes G., Tegetmeyer H.E., Bürgisser M., Orlić S., Tews I., Zubkov M., Voß D., Zielinski O., Quast C., Glöckner F.O., Amann R., Ferdelman T.G., Fuchs B.M.: On-Site Analysis of bacterial communities of the ultraoligotrophic South Pacific Gyre. Appl Environ Microbiol 85:e00184-19. (2019)
Reintjes G., Arnosti C., Fuchs B., Amann R.: Selfish, sharing and scavenging bacteria in the Atlantic Ocean: a biogeographical study of bacterial substrate utilisation. ISME J 13:1119. (2019)
Francis T.B., Krüger K., Fuchs B.M., Teeling H., Amann R.I.: Candidatus Prosiliicoccus vernus, a spring phytoplankton bloom associated member of the Flavobacteriaceae. Syst Appl Microbiol 42:41–53. (2019)

Microbial Genomics Group

Pereira-Flores, E., F. O. Glöckner, and A. Fernandez-Guerra: Fast and accurate average genome size and 16S rRNA gene average copy number computation in metagenomic data. BMC Bioinformatics 20:453. (2019)
Rambold, G., J. Harjes, S. Klaster, V. Sanz, P. Yilmaz, F. O. Glöckner, A. Link, and D. Triebel: Meta-omics data and collection objects (MOD-CO): a conceptual schema and data model for processing sample data in meta-omics research. Database 2019. (2019)
Reintjes, G., H. E. Tegetmeyer, M. Bürgisser, S. Orlić, I. Tews, M. Zubkov, D. Voß, O. Zielinski, C. Quast, F. O. Glöckner, et al.: On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre. Appl. Environ. Microbiol. 85:e00184-19. (2019)
Garin-Fernandez, A., and A. Wichels: Looking for the hidden: Characterization of lysogenic phages in potential pathogenic Vibrio species from the North Sea. Marine Genomics:100725. (2019)
McGhee, J. J., N. Rawson, B. A. Bailey, A. Fernandez-Guerra, and S. T. Kelley: Meta-SourceTracker: Application of Bayesian source tracking to shotgun metagenomics. PeerJ Preprints 7:e27869v1. (2019)

ICBM-MPI Bridging Group for Marine Geochemistry 

Bao H., Niggemann J., Huang D., Dittmar T., Kao S.J.: Different responses of dissolved black carbon and dissolved lignin to seasonal hydrological changes and an extreme rain event. JGR Biogeosciences 124: 479-493. (2019)
Bayer B., Hansman R.L., Bittner M.J., Noriega-Ortega B.E., Niggemann J., Dittmar T., Herndl G.J.: Ammonia-oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean. Environmental Microbiology 21: 4062-4075. (2019)
Igarza M., Dittmar T., Graco M., Niggemann J.: Dissolved organic matter cycling in the coastal upwelling system off central Peru during an "El Niño" year. Frontiers in Marine Science 6: 198. (2019)
Jones M.W., de Aragão L.E.O.C., Dittmar T., Rezende C.E., Almeida M.G., Johnson B.T., Marques J.S.J., Niggemann J., Rangel T.P., Quine T.A.: Environmental controls on the riverine export of dissolved black carbon. Global Biogeochemical Cycles 33: 849-874. (2019)
Kitzinger K., Padilla C.C., Marchant H.K., Hach P.F., Herbold C.W., Kidane A.T., Könneke M., Littmann S., Mooshammer M., Niggemann J., Petrov S., Richter A., Stewart F.J., Wagner M., Kuypers M.M.M., Bristow L.A.: Cyanate and urea are substrates for nitrification by Thaumarchaeota in the marine environment. Nature Microbiology 4: 234-243. (2019)
Koch H., Dürwald A., Schweder T., Noriega-Ortega B., Vidal-Melgosa S., Hehemann J.H., Dittmar T., Freese H.M., Becher D., Simon M., Wietz M.: Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides. ISME Journal 13: 92-103. (2019)
Mari X., Guinot B., Chu T.V., Brune J., Lefebvre J.-P., Pradeep Ram A.S., Raimbault P., Dittmar T., Niggemann J.: Biogeochemical impacts of a black carbon wet deposition event in Halong Bay, Vietnam. Frontiers in Marine Science 6: 185. (2019)
Roth V.N., Lange M., Simon C., Hertkorn N., Bucher S., Goodall T., Griffiths R.I., Mellado-Vázquez P.G., Mommer L., Oram N.J., Weigelt A., Dittmar T., Gleixner G.: Persistence of dissolved organic matter explained by molecular changes during its passage through soil. Nature Geoscience 12(9): 755-761. (2019)
Schutte C.A., Ahmerkamp S., Wu C.S., Seidel M., De Beer D., Cook P.L.M., Joye S.B.: Chapter 12 - Biogeochemical dynamics of coastal tidal flats. In: G. M. E. Perillo, E. Wolanski, D. R. Cahoon and C. S. Hopkinson (eds.), Coastal Wetlands. Elsevier: 407-440. (2019)
Seibert S.L., Böttcher M.E., Schubert F., Pollmann T., Giani L., Tsukamoto S., Frechen M., Freund H., Waska H., Simon H., Holt T., Greskowiak J., Massmann G.: Iron sulfide formation in young and rapidly-deposited permeable sands at the land-sea transition zone. Science of the Total Environment 649: 264-283. (2019)
Simon C., Osterholz H., Koschinsky A., Dittmar T.: Riverine mixing at the molecular scale – An ultrahigh-resolution mass spectrometry study on dissolved organic matter and selected metals in the Amazon confluence zone (Manaus, Brazil). Organic Geochemistry 129: 45-62. (2019)
Wagner S., Fair J.H., Matt S., Hosen J.D., Raymond P., Saiers J., James B.S., Dittmar T., Stubbins A.: Molecular hysteresis: hydrologically driven changes in riverine dissolved organic matter chemistry during a storm event. Journal of Geophysical Research: Biogeosciences 124(4): 759-774. (2019)
Waska H., Brumsack H.J., Massmann G., Koschinsky A., Schnetger B., Simon H., Dittmar T.: Inorganic and organic copper and iron species of the subterranean estuary: Origins and fate. Geochimica et Cosmochimica Acta 259: 211-232. (2019)
Waska H., Greskowiak J., Ahrens J., Beck M., Ahmerkamp S., Böning P., Brumsack H.J., Degenhardt J., Ehlert C., Engelen B., Grünenbaum N., Holtappels M., Pahnke K., Marchant H.K., Massmann G., Meier D., Schnetger B., Schwalfenberg K., Simon H., Vandieken V., Zielinski O., Dittmar T.: Spatial and temporal patterns of pore water chemistry in the inter-tidal zone of a high energy beach. Frontiers in Marine Science 6: 154. (2019)

MARUM MPG Bridge Group Marine Glycobiology

Reisky, L., Préchoux, A., Zühlke, M.-K., Bäumgen, M., Robb, C. S., Gerlach, N., Tao. S., Schweder, T., Bornsscheuer, U., Hehemann, J.-H.: A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan. Nature Chemical Biology. 15 (8), 803-812 (2019)
Hehemann, J.-H., Reintjes, G., Amann, R., Abbott, D. W., Klassen, L., Smith, A. D., Abbott, D. W.: Single cell fluorescence imaging of glycan uptake by intestinal bacteria. The ISME Journal. 13 (7), 1883-1889 (2019)
Wawra, S., Fesel, P., Widmer, H., Neumann, U., Lahrmann, U., Becker, S., Hehemann, J.-H., Langen, G., Zuccaro, A.: FGB1 and WSC3 are in planta- induced β -glucan-binding fungal lectins with different functions. New Phytologist. 222 (3), 1493-1506 (2019)
Scheschonk, L., Becker, S., Hehemann, J., Diehl, N., Karsten, U., & Bischof, K.: Arctic kelp eco-physiology during the polar night in the face of global warming: a crucial role for laminarin. Marine Ecology Progress Series. 611, 59-74 (2019)
Koch,H., Duerwald, A.,Schweder, T., Noriega-Ortega, B., Vidal-Melgosa, S., Hehemann J.H., Wietz M.: Biphasic cellular adaptations and ecological implications of Alteromonas macleodii degrading a mixture of algal polysaccharides. The ISME journal 13 (1), 92-103 (2019)
Kappelmann, L., Krüger, K., Hehemann, J.-H., Harder,J., Markert, S., Unfried, F.: Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans. The ISME journal 13 (1), 76-91 (2019)

Research Group Metabolic Interactions

Berg J.S., Pjevac P., Sommer T., Buckner C.R.T., Philippi M., Hach P.F., Liebeke M., Holtappels M., Danza F., Tonolla M., Sengupta A., Schubert C.J., Milucka J., Kuypers M.M.M.: Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters. Environmental Microbiology 21, 1611-1626. doi:10.1111/1462-2920.14543 (2019)
Geier, B., Franke, M., Ruthensteiner, B., González Porras., M.A., Gruhl, A., Wörmer, L., Moosmann, J., Hammel, J.U., Dubilier, N., Leisch, N., Liebeke, M.: Correlative 3D anatomy and spatial chemistry in animal-microbe symbioses – Developing sample preparation for phase-contrast synchrotron radiation based micro-computed tomography and mass spectrometry imaging. Proceedings of SPIE, Developments in X-Ray Tomography XII 11113, 1111306 (doi:10.1117/12. 253065) (2019)
Gruber-Vodicka H.R., Leisch N., Kleiner M., Hinzke T., Liebeke M., McFall-Ngai M., Hadfield M.G., Dubilier N.: Two intracel¬lular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. Nature Microbiology 4, 1465–1474. doi:10.1038/s41564-019-0475-9 (2019)
Jäckle O., Seah B.K.B., Tietjen M., Leisch N., Liebeke M., Kleiner M., Berg J.S., Gruber-Vodicka H.R.: Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. PNAS 116(17), 8505-8514. 201818995. doi:10.1073/pnas.1818995116 (2019)
Liebeke M., Puskás E.: Dry¬ing en¬han¬ces si¬gnal in¬ten¬si¬ties for glo¬bal GC–MS metabo¬lo¬mics. Metabolites 9, 68. doi:10.3390/metabo9040068 (2019)
Rubin-Blum M., Antony C.P., Sayavedra L., Martínez-Pérez C., Birgel D., Peckmann J., Wu Y.-C., Cardenas P., Mac¬Donald I., Marcon Y., Sahling H., Hentschel U., Dubilier N.: Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts. The ISME Journal 13, 1209–1225. doi:10.1038/s41396-019-0346-7 (2019)
Seah B.K.B., Antony C.P., Huettel B., Zarzycki J., Borzyskowski L.S. von, Erb T.J., Kouris A., Kleiner M., Liebeke M., Dubilier N., Gruber-Vodicka H.R.: Sul¬fur-oxi¬di-zing symbionts without canonical genes for autotrophic CO2 fixation. mBio 10, e01112-19. doi:10.1128/mBio.01112-19 (2019)
Sogin E.M., Puskás E., Dubilier N., Liebeke M.: Marine metabolomics: a method for nontargeted measurement of metabolites in seawater by gas chromatography–mass spectrometry. mSystems 4, e00638-19. doi:10.1128/mSystems.00638-19 (2019)

Department of Symbiosis

Ansorge R., Romano S., Sayavedra L., Porras M.Á.G., Kupczok A., Tegetmeyer H.E., Dubilier N., Petersen J.: Functional diversity enables multiple symbiont strains to coexist in deep-sea mussels. Nature Microbiology 4, 2487–2497. doi:10.1038/s41564-019-0572-9 (2019)
Berg J.S., Pjevac P., Sommer T., Buckner C.R.T., Philippi M., Hach P.F., Liebeke M., Holtappels M., Danza F., Tonolla M., Sengupta A., Schubert C.J., Milucka J., Kuypers M.M.M.: Dark aerobic sulfide oxidation by anoxygenic phototrophs in anoxic waters. Environmental Microbiology 21, 1611-1626. doi:10.1111/1462-2920.14543 (2019)
Geier B., Franke M., Ruthensteiner B., González Porras M.A., Gruhl A. Wörmer L., Moosmann J., Hammel J.U., Dubilier N., Leisch N., Liebeke M.: Correlative 3D anatomy and spatial chemistry in animal-microbe symbioses – Developing sample preparation for phase-contrast synchrotron radiation based micro-computed tomography and mass spectrometry imaging. Proceedings of SPIE, Developments in X-Ray Tomography XII 11113, 1111306, doi:10.1117/12.253065 (2019)
Gruber-Vodicka H.R., Leisch N., Kleiner M., Hinzke T., Liebeke M., McFall-Ngai M., Hadfield M.G., Dubilier N.: Two intracel¬lular and cell type-specific bacterial symbionts in the placozoan Trichoplax H2. Nature Microbiology 4, 1465–1474. doi:10.1038/s41564-019-0475-9 (2019)
Jäckle O., Seah B.K.B., Tietjen M., Leisch N., Liebeke M., Kleiner M., Berg J.S., Gruber-Vodicka H.R.: Chemosynthetic symbiont with a drastically reduced genome serves as primary energy storage in the marine flatworm Paracatenula. PNAS 116, 8505-8514. 201818995. doi:10.1073/pnas.1818995116 (2019)
Liebeke M., Puskás E.: Dry¬ing en¬han¬ces si¬gnal in¬ten¬si¬ties for glo¬bal GC–MS metabo¬lo¬mics. Metabolites 9, 68. doi:10.3390/metabo9040068 (2019)
Picazo D.R., Dagan T., Ansorge R., Petersen J.M., Dubilier N., Kupczok A.: Horizontally transmitted symbiont populations in deep-sea mussels are genetically isolated. The ISME Journal 13, 2954–2968. doi:10.1038/s41396-019-0475-z (2019)
Rubin-Blum M., Antony C.P., Sayavedra L., Martínez-Pérez C., Birgel D., Peckmann J., Wu Y.-C., Cardenas P., Mac¬Donald I., Marcon Y., Sahling H., Hentschel U., Dubilier N.: Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts. The ISME Journal 13, 1209–1225. doi:10.1038/s41396-019-0346-7 (2019)
Rubin-Blum M., Dubilier N., Kleiner M.: Genetic evidence for two carbon fixation pathways (the Calvin-Benson-Bassham cycle and the Reverse Tricarboxylic Acid cycle) in symbiotic and free-living bacteria. mSphere 4, e00394-18. doi:10.1128/mSphere.00394-18 (2019)
Schnier J., Ahlrichs W.H., Gruhl A., Schulbert C., Teichert S., Kieneke A.: Ultrastructure of the epidermal gland system of Tetranchyroderma suecicum Boaden, 1960 (Gastrotricha: Macrodasyida) indicates a defensive function of its exudate. Zoomorphology 138, 443–462. doi.org/10.1007/s00435-019-00462-4. (2019)
Seah B.K.B., Antony C.P., Huettel B., Zarzycki J., Borzyskowski L.S., von Erb T.J., Kouris A., Kleiner M., Liebeke M., Dubilier N., Gruber-Vodicka H.R.: Sul¬fur-oxi¬di-zing symbionts without canonical genes for autotrophic CO2 fixation. mBio 10, e01112-19. doi:10.1128/mBio.01112-19 (2019)
Sogin E.M., Puskás E., Dubilier N., Liebeke M.: Marine metabolomics: a method for nontargeted measurement of metabolites in seawater by gas chromatography–mass spectrometry. mSystems 4, e00638-19. doi:10.1128/mSystems.00638-19 (2019)
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